data_7WSB # _model_server_result.job_id Ww9X9Jc5dyeob86kKxlMqQ _model_server_result.datetime_utc '2024-10-20 03:56:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wsb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":401}' # _entry.id 7WSB # _exptl.entry_id 7WSB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.838 _cell.angle_gamma 90 _cell.entry_id 7WSB _cell.length_a 104.05 _cell.length_b 85.447 _cell.length_c 160.768 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WSB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,O,CA,DA 1 1 C,D,P,Q,R,S,T,U,V,EA,FA 2 1 E,F,W,X,Y,Z,AA,BA,GA,HA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 L N N ? 2 P N N ? 2 S N N ? 2 W N N ? 2 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 144 A HIS 129 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 A OD1 ASP 146 A ASP 131 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc3 A NE2 HIS 220 A HIS 205 1_555 G CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 G CO CO . A CO 401 1_555 I O5 AKG . A AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc5 G CO CO . A CO 401 1_555 I O2 AKG . A AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc6 G CO CO . A CO 401 1_555 CA O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 B NE2 HIS 144 B HIS 129 1_555 L CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc8 B OD1 ASP 146 B ASP 131 1_555 L CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 B NE2 HIS 220 B HIS 205 1_555 L CO CO . B CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc10 L CO CO . B CO 401 1_555 N O1 AKG . B AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc11 L CO CO . B CO 401 1_555 N O5 AKG . B AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc12 L CO CO . B CO 401 1_555 DA O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc13 C NE2 HIS 144 C HIS 129 1_555 P CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc14 C OD1 ASP 146 C ASP 131 1_555 P CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc15 C NE2 HIS 220 C HIS 205 1_555 P CO CO . C CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc16 P CO CO . C CO 401 1_555 R O2 AKG . C AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc17 P CO CO . C CO 401 1_555 R O5 AKG . C AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc18 P CO CO . C CO 401 1_555 EA O HOH . C HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc19 D NE2 HIS 144 D HIS 129 1_555 S CO CO . D CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc20 D OD1 ASP 146 D ASP 131 1_555 S CO CO . D CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc21 D NE2 HIS 220 D HIS 205 1_555 S CO CO . D CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc22 S CO CO . D CO 401 1_555 U O5 AKG . D AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc23 S CO CO . D CO 401 1_555 U O1 AKG . D AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc24 S CO CO . D CO 401 1_555 FA O HOH . D HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc25 E NE2 HIS 144 E HIS 129 1_555 W CO CO . E CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc26 E OD1 ASP 146 E ASP 131 1_555 W CO CO . E CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc27 E NE2 HIS 220 E HIS 205 1_555 W CO CO . E CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc28 W CO CO . E CO 401 1_555 Y O2 AKG . E AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc29 W CO CO . E CO 401 1_555 Y O5 AKG . E AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc30 W CO CO . E CO 401 1_555 GA O HOH . E HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc31 F NE2 HIS 144 F HIS 129 1_555 Z CO CO . F CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc32 F OD1 ASP 146 F ASP 131 1_555 Z CO CO . F CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc33 F NE2 HIS 220 F HIS 205 1_555 Z CO CO . F CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc34 Z CO CO . F CO 401 1_555 BA O5 AKG . F AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc35 Z CO CO . F CO 401 1_555 BA O2 AKG . F AKG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc36 Z CO CO . F CO 401 1_555 HA O HOH . F HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WSB _atom_sites.fract_transf_matrix[1][1] 0.009611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003279 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CO A 1 401 401 CO CO . H 3 4IL A 1 402 601 4IL 4Q1 . I 4 AKG A 1 403 701 AKG AKG . J 5 PEG A 1 404 1 PEG PEG . K 6 GOL A 1 405 11 GOL GOL . L 2 CO B 1 401 401 CO CO . M 3 4IL B 1 402 601 4IL 4Q1 . N 4 AKG B 1 403 701 AKG AKG . O 5 PEG B 1 404 31 PEG PEG . P 2 CO C 1 401 401 CO CO . Q 3 4IL C 1 402 601 4IL 4Q1 . R 4 AKG C 1 403 701 AKG AKG . S 2 CO D 1 401 401 CO CO . T 3 4IL D 1 402 601 4IL 4Q1 . U 4 AKG D 1 403 701 AKG AKG . V 6 GOL D 1 404 21 GOL GOL . W 2 CO E 1 401 401 CO CO . X 3 4IL E 1 402 601 4IL 4Q1 . Y 4 AKG E 1 403 701 AKG AKG . Z 2 CO F 1 401 401 CO CO . AA 3 4IL F 1 402 601 4IL 4Q1 . BA 4 AKG F 1 403 701 AKG AKG . CA 7 HOH A 1 501 86 HOH HOH . CA 7 HOH A 2 502 33 HOH HOH . CA 7 HOH A 3 503 74 HOH HOH . CA 7 HOH A 4 504 131 HOH HOH . CA 7 HOH A 5 505 43 HOH HOH . CA 7 HOH A 6 506 60 HOH HOH . CA 7 HOH A 7 507 27 HOH HOH . CA 7 HOH A 8 508 44 HOH HOH . CA 7 HOH A 9 509 58 HOH HOH . CA 7 HOH A 10 510 53 HOH HOH . CA 7 HOH A 11 511 80 HOH HOH . CA 7 HOH A 12 512 82 HOH HOH . CA 7 HOH A 13 513 18 HOH HOH . CA 7 HOH A 14 514 29 HOH HOH . CA 7 HOH A 15 515 28 HOH HOH . CA 7 HOH A 16 516 34 HOH HOH . CA 7 HOH A 17 517 61 HOH HOH . CA 7 HOH A 18 518 5 HOH HOH . CA 7 HOH A 19 519 76 HOH HOH . CA 7 HOH A 20 520 54 HOH HOH . CA 7 HOH A 21 521 35 HOH HOH . CA 7 HOH A 22 522 22 HOH HOH . CA 7 HOH A 23 523 40 HOH HOH . CA 7 HOH A 24 524 120 HOH HOH . CA 7 HOH A 25 525 129 HOH HOH . CA 7 HOH A 26 526 126 HOH HOH . CA 7 HOH A 27 527 137 HOH HOH . CA 7 HOH A 28 528 110 HOH HOH . CA 7 HOH A 29 529 89 HOH HOH . CA 7 HOH A 30 530 56 HOH HOH . CA 7 HOH A 31 531 105 HOH HOH . DA 7 HOH B 1 501 132 HOH HOH . DA 7 HOH B 2 502 31 HOH HOH . DA 7 HOH B 3 503 63 HOH HOH . DA 7 HOH B 4 504 117 HOH HOH . DA 7 HOH B 5 505 59 HOH HOH . DA 7 HOH B 6 506 73 HOH HOH . DA 7 HOH B 7 507 24 HOH HOH . DA 7 HOH B 8 508 39 HOH HOH . DA 7 HOH B 9 509 12 HOH HOH . DA 7 HOH B 10 510 41 HOH HOH . DA 7 HOH B 11 511 101 HOH HOH . DA 7 HOH B 12 512 7 HOH HOH . DA 7 HOH B 13 513 78 HOH HOH . DA 7 HOH B 14 514 112 HOH HOH . DA 7 HOH B 15 515 47 HOH HOH . DA 7 HOH B 16 516 85 HOH HOH . DA 7 HOH B 17 517 42 HOH HOH . DA 7 HOH B 18 518 71 HOH HOH . DA 7 HOH B 19 519 97 HOH HOH . DA 7 HOH B 20 520 118 HOH HOH . DA 7 HOH B 21 521 57 HOH HOH . DA 7 HOH B 22 522 10 HOH HOH . DA 7 HOH B 23 523 21 HOH HOH . DA 7 HOH B 24 524 136 HOH HOH . DA 7 HOH B 25 525 96 HOH HOH . DA 7 HOH B 26 526 93 HOH HOH . DA 7 HOH B 27 527 87 HOH HOH . DA 7 HOH B 28 528 108 HOH HOH . EA 7 HOH C 1 501 15 HOH HOH . EA 7 HOH C 2 502 11 HOH HOH . EA 7 HOH C 3 503 32 HOH HOH . EA 7 HOH C 4 504 45 HOH HOH . EA 7 HOH C 5 505 1 HOH HOH . EA 7 HOH C 6 506 65 HOH HOH . EA 7 HOH C 7 507 134 HOH HOH . EA 7 HOH C 8 508 50 HOH HOH . EA 7 HOH C 9 509 4 HOH HOH . EA 7 HOH C 10 510 67 HOH HOH . EA 7 HOH C 11 511 30 HOH HOH . EA 7 HOH C 12 512 26 HOH HOH . EA 7 HOH C 13 513 55 HOH HOH . EA 7 HOH C 14 514 14 HOH HOH . EA 7 HOH C 15 515 17 HOH HOH . EA 7 HOH C 16 516 9 HOH HOH . EA 7 HOH C 17 517 6 HOH HOH . EA 7 HOH C 18 518 69 HOH HOH . EA 7 HOH C 19 519 20 HOH HOH . EA 7 HOH C 20 520 99 HOH HOH . EA 7 HOH C 21 521 102 HOH HOH . EA 7 HOH C 22 522 113 HOH HOH . EA 7 HOH C 23 523 135 HOH HOH . EA 7 HOH C 24 524 72 HOH HOH . EA 7 HOH C 25 525 36 HOH HOH . EA 7 HOH C 26 526 84 HOH HOH . EA 7 HOH C 27 527 16 HOH HOH . EA 7 HOH C 28 528 81 HOH HOH . EA 7 HOH C 29 529 115 HOH HOH . FA 7 HOH D 1 501 79 HOH HOH . FA 7 HOH D 2 502 127 HOH HOH . FA 7 HOH D 3 503 116 HOH HOH . FA 7 HOH D 4 504 2 HOH HOH . FA 7 HOH D 5 505 90 HOH HOH . FA 7 HOH D 6 506 98 HOH HOH . FA 7 HOH D 7 507 38 HOH HOH . FA 7 HOH D 8 508 121 HOH HOH . FA 7 HOH D 9 509 19 HOH HOH . FA 7 HOH D 10 510 122 HOH HOH . FA 7 HOH D 11 511 119 HOH HOH . FA 7 HOH D 12 512 68 HOH HOH . FA 7 HOH D 13 513 106 HOH HOH . FA 7 HOH D 14 514 13 HOH HOH . FA 7 HOH D 15 515 23 HOH HOH . FA 7 HOH D 16 516 91 HOH HOH . FA 7 HOH D 17 517 75 HOH HOH . FA 7 HOH D 18 518 66 HOH HOH . FA 7 HOH D 19 519 8 HOH HOH . FA 7 HOH D 20 520 130 HOH HOH . FA 7 HOH D 21 521 128 HOH HOH . FA 7 HOH D 22 522 114 HOH HOH . FA 7 HOH D 23 523 123 HOH HOH . FA 7 HOH D 24 524 62 HOH HOH . FA 7 HOH D 25 525 107 HOH HOH . FA 7 HOH D 26 526 64 HOH HOH . FA 7 HOH D 27 527 46 HOH HOH . FA 7 HOH D 28 528 88 HOH HOH . FA 7 HOH D 29 529 111 HOH HOH . FA 7 HOH D 30 530 109 HOH HOH . FA 7 HOH D 31 531 92 HOH HOH . FA 7 HOH D 32 532 104 HOH HOH . FA 7 HOH D 33 533 52 HOH HOH . FA 7 HOH D 34 534 124 HOH HOH . FA 7 HOH D 35 535 125 HOH HOH . GA 7 HOH E 1 501 51 HOH HOH . GA 7 HOH E 2 502 133 HOH HOH . GA 7 HOH E 3 503 48 HOH HOH . GA 7 HOH E 4 504 83 HOH HOH . GA 7 HOH E 5 505 103 HOH HOH . GA 7 HOH E 6 506 37 HOH HOH . GA 7 HOH E 7 507 77 HOH HOH . GA 7 HOH E 8 508 49 HOH HOH . HA 7 HOH F 1 501 3 HOH HOH . HA 7 HOH F 2 502 70 HOH HOH . HA 7 HOH F 3 503 100 HOH HOH . HA 7 HOH F 4 504 25 HOH HOH . HA 7 HOH F 5 505 94 HOH HOH . HA 7 HOH F 6 506 95 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.135 _atom_site.Cartn_y -20.876 _atom_site.Cartn_z 44.636 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #