data_7WRT # _model_server_result.job_id Gr6ZBgbSWcZdVZOuEq44Xg _model_server_result.datetime_utc '2024-11-27 18:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wrt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":801}' # _entry.id 7WRT # _exptl.entry_id 7WRT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.084 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ERYTHOSE-4-PHOSPHATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.308 _cell.angle_beta 88.696 _cell.angle_gamma 73.459 _cell.entry_id 7WRT _cell.length_a 72.68 _cell.length_b 88.86 _cell.length_c 117.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WRT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,Q,R 1 1 C,D,K,L,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 180 A ASP 159 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OD1 ASN 210 A ASN 189 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc3 A O ILE 212 A ILE 191 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 E O2A TPP . A TPP 701 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc5 E O2B TPP . A TPP 701 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc6 F CA CA . A CA 702 1_555 Q O HOH . A HOH 817 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc7 B OD2 ASP 180 B ASP 159 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc8 B OD1 ASN 210 B ASN 189 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc9 B O ILE 212 B ILE 191 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc10 I O1A TPP . B TPP 802 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc11 I O1B TPP . B TPP 802 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc12 I O3B TPP . B TPP 802 1_555 J CA CA . B CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.01 ? metalc ? metalc13 J CA CA . B CA 803 1_555 R O HOH . B HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc14 C OD2 ASP 180 C ASP 159 1_555 L CA CA . C CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc15 C OD1 ASN 210 C ASN 189 1_555 L CA CA . C CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc16 C O ILE 212 C ILE 191 1_555 L CA CA . C CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc17 K O2A TPP . C TPP 701 1_555 L CA CA . C CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc18 D OD2 ASP 180 D ASP 159 1_555 P CA CA . D CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc19 D OD1 ASN 210 D ASN 189 1_555 P CA CA . D CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc20 D O ILE 212 D ILE 191 1_555 P CA CA . D CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc21 O O1A TPP . D TPP 802 1_555 P CA CA . D CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc22 O O1B TPP . D TPP 802 