data_7WRD # _model_server_result.job_id YrBzpyilE40aHaVda8GLAQ _model_server_result.datetime_utc '2024-12-24 17:09:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1201}' # _entry.id 7WRD # _exptl.entry_id 7WRD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WRD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 929 A CYS 929 1_555 A SG CYS 940 A CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf2 B SG CYS 929 B CYS 929 1_555 B SG CYS 940 B CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 C SG CYS 929 C CYS 929 1_555 C SG CYS 940 C CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 D SG CYS 929 D CYS 929 1_555 D SG CYS 940 D CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 A OE1 GLU 782 A GLU 782 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc2 A OE2 GLU 782 A GLU 782 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc3 A OD1 ASN 799 A ASN 799 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc4 A OD2 ASP 802 A ASP 802 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc5 B OE1 GLU 782 B GLU 782 1_555 G CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc6 B OE2 GLU 782 B GLU 782 1_555 G CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc7 B OD1 ASN 799 B ASN 799 1_555 G CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc8 B OD2 ASP 802 B ASP 802 1_555 G CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc9 C OE1 GLU 782 C GLU 782 1_555 I CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc10 C OE2 GLU 782 C GLU 782 1_555 I CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc11 C OD1 ASN 799 C ASN 799 1_555 I CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc12 C OD2 ASP 802 C ASP 802 1_555 I CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc13 D OE1 GLU 782 D GLU 782 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc14 D OE2 GLU 782 D GLU 782 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc15 D OD1 ASN 799 D ASN 799 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc16 D OD2 ASP 802 D ASP 802 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WRD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 1201 1201 CA CA . F 3 KX7 A 1 1202 1301 KX7 LIG . G 2 CA B 1 1201 1201 CA CA . H 3 KX7 B 1 1202 1301 KX7 LIG . I 2 CA C 1 1201 1201 CA CA . J 3 KX7 C 1 1202 1301 KX7 LIG . K 2 CA D 1 1201 1201 CA CA . L 3 KX7 D 1 1202 1301 KX7 LIG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x 122.52 _atom_site.Cartn_y 162.722 _atom_site.Cartn_z 158.882 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1201 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #