data_7WVS # _model_server_result.job_id ySDe9tmNkh2kiQctdG4fkQ _model_server_result.datetime_utc '2024-12-29 00:15:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":513}' # _entry.id 7WVS # _exptl.entry_id 7WVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 33 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WVS _cell.length_a 73.555 _cell.length_b 108.76 _cell.length_c 124.176 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (y,z,x)' _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 Y N N ? 3 DA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 MA N N ? 3 NA N N ? 3 OA N N ? 3 PA N N ? 3 QA N N ? 3 RA N N ? 3 SA N N ? 3 TA N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7WVS _atom_sites.fract_transf_matrix[1][1] 0.013595 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009195 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 501 501 SAM SAM . D 3 EDO A 1 502 701 EDO EDO . E 4 GOL A 1 503 901 GOL GOL . F 3 EDO A 1 504 1101 EDO EDO . G 3 EDO A 1 505 1201 EDO EDO . H 3 EDO A 1 506 1301 EDO EDO . I 3 EDO A 1 507 1401 EDO EDO . J 3 EDO A 1 508 1501 EDO EDO . K 3 EDO A 1 509 1601 EDO EDO . L 3 EDO A 1 510 1701 EDO EDO . M 3 EDO A 1 511 1801 EDO EDO . N 4 GOL A 1 512 1901 GOL GOL . O 3 EDO A 1 513 2001 EDO EDO . P 3 EDO A 1 514 2101 EDO EDO . Q 3 EDO A 1 515 2201 EDO EDO . R 3 EDO A 1 516 2301 EDO EDO . S 3 EDO A 1 517 2401 EDO EDO . T 3 EDO A 1 518 2501 EDO EDO . U 3 EDO A 1 519 2601 EDO EDO . V 3 EDO A 1 520 2701 EDO EDO . W 4 GOL A 1 521 2801 GOL GOL . X 4 GOL A 1 522 2901 GOL GOL . Y 3 EDO A 1 523 1201 EDO EDO . Z 5 SO4 A 1 524 3 SO4 SO4 . AA 5 SO4 A 1 525 5 SO4 SO4 . BA 5 SO4 A 1 526 6 SO4 SO4 . CA 5 SO4 A 1 527 7 SO4 SO4 . DA 3 EDO A 1 528 1 EDO EDO . EA 2 SAM B 1 501 501 SAM SAM . FA 3 EDO B 1 502 601 EDO EDO . GA 3 EDO B 1 503 701 EDO EDO . HA 3 EDO B 1 504 801 EDO EDO . IA 3 EDO B 1 505 901 EDO EDO . JA 3 EDO B 1 506 1101 EDO EDO . KA 3 EDO B 1 507 1301 EDO EDO . LA 4 GOL B 1 508 1401 GOL GOL . MA 3 EDO B 1 509 1501 EDO EDO . NA 3 EDO B 1 510 1601 EDO EDO . OA 3 EDO B 1 511 2001 EDO EDO . PA 3 EDO B 1 512 2201 EDO EDO . QA 3 EDO B 1 513 2301 EDO EDO . RA 3 EDO B 1 514 2401 EDO EDO . SA 3 EDO B 1 515 2501 EDO EDO . TA 3 EDO B 1 516 2601 EDO EDO . UA 5 SO4 B 1 517 4 SO4 SO4 . VA 5 SO4 B 1 518 10 SO4 SO4 . WA 6 HOH A 1 601 101 HOH HOH . WA 6 HOH A 2 602 172 HOH HOH . WA 6 HOH A 3 603 201 HOH HOH . WA 6 HOH A 4 604 171 HOH HOH . WA 6 HOH A 5 605 319 HOH HOH . WA 6 HOH A 6 606 196 HOH HOH . WA 6 HOH A 7 607 79 HOH HOH . WA 6 HOH A 8 608 7 HOH HOH . WA 6 HOH A 9 609 263 HOH HOH . WA 6 HOH A 10 610 194 HOH HOH . WA 6 HOH A 11 611 157 HOH HOH . WA 6 HOH A 12 612 300 HOH HOH . WA 6 HOH A 13 613 12 HOH HOH . WA 6 HOH A 14 614 93 HOH HOH . WA 6 HOH A 15 615 9 HOH HOH . WA 6 HOH A 16 616 63 HOH HOH . WA 6 HOH A 17 617 59 HOH HOH . WA 6 HOH A 18 618 116 HOH HOH . WA 6 HOH A 19 619 189 HOH HOH . WA 6 HOH A 20 620 176 HOH HOH . WA 6 HOH A 21 621 218 HOH HOH . WA 6 HOH A 22 622 24 HOH HOH . WA 6 HOH A 23 623 68 HOH HOH . WA 6 HOH A 24 624 105 HOH HOH . WA 6 HOH A 25 625 148 HOH HOH . WA 6 HOH A 26 626 14 HOH HOH . WA 6 HOH A 27 627 76 HOH HOH . WA 6 HOH A 28 628 179 HOH HOH . WA 6 HOH A 29 629 4 HOH HOH . WA 6 HOH A 30 630 13 HOH HOH . WA 6 HOH A 31 631 50 HOH HOH . WA 6 HOH A 32 632 258 HOH HOH . WA 6 HOH A 33 633 66 HOH HOH . WA 6 HOH A 34 634 75 HOH HOH . WA 6 HOH A 35 635 78 HOH HOH . WA 6 HOH A 36 636 336 HOH HOH . WA 6 HOH A 37 637 57 HOH HOH . WA 6 HOH A 38 638 11 HOH HOH . WA 6 HOH A 39 639 299 HOH HOH . WA 6 HOH A 40 640 80 HOH HOH . WA 6 HOH A 41 641 34 HOH HOH . WA 6 HOH A 42 642 47 HOH HOH . WA 6 HOH A 43 643 18 HOH HOH . WA 6 HOH A 44 644 199 HOH HOH . WA 6 HOH A 45 645 10 HOH HOH . WA 6 HOH A 46 646 15 HOH HOH . WA 6 HOH A 47 647 122 HOH HOH . WA 6 HOH A 48 648 125 HOH HOH . WA 6 HOH A 49 649 102 HOH HOH . WA 6 HOH A 50 650 278 HOH HOH . WA 6 HOH A 51 651 55 HOH HOH . WA 6 HOH A 52 652 45 HOH HOH . WA 6 HOH A 53 653 82 HOH HOH . WA 6 HOH A 54 654 17 HOH HOH . WA 6 HOH A 55 655 149 HOH HOH . WA 6 HOH A 56 656 85 HOH HOH . WA 6 HOH A 57 657 86 HOH HOH . WA 6 HOH A 58 658 323 HOH HOH . WA 6 HOH A 59 659 302 HOH HOH . WA 6 HOH A 60 660 203 HOH HOH . WA 6 HOH A 61 661 183 HOH HOH . WA 6 HOH A 62 662 193 HOH HOH . WA 6 HOH A 63 663 88 HOH HOH . WA 6 HOH A 64 664 22 HOH HOH . WA 6 HOH A 65 665 30 HOH HOH . WA 6 HOH A 66 666 43 HOH HOH . WA 6 HOH A 67 667 106 HOH HOH . WA 6 HOH A 68 668 72 HOH HOH . WA 6 HOH A 69 669 185 HOH HOH . WA 6 HOH A 70 670 177 HOH HOH . WA 6 HOH A 71 671 42 HOH HOH . WA 6 HOH A 72 672 27 HOH HOH . WA 6 HOH A 73 673 286 HOH HOH . WA 6 HOH A 74 674 46 HOH HOH . WA 6 HOH A 75 675 32 HOH HOH . WA 6 HOH A 76 676 144 HOH HOH . WA 6 HOH A 77 677 110 HOH HOH . WA 6 HOH A 78 678 186 HOH HOH . WA 6 HOH A 79 679 190 HOH HOH . WA 6 HOH A 80 680 6 HOH HOH . WA 6 HOH A 81 681 207 HOH HOH . WA 6 HOH A 82 682 28 HOH HOH . WA 6 HOH A 83 683 33 HOH HOH . WA 6 HOH A 84 684 282 HOH HOH . WA 6 HOH A 85 685 305 HOH HOH . WA 6 HOH A 86 686 265 HOH HOH . WA 6 HOH A 87 687 142 HOH HOH . WA 6 HOH A 88 688 124 HOH HOH . WA 6 HOH A 89 689 182 HOH HOH . WA 6 HOH A 90 690 100 HOH HOH . WA 6 HOH A 91 691 252 HOH HOH . WA 6 HOH A 92 692 175 HOH HOH . WA 6 HOH A 93 693 270 HOH HOH . WA 6 HOH A 94 694 169 HOH HOH . WA 6 HOH A 95 695 91 HOH HOH . WA 6 HOH A 96 696 168 HOH HOH . WA 6 HOH A 97 697 96 HOH HOH . WA 6 HOH A 98 698 275 HOH HOH . WA 6 HOH A 99 699 259 HOH HOH . WA 6 HOH A 100 700 121 HOH HOH . WA 6 HOH A 101 701 97 HOH HOH . WA 6 HOH A 102 702 316 HOH HOH . WA 6 HOH A 103 703 273 HOH HOH . WA 6 HOH A 104 704 77 HOH HOH . WA 6 HOH A 105 705 181 HOH HOH . WA 6 HOH A 106 706 38 HOH HOH . WA 6 HOH A 107 707 109 HOH HOH . WA 6 HOH A 108 708 293 HOH HOH . WA 6 HOH A 109 709 155 HOH HOH . WA 6 HOH A 110 710 164 HOH HOH . WA 6 HOH A 111 711 250 HOH HOH . WA 6 HOH A 112 712 327 HOH HOH . WA 6 HOH A 113 713 188 HOH HOH . WA 6 HOH A 114 714 128 HOH HOH . WA 6 HOH A 115 715 244 HOH HOH . WA 6 HOH A 116 716 41 HOH HOH . WA 6 HOH A 117 717 197 HOH HOH . WA 6 HOH A 118 718 138 HOH HOH . WA 6 HOH A 119 719 56 HOH HOH . WA 6 HOH A 120 720 163 HOH HOH . WA 6 HOH A 121 721 129 HOH HOH . WA 6 HOH A 122 722 141 HOH HOH . WA 6 HOH A 123 723 118 HOH HOH . WA 6 HOH A 124 724 330 HOH HOH . WA 6 HOH A 125 725 73 HOH HOH . WA 6 HOH A 126 726 26 HOH HOH . WA 6 HOH A 127 727 192 HOH HOH . WA 6 HOH A 128 728 221 HOH HOH . WA 6 HOH A 129 729 217 HOH HOH . WA 6 HOH A 130 730 174 HOH HOH . WA 6 HOH A 131 731 114 HOH HOH . WA 6 HOH A 132 732 119 HOH HOH . WA 6 HOH A 133 733 315 HOH HOH . WA 6 HOH A 134 734 255 HOH HOH . WA 6 HOH A 135 735 226 HOH HOH . WA 6 HOH A 136 736 140 HOH HOH . WA 6 HOH A 137 737 333 HOH HOH . WA 6 HOH A 138 738 276 HOH HOH . WA 6 HOH A 139 739 170 HOH HOH . WA 6 HOH A 140 740 241 HOH HOH . WA 6 HOH A 141 741 240 HOH HOH . WA 6 HOH A 142 742 283 HOH HOH . WA 6 HOH A 143 743 154 HOH HOH . WA 6 HOH A 144 744 279 HOH HOH . WA 6 HOH A 145 745 304 HOH HOH . WA 6 HOH A 146 746 329 HOH HOH . WA 6 HOH A 147 747 238 HOH HOH . WA 6 HOH A 148 748 296 HOH HOH . WA 6 HOH A 149 749 284 HOH HOH . WA 6 HOH A 150 750 165 HOH HOH . WA 6 HOH A 151 751 288 HOH HOH . XA 6 HOH B 1 601 285 HOH HOH . XA 6 HOH B 2 602 35 HOH HOH . XA 6 HOH B 3 603 233 HOH HOH . XA 6 HOH B 4 604 89 HOH HOH . XA 6 HOH B 5 605 103 HOH HOH . XA 6 HOH B 6 606 3 HOH HOH . XA 6 HOH B 7 607 160 HOH HOH . XA 6 HOH B 8 608 53 HOH HOH . XA 6 HOH B 9 609 23 HOH HOH . XA 6 HOH B 10 610 29 HOH HOH . XA 6 HOH B 11 611 137 HOH HOH . XA 6 HOH B 12 612 16 HOH HOH . XA 6 HOH B 13 613 204 HOH HOH . XA 6 HOH B 14 614 126 HOH HOH . XA 6 HOH B 15 615 52 HOH HOH . XA 6 HOH B 16 616 222 HOH HOH . XA 6 HOH B 17 617 65 HOH HOH . XA 6 HOH B 18 618 61 HOH HOH . XA 6 HOH B 19 619 21 HOH HOH . XA 6 HOH B 20 620 113 HOH HOH . XA 6 HOH B 21 621 158 HOH HOH . XA 6 HOH B 22 622 90 HOH HOH . XA 6 HOH B 23 623 81 HOH HOH . XA 6 HOH B 24 624 314 HOH HOH . XA 6 HOH B 25 625 317 HOH HOH . XA 6 HOH B 26 626 48 HOH HOH . XA 6 HOH B 27 627 5 HOH HOH . XA 6 HOH B 28 628 195 HOH HOH . XA 6 HOH B 29 629 130 HOH HOH . XA 6 HOH B 30 630 39 HOH HOH . XA 6 HOH B 31 631 31 HOH HOH . XA 6 HOH B 32 632 92 HOH HOH . XA 6 HOH B 33 633 60 HOH HOH . XA 6 HOH B 34 634 210 HOH HOH . XA 6 HOH B 35 635 214 HOH HOH . XA 6 HOH B 36 636 25 HOH HOH . XA 6 HOH B 37 637 328 HOH HOH . XA 6 HOH B 38 638 67 HOH HOH . XA 6 HOH B 39 639 245 HOH HOH . XA 6 HOH B 40 640 51 HOH HOH . XA 6 HOH B 41 641 87 HOH HOH . XA 6 HOH B 42 642 37 HOH HOH . XA 6 HOH B 43 643 211 HOH HOH . XA 6 HOH B 44 644 120 HOH HOH . XA 6 HOH B 45 645 145 HOH HOH . XA 6 HOH B 46 646 173 HOH HOH . XA 6 HOH B 47 647 156 HOH HOH . XA 6 HOH B 48 648 135 HOH HOH . XA 6 HOH B 49 649 322 HOH HOH . XA 6 HOH B 50 650 178 HOH HOH . XA 6 HOH B 51 651 8 HOH HOH . XA 6 HOH B 52 652 146 HOH HOH . XA 6 HOH B 53 653 281 HOH HOH . XA 6 HOH B 54 654 184 HOH HOH . XA 6 HOH B 55 655 306 HOH HOH . XA 6 HOH B 56 656 40 HOH HOH . XA 6 HOH B 57 657 331 HOH HOH . XA 6 HOH B 58 658 70 HOH HOH . XA 6 HOH B 59 659 224 HOH HOH . XA 6 HOH B 60 660 228 HOH HOH . XA 6 HOH B 61 661 223 HOH HOH . XA 6 HOH B 62 662 219 HOH HOH . XA 6 HOH B 63 663 143 HOH HOH . XA 6 HOH B 64 664 167 HOH HOH . XA 6 HOH B 65 665 127 HOH HOH . XA 6 HOH B 66 666 133 HOH HOH . XA 6 HOH B 67 667 229 HOH HOH . XA 6 HOH B 68 668 308 HOH HOH . XA 6 HOH B 69 669 256 HOH HOH . XA 6 HOH B 70 670 338 HOH HOH . XA 6 HOH B 71 671 166 HOH HOH . XA 6 HOH B 72 672 261 HOH HOH . XA 6 HOH B 73 673 318 HOH HOH . XA 6 HOH B 74 674 191 HOH HOH . XA 6 HOH B 75 675 312 HOH HOH . XA 6 HOH B 76 676 180 HOH HOH . XA 6 HOH