1_555 P CA CA . D CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc23 P CA CA . D CA 803 1_555 T O HOH . D HOH 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? # _chem_comp.formula 'C4 H9 O7 P' _chem_comp.formula_weight 200.084 _chem_comp.id E4P _chem_comp.mon_nstd_flag . _chem_comp.name ERYTHOSE-4-PHOSPHATE _chem_comp.type saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 E4P doub 70 n n C1 C2 E4P sing 71 n n C1 H1 E4P sing 72 n n C2 O2 E4P sing 73 n n C2 C3 E4P sing 74 n n C2 H2 E4P sing 75 n n O2 HO2 E4P sing 76 n n C3 O3 E4P sing 77 n n C3 C4 E4P sing 78 n n C3 H3 E4P sing 79 n n O3 HO3 E4P sing 80 n n C4 O4 E4P sing 81 n n C4 H41 E4P sing 82 n n C4 H42 E4P sing 83 n n O4 P E4P sing 84 n n P O1P E4P doub 85 n n P O2P E4P sing 86 n n P O3P E4P sing 87 n n O2P HOP2 E4P sing 88 n n O3P HOP3 E4P sing 89 n n # _atom_sites.entry_id 7WRT _atom_sites.fract_transf_matrix[1][1] 0.013759 _atom_sites.fract_transf_matrix[1][2] -0.004086 _atom_sites.fract_transf_matrix[1][3] 0.001005 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011739 _atom_sites.fract_transf_matrix[2][3] -0.003832 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 TPP A 1 701 701 TPP TPP . F 3 CA A 1 702 702 CA CA . G 4 E4P A 1 703 801 E4P E4P . H 4 E4P B 1 801 801 E4P E4P . I 2 TPP B 1 802 701 TPP TPP . J 3 CA B 1 803 702 CA CA . K 2 TPP C 1 701 701 TPP TPP . L 3 CA C 1 702 702 CA CA . M 4 E4P C 1 703 801 E4P E4P . N 4 E4P D 1 801 801 E4P E4P . O 2 TPP D 1 802 701 TPP TPP . P 3 CA D 1 803 702 CA CA . Q 5 HOH A 1 801 10 HOH HOH . Q 5 HOH A 2 802 171 HOH HOH . Q 5 HOH A 3 803 150 HOH HOH . Q 5 HOH A 4 804 81 HOH HOH . Q 5 HOH A 5 805 101 HOH HOH . Q 5 HOH A 6 806 130 HOH HOH . Q 5 HOH A 7 807 15 HOH HOH . Q 5 HOH A 8 808 151 HOH HOH . Q 5 HOH A 9 809 97 HOH HOH . Q 5 HOH A 10 810 82 HOH HOH . Q 5 HOH A 11 811 27 HOH HOH . Q 5 HOH A 12 812 16 HOH HOH . Q 5 HOH A 13 813 141 HOH HOH . Q 5 HOH A 14 814 145 HOH HOH . Q 5 HOH A 15 815 61 HOH HOH . Q 5 HOH A 16 816 86 HOH HOH . Q 5 HOH A 17 817 25 HOH HOH . Q 5 HOH A 18 818 180 HOH HOH . Q 5 HOH A 19 819 9 HOH HOH . Q 5 HOH A 20 820 8 HOH HOH . Q 5 HOH A 21 821 26 HOH HOH . Q 5 HOH A 22 822 87 HOH HOH . Q 5 HOH A 23 823 137 HOH HOH . Q 5 HOH A 24 824 28 HOH HOH . Q 5 HOH A 25 825 66 HOH HOH . Q 5 HOH A 26 826 59 HOH HOH . Q 5 HOH A 27 827 159 HOH HOH . Q 5 HOH A 28 828 118 HOH HOH . Q 5 HOH A 29 829 24 HOH HOH . Q 5 HOH A 30 830 157 HOH HOH . Q 5 HOH A 31 831 65 HOH HOH . Q 5 HOH A 32 832 104 HOH HOH . Q 5 HOH A 33 833 116 HOH HOH . Q 5 HOH A 34 834 63 HOH HOH . Q 5 HOH A 35 835 40 HOH HOH . Q 5 HOH A 36 836 102 HOH HOH . Q 5 HOH A 37 837 158 HOH HOH . Q 5 HOH A 38 838 36 HOH HOH . Q 5 HOH A 39 839 80 HOH HOH . Q 5 HOH A 40 840 98 HOH HOH . Q 5 HOH A 41 841 38 HOH HOH . Q 5 HOH A 42 842 181 HOH HOH . Q 5 HOH A 43 843 177 HOH HOH . Q 5 HOH A 44 844 94 HOH HOH . Q 5 HOH A 45 845 74 HOH HOH . Q 5 HOH A 46 846 124 HOH HOH . Q 5 HOH A 47 847 53 HOH HOH . Q 5 HOH A 48 848 107 HOH HOH . Q 5 HOH A 49 849 4 HOH HOH . Q 5 HOH A 50 850 58 HOH HOH . Q 5 HOH A 51 851 17 HOH HOH . Q 5 HOH A 52 852 50 HOH HOH . Q 5 HOH A 53 853 156 HOH HOH . Q 5 HOH A 54 854 22 HOH HOH . Q 5 HOH A 55 855 125 HOH HOH . Q 5 HOH A 56 856 109 HOH HOH . R 5 HOH B 1 901 71 HOH HOH . R 5 HOH B 2 902 132 HOH HOH . R 5 HOH B 3 903 34 HOH HOH . R 5 HOH B 4 904 95 HOH HOH . R 5 HOH B 5 905 111 HOH HOH . R 5 HOH B 6 906 149 HOH HOH . R 5 HOH B 7 907 90 HOH HOH . R 5 HOH B 8 908 105 HOH HOH . R 5 HOH B 9 909 144 HOH HOH . R 5 HOH B 10 910 18 HOH HOH . R 5 HOH B 11 911 70 HOH HOH . R 5 HOH B 12 912 78 HOH HOH . R 5 HOH B 13 913 100 HOH HOH . R 5 HOH B 14 914 33 HOH HOH . R 5 HOH B 15 915 37 HOH HOH . R 5 HOH B 16 916 170 HOH HOH . R 5 HOH B 17 917 52 HOH HOH . R 5 HOH B 18 918 85 HOH HOH . R 5 HOH B 19 919 84 HOH HOH . R 5 HOH B 20 920 69 HOH HOH . R 5 HOH B 21 921 21 HOH HOH . R 5 HOH B 22 922 11 HOH HOH . R 5 HOH B 23 923 135 HOH HOH . R 5 HOH B 24 924 29 HOH HOH . R 5 HOH B 25 925 49 HOH HOH . R 5 HOH B 26 926 43 HOH HOH . R 5 HOH B 27 927 2 HOH HOH . R 5 HOH B 28 928 167 HOH HOH . R 5 HOH B 29 929 62 HOH HOH . R 5 HOH B 30 930 75 HOH HOH . R 5 HOH B 31 931 176 HOH HOH . R 5 HOH B 32 932 174 HOH HOH . R 5 HOH B 33 933 164 HOH HOH . R 5 HOH B 34 934 42 HOH HOH . R 5 HOH B 35 935 117 HOH HOH . R 5 HOH B 36 936 57 HOH HOH . R 5 HOH B 37 937 122 HOH HOH . R 5 HOH B 38 938 51 HOH HOH . R 5 HOH B 39 939 3 HOH HOH . R 5 HOH B 40 940 155 HOH HOH . R 5 HOH B 41 941 47 HOH HOH . R 5 HOH B 42 942 136 HOH HOH . R 5 HOH B 43 943 166 HOH HOH . R 5 HOH B 44 944 35 HOH HOH . R 5 HOH B 45 945 154 HOH HOH . R 5 HOH B 46 946 115 HOH HOH . R 5 HOH B 47 947 44 HOH HOH . R 5 HOH B 48 948 163 HOH HOH . R 5 HOH B 49 949 128 HOH HOH . R 5 HOH B 50 950 54 HOH HOH . R 5 HOH B 51 951 1 HOH HOH . R 5 HOH B 52 952 6 HOH HOH . R 5 HOH B 53 953 20 HOH HOH . R 5 HOH B 54 954 103 HOH HOH . R 5 HOH B 55 955 45 HOH HOH . R 5 HOH B 56 956 146 HOH HOH . R 5 HOH B 57 957 143 HOH HOH . R 5 HOH B 58 958 182 HOH HOH . R 5 HOH B 59 959 153 HOH HOH . R 5 HOH B 60 960 179 HOH HOH . R 5 HOH B 61 961 46 HOH HOH . S 5 HOH C 1 801 142 HOH HOH . S 5 HOH C 2 802 19 HOH HOH . S 5 HOH C 3 803 88 HOH HOH . S 5 HOH C 4 804 5 HOH HOH . S 5 HOH C 5 805 147 HOH HOH . S 5 HOH C 6 806 31 HOH HOH . S 5 HOH C 7 807 120 HOH HOH . S 5 HOH C 8 808 133 HOH HOH . S 5 HOH C 9 809 41 HOH HOH . S 5 HOH C 10 810 168 HOH HOH . S 5 HOH C 11 811 139 HOH HOH . S 5 HOH C 12 812 160 HOH HOH . S 5 HOH C 13 813 99 HOH HOH . S 5 HOH C 14 814 83 HOH HOH . S 5 HOH C 15 815 56 HOH HOH . S 5 HOH C 16 816 113 HOH HOH . S 5 HOH C 17 817 48 HOH HOH . S 5 HOH C 18 818 123 HOH HOH . S 5 HOH C 19 819 140 HOH HOH . S 5 HOH C 20 820 169 HOH HOH . S 5 HOH C 21 821 127 HOH HOH . S 5 HOH C 22 822 73 HOH HOH . S 5 HOH C 23 823 183 HOH HOH . S 5 HOH C 24 824 175 HOH HOH . S 5 HOH C 25 825 138 HOH HOH . S 5 HOH C 26 826 178 HOH HOH . S 5 HOH C 27 827 32 HOH HOH . S 5 HOH C 28 828 119 HOH HOH . S 5 HOH C 29 829 114 HOH HOH . S 5 HOH C 30 830 96 HOH HOH . S 5 HOH C 31 831 152 HOH HOH . S 5 HOH C 32 832 79 HOH HOH . S 5 HOH C 33 833 172 HOH HOH . S 5 HOH C 34 834 162 HOH HOH . S 5 HOH C 35 835 110 HOH HOH . S 5 HOH C 36 836 108 HOH HOH . S 5 HOH C 37 837 91 HOH HOH . S 5 HOH C 38 838 161 HOH HOH . T 5 HOH D 1 901 121 HOH HOH . T 5 HOH D 2 902 106 HOH HOH . T 5 HOH D 3 903 67 HOH HOH . T 5 HOH D 4 904 30 HOH HOH . T 5 HOH D 5 905 12 HOH HOH . T 5 HOH D 6 906 7 HOH HOH . T 5 HOH D 7 907 148 HOH HOH . T 5 HOH D 8 908 23 HOH HOH . T 5 HOH D 9 909 129 HOH HOH . T 5 HOH D 10 910 131 HOH HOH . T 5 HOH D 11 911 92 HOH HOH . T 5 HOH D 12 912 134 HOH HOH . T 5 HOH D 13 913 68 HOH HOH . T 5 HOH D 14 914 76 HOH HOH . T 5 HOH D 15 915 173 HOH HOH . T 5 HOH D 16 916 126 HOH HOH . T 5 HOH D 17 917 93 HOH HOH . T 5 HOH D 18 918 14 HOH HOH . T 5 HOH D 19 919 89 HOH HOH . T 5 HOH D 20 920 165 HOH HOH . T 5 HOH D 21 921 39 HOH HOH . T 5 HOH D 22 922 112 HOH HOH . T 5 HOH D 23 923 60 HOH HOH . T 5 HOH D 24 924 77 HOH HOH . T 5 HOH D 25 925 72 HOH HOH . T 5 HOH D 26 926 13 HOH HOH . T 5 HOH D 27 927 55 HOH HOH . T 5 HOH D 28 928 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E4P . . . H 4 49.47 97.225 84.738 1 64.15 0 C1 E4P 801 B 1 HETATM 2 O O1 E4P . . . H 4 49.818 98.151 85.442 1 69.91 0 O1 E4P 801 B 1 HETATM 3 C C2 E4P . . . H 4 48.881 97.487 83.374 1 62.65 0 C2 E4P 801 B 1 HETATM 4 O O2 E4P . . . H 4 49.124 98.825 82.962 1 52.63 0 O2 E4P 801 B 1 HETATM 5 C C3 E4P . . . H 4 47.379 97.231 83.436 1 62.86 0 C3 E4P 801 B 1 HETATM 6 O O3 E4P . . . H 4 47.22 95.887 83.915 1 69.82 0 O3 E4P 801 B 1 HETATM 7 C C4 E4P . . . H 4 46.73 97.349 82.055 1 54.46 0 C4 E4P 801 B 1 HETATM 8 O O4 E4P . . . H 4 45.348 97.461 82.189 1 48.89 0 O4 E4P 801 B 1 HETATM 9 P P E4P . . . H 4 44.289 97.218 81.02 1 56.99 0 P E4P 801 B 1 HETATM 10 O O1P E4P . . . H 4 45.092 96.931 79.793 1 50.92 0 O1P E4P 801 B 1 HETATM 11 O O2P E4P . . . H 4 43.477 98.494 80.899 1 53.09 0 O2P E4P 801 B 1 HETATM 12 O O3P E4P . . . H 4 43.472 96.051 81.577 1 50.38 0 O3P E4P 801 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 12 #