data_7WTD # _model_server_result.job_id t1myir3G3yp2YuJ79tSpUw _model_server_result.datetime_utc '2024-12-04 19:04:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wtd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2001}' # _entry.id 7WTD # _exptl.entry_id 7WTD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WTD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 752 A CYS 752 1_555 A SG CYS 786 A CYS 786 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 752 B CYS 752 1_555 B SG CYS 786 B CYS 786 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 C SG CYS 752 C CYS 752 1_555 C SG CYS 786 C CYS 786 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 D SG CYS 752 D CYS 752 1_555 D SG CYS 786 D CYS 786 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 C CE LYS 1056 C LYS 1056 1_555 F N7A COA . C COA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 F N6A COA . C COA 2001 1_555 D C ASP 81 D ASP 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WTD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP C 1 2000 2000 ATP ATP . F 3 COA C 1 2001 2001 COA COA . G 3 COA D 1 2001 2001 COA COA . H 2 ATP D 1 2002 2000 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 180.661 132.122 167.904 1 232.62 ? N1A COA 2001 C 1 HETATM 2 C C2A COA . . . F 3 181.447 132.532 166.876 1 232.62 ? C2A COA 2001 C 1 HETATM 3 N N3A COA . . . F 3 181.943 133.83 166.833 1 232.62 ? N3A COA 2001 C 1 HETATM 4 C C4A COA . . . F 3 181.641 134.717 167.835 1 232.62 ? C4A COA 2001 C 1 HETATM 5 C C5A COA . . . F 3 180.879 134.321 168.852 1 232.62 ? C5A COA 2001 C 1 HETATM 6 C C6A COA . . . F 3 180.376 132.993 168.876 1 232.62 ? C6A COA 2001 C 1 HETATM 7 N N6A COA . . . F 3 179.535 132.152 169.736 1 232.62 ? N6A COA 2001 C 1 HETATM 8 N N7A COA . . . F 3 180.718 135.378 169.709 1 232.62 ? N7A COA 2001 C 1 HETATM 9 C C8A COA . . . F 3 181.406 136.426 169.208 1 232.62 ? C8A COA 2001 C 1 HETATM 10 N N9A COA . . . F 3 181.979 136.024 168.054 1 232.62 ? N9A COA 2001 C 1 HETATM 11 C C1B COA . . . F 3 182.701 137.224 167.582 1 232.62 ? C1B COA 2001 C 1 HETATM 12 C C2B COA . . . F 3 183.395 136.939 166.486 1 232.62 ? C2B COA 2001 C 1 HETATM 13 O O2B COA . . . F 3 184.788 136.729 166.838 1 232.62 ? O2B COA 2001 C 1 HETATM 14 C C3B COA . . . F 3 183.232 138.204 165.462 1 232.62 ? C3B COA 2001 C 1 HETATM 15 O O3B COA . . . F 3 184.274 139.181 165.638 1 232.62 ? O3B COA 2001 C 1 HETATM 16 P P3B COA . . . F 3 184.509 140.284 164.42 1 232.62 ? P3B COA 2001 C 1 HETATM 17 O O7A COA . . . F 3 185.864 140.794 164.489 1 232.62 ? O7A COA 2001 C 1 HETATM 18 O O8A COA . . . F 3 184.284 139.609 163.063 1 232.62 ? O8A COA 2001 C 1 HETATM 19 O O9A COA . . . F 3 183.515 141.438 164.579 1 232.62 ? O9A COA 2001 C 1 HETATM 20 C C4B COA . . . F 3 182.01 138.738 165.72 1 232.62 ? C4B COA 2001 C 1 HETATM 21 O O4B COA . . . F 3 181.639 138.333 167.162 1 232.62 ? O4B COA 2001 C 1 HETATM 22 C C5B COA . . . F 3 180.997 138.16 164.718 1 232.62 ? C5B COA 2001 C 1 HETATM 23 O O5B COA . . . F 3 181.631 137.996 163.432 1 232.62 ? O5B COA 2001 C 1 HETATM 24 P P1A COA . . . F 3 180.661 137.576 162.132 1 232.62 ? P1A COA 2001 C 1 HETATM 25 O O1A COA . . . F 3 181.129 138.284 160.889 1 232.62 ? O1A COA 2001 C 1 HETATM 26 O O2A COA . . . F 3 179.28 138.038 162.459 1 232.62 ? O2A COA 2001 C 1 HETATM 27 O O3A COA . . . F 3 180.696 135.963 161.846 1 232.62 ? O3A COA 2001 C 1 HETATM 28 P P2A COA . . . F 3 181.927 134.95 162.314 1 232.62 ? P2A COA 2001 C 1 HETATM 29 O O4A COA . . . F 3 181.367 133.608 162.465 1 232.62 ? O4A COA 2001 C 1 HETATM 30 O O5A COA . . . F 3 182.506 135.408 163.607 1 232.62 ? O5A COA 2001 C 1 HETATM 31 O O6A COA . . . F 3 183.103 134.909 161.17 1 232.62 ? O6A COA 2001 C 1 HETATM 32 C CBP COA . . . F 3 185.176 133.584 161.095 1 232.62 ? CBP COA 2001 C 1 HETATM 33 C CCP COA . . . F 3 184.447 134.905 161.563 1 232.62 ? CCP COA 2001 C 1 HETATM 34 C CDP COA . . . F 3 186.658 133.617 161.532 1 232.62 ? CDP COA 2001 C 1 HETATM 35 C CEP COA . . . F 3 185.1 133.491 159.53 1 232.62 ? CEP COA 2001 C 1 HETATM 36 C CAP COA . . . F 3 184.469 132.336 161.691 1 232.62 ? CAP COA 2001 C 1 HETATM 37 O OAP COA . . . F 3 185.084 131.215 161.274 1 232.62 ? OAP COA 2001 C 1 HETATM 38 C C9P COA . . . F 3 184.504 132.384 163.258 1 232.62 ? C9P COA 2001 C 1 HETATM 39 O O9P COA . . . F 3 183.624 132.876 163.852 1 232.62 ? O9P COA 2001 C 1 HETATM 40 N N8P COA . . . F 3 185.645 131.79 164.018 1 232.62 ? N8P COA 2001 C 1 HETATM 41 C C7P COA . . . F 3 185.608 131.867 165.495 1 232.62 ? C7P COA 2001 C 1 HETATM 42 C C6P COA . . . F 3 185.92 130.442 166.109 1 232.62 ? C6P COA 2001 C 1 HETATM 43 C C5P COA . . . F 3 187.303 130.486 166.763 1 232.62 ? C5P COA 2001 C 1 HETATM 44 O O5P COA . . . F 3 187.536 129.827 167.747 1 232.62 ? O5P COA 2001 C 1 HETATM 45 N N4P COA . . . F 3 188.348 131.353 166.17 1 232.62 ? N4P COA 2001 C 1 HETATM 46 C C3P COA . . . F 3 189.694 131.424 166.77 1 232.62 ? C3P COA 2001 C 1 HETATM 47 C C2P COA . . . F 3 190.481 130.234 166.309 1 232.62 ? C2P COA 2001 C 1 HETATM 48 S S1P COA . . . F 3 189.866 129.693 164.663 1 232.62 ? S1P COA 2001 C 1 # _model_server_stats.io_time_ms 137 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 48 #