data_7WSX # _model_server_result.job_id soh2akz4Qa2hlGPcpjCJEA _model_server_result.datetime_utc '2024-11-29 08:56:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wsx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7WSX # _exptl.entry_id 7WSX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.508 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE-S-O HYBRID CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.85 _cell.angle_gamma 90 _cell.entry_id 7WSX _cell.length_a 64.93 _cell.length_b 70.56 _cell.length_c 106.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 346 A GLY 346 1_555 A N CSS 347 A CSS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CSS 347 A CSS 347 1_555 A N ASP 348 A ASP 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C GLY 346 B GLY 346 1_555 B N CSS 347 B CSS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C CSS 347 B CSS 347 1_555 B N ASP 348 B ASP 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 193 A HIS 193 1_555 C FE7 FS2 . A FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc2 A OE2 GLU 217 A GLU 217 1_555 C FE7 FS2 . A FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.706 ? metalc ? metalc3 A SG CYS 261 A CYS 261 1_555 C FE6 FS2 . A FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 A SG CSS 347 A CSS 347 1_555 C FE8 FS2 . A FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 A SD CSS 347 A CSS 347 1_555 C FE8 FS2 . A FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc6 A SG CYS 375 A CYS 375 1_555 C FE5 FS2 . A FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 A SG CYS 400 A CYS 400 1_555 C FE7 FS2 . A FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc8 B NE2 HIS 193 B HIS 193 1_555 D FE7 FS2 . B FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc9 B OE2 GLU 217 B GLU 217 1_555 D FE7 FS2 . B FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc10 B SD CSS 347 B CSS 347 1_555 D FE8 FS2 . B FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc11 B SG CYS 375 B CYS 375 1_555 D FE5 FS2 . B FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc12 B SG CYS 400 B CYS 400 1_555 D FE7 FS2 . B FS2 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'Fe4 O3 S2' _chem_comp.formula_weight 335.508 _chem_comp.id FS2 _chem_comp.mon_nstd_flag . _chem_comp.name 'FE-S-O HYBRID CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE5 FE6 FS2 sing 97 n n FE5 S5 FS2 sing 98 n n FE5 S6 FS2 sing 99 n n FE5 O1 FS2 sing 100 n n FE6 FE8 FS2 sing 101 n n FE6 S5 FS2 sing 102 n n FE6 S6 FS2 sing 103 n n FE6 O8 FS2 sing 104 n n FE7 O9 FS2 sing 105 n n FE7 O1 FS2 sing 106 n n FE8 S6 FS2 sing 107 n n FE8 O8 FS2 sing 108 n n FE8 O9 FS2 sing 109 n n FE8 O1 FS2 sing 110 n n # _atom_sites.entry_id 7WSX _atom_sites.fract_transf_matrix[1][1] 0.015401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004665 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FS2 A 1 601 601 FS2 FS2 . D 2 FS2 B 1 601 601 FS2 FS2 . E 3 HOH B 1 701 1 HOH HOH . E 3 HOH B 2 702 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE5 FS2 . . . C 2 -41.68 -2.81 7.457 1 121.15 ? FE5 FS2 601 A 1 HETATM 2 FE FE6 FS2 . . . C 2 -39.508 -4.005 8.558 1 96.26 ? FE6 FS2 601 A 1 HETATM 3 FE FE7 FS2 . . . C 2 -42.16 -0.754 10.376 1 73.99 ? FE7 FS2 601 A 1 HETATM 4 FE FE8 FS2 . . . C 2 -42.03 -4.249 10.364 1 125.89 ? FE8 FS2 601 A 1 HETATM 5 S S5 FS2 . . . C 2 -39.522 -2.088 7.53 1 78.91 ? S5 FS2 601 A 1 HETATM 6 S S6 FS2 . . . C 2 -41.471 -5.021 8.125 1 87.26 ? S6 FS2 601 A 1 HETATM 7 O O8 FS2 . . . C 2 -39.893 -3.465 10.516 1 84.91 ? O8 FS2 601 A 1 HETATM 8 O O9 FS2 . . . C 2 -42.517 -2.629 11.302 1 92.72 ? O9 FS2 601 A 1 HETATM 9 O O1 FS2 . . . C 2 -42.204 -2.462 9.017 1 74.98 ? O1 FS2 601 A 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #