data_7WRD
#
_model_server_result.job_id            ofhD2MC2rbL1aXqbuhypYQ 
_model_server_result.datetime_utc      '2024-12-24 16:56:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7wrd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1202}' 
#
_entry.id    7WRD 
#
_exptl.entry_id    7WRD 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              311.292 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Icilin 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7WRD 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7WRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 929 A CYS 929 1_555 A SG CYS 940 A CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf2 B SG CYS 929 B CYS 929 1_555 B SG CYS 940 B CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf3 C SG CYS 929 C CYS 929 1_555 C SG CYS 940 C CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf4 D SG CYS 929 D CYS 929 1_555 D SG CYS 940 D CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc1 A OE1 GLU 782 A GLU 782 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc2 A OE2 GLU 782 A GLU 782 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc3 A OD1 ASN 799 A ASN 799 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc4 A OD2 ASP 802 A ASP 802 1_555 E CA CA . A CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc5 B OE1 GLU 782 B GLU 782 1_555 G CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc6 B OE2 GLU 782 B GLU 782 1_555 G CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc7 B OD1 ASN 799 B ASN 799 1_555 G CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc8 B OD2 ASP 802 B ASP 802 1_555 G CA CA . B CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc9 C OE1 GLU 782 C GLU 782 1_555 I CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc10 C OE2 GLU 782 C GLU 782 1_555 I CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc11 C OD1 ASN 799 C ASN 799 1_555 I CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc12 C OD2 ASP 802 C ASP 802 1_555 I CA CA . C CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc13 D OE1 GLU 782 D GLU 782 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc14 D OE2 GLU 782 D GLU 782 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc15 D OD1 ASN 799 D ASN 799 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc16 D OD2 ASP 802 D ASP 802 1_555 K CA CA . D CA 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
#
_chem_comp.formula           'C16 H13 N3 O4' 
_chem_comp.formula_weight    311.292 
_chem_comp.id                KX7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Icilin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-(2-hydroxyphenyl)-6-(3-nitrophenyl)-3,4-dihydropyrimidin-2(1H)-one 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O23 N21 KX7 doub 171 n n 
C18 C19 KX7 doub 172 n y 
C18 C17 KX7 sing 173 n y 
C19 C20 KX7 sing 174 n y 
N21 C17 KX7 sing 175 n n 
N21 O22 KX7 sing 176 n n 
C17 C16 KX7 doub 177 n y 
C20 C15 KX7 doub 178 n y 
C16 C15 KX7 sing 179 n y 
C15 C03 KX7 sing 180 n n 
N04 C03 KX7 sing 181 n n 
N04 C05 KX7 sing 182 n n 
O06 C05 KX7 doub 183 n n 
C03 C02 KX7 doub 184 n n 
C05 N07 KX7 sing 185 n n 
C02 C01 KX7 sing 186 n n 
N07 C01 KX7 sing 187 n n 
N07 C08 KX7 sing 188 n n 
C08 C09 KX7 doub 189 n y 
C08 C13 KX7 sing 190 n y 
C09 C10 KX7 sing 191 n y 
O14 C13 KX7 sing 192 n n 
C13 C12 KX7 doub 193 n y 
C10 C11 KX7 doub 194 n y 
C12 C11 KX7 sing 195 n y 
C01 H012 KX7 sing 196 n n 
C01 H011 KX7 sing 197 n n 
C02 H021 KX7 sing 198 n n 
N04 H041 KX7 sing 199 n n 
C09 H091 KX7 sing 200 n n 
C10 H101 KX7 sing 201 n n 
C11 H111 KX7 sing 202 n n 
C12 H121 KX7 sing 203 n n 
O14 H141 KX7 sing 204 n n 
C16 H161 KX7 sing 205 n n 
C18 H181 KX7 sing 206 n n 
C19 H191 KX7 sing 207 n n 
C20 H201 KX7 sing 208 n n 
#
_atom_sites.entry_id                     7WRD 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CA A 1 1201 1201 CA CA . 
F 3 KX7 A 1 1202 1301 KX7 LIG . 
G 2 CA B 1 1201 1201 CA CA . 
H 3 KX7 B 1 1202 1301 KX7 LIG . 
I 2 CA C 1 1201 1201 CA CA . 
J 3 KX7 C 1 1202 1301 KX7 LIG . 
K 2 CA D 1 1201 1201 CA CA . 
L 3 KX7 D 1 1202 1301 KX7 LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 KX7 . . . H 3 160.995 125.452 162.773 1 40.91 ? C01 KX7 1202 B 1 
HETATM 2 C C02 KX7 . . . H 3 161.015 126.851 163.209 1 40.91 ? C02 KX7 1202 B 1 
HETATM 3 C C03 KX7 . . . H 3 162.324 127.473 163.21 1 40.91 ? C03 KX7 1202 B 1 
HETATM 4 N N04 KX7 . . . H 3 163.111 127.327 162.038 1 40.91 ? N04 KX7 1202 B 1 
HETATM 5 C C05 KX7 . . . H 3 162.803 126.177 161.164 1 40.91 ? C05 KX7 1202 B 1 
HETATM 6 O O06 KX7 . . . H 3 163.422 126.026 160.173 1 40.91 ? O06 KX7 1202 B 1 
HETATM 7 N N07 KX7 . . . H 3 161.735 125.203 161.521 1 40.91 ? N07 KX7 1202 B 1 
HETATM 8 C C08 KX7 . . . H 3 161.377 124.075 160.721 1 40.91 ? C08 KX7 1202 B 1 
HETATM 9 C C09 KX7 . . . H 3 161.694 122.806 161.128 1 40.91 ? C09 KX7 1202 B 1 
HETATM 10 C C10 KX7 . . . H 3 161.309 121.741 160.341 1 40.91 ? C10 KX7 1202 B 1 
HETATM 11 C C11 KX7 . . . H 3 160.624 121.955 159.164 1 40.91 ? C11 KX7 1202 B 1 
HETATM 12 C C12 KX7 . . . H 3 160.3 123.232 158.769 1 40.91 ? C12 KX7 1202 B 1 
HETATM 13 C C13 KX7 . . . H 3 160.681 124.291 159.558 1 40.91 ? C13 KX7 1202 B 1 
HETATM 14 O O14 KX7 . . . H 3 160.364 125.595 159.174 1 40.91 ? O14 KX7 1202 B 1 
HETATM 15 C C15 KX7 . . . H 3 162.555 128.563 164.222 1 40.91 ? C15 KX7 1202 B 1 
HETATM 16 C C16 KX7 . . . H 3 161.46 129.166 164.78 1 40.91 ? C16 KX7 1202 B 1 
HETATM 17 C C17 KX7 . . . H 3 161.64 130.152 165.715 1 40.91 ? C17 KX7 1202 B 1 
HETATM 18 C C18 KX7 . . . H 3 162.908 130.517 166.11 1 40.91 ? C18 KX7 1202 B 1 
HETATM 19 C C19 KX7 . . . H 3 164.006 129.91 165.535 1 40.91 ? C19 KX7 1202 B 1 
HETATM 20 C C20 KX7 . . . H 3 163.824 128.924 164.589 1 40.91 ? C20 KX7 1202 B 1 
HETATM 21 N N21 KX7 . . . H 3 160.484 130.781 166.293 1 40.91 ? N21 KX7 1202 B 1 
HETATM 22 O O22 KX7 . . . H 3 160.611 131.576 167.141 1 40.91 ? O22 KX7 1202 B 1 
HETATM 23 O O23 KX7 . . . H 3 159.216 130.432 165.823 1 40.91 ? O23 KX7 1202 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           58 
_model_server_stats.create_model_time_ms    402 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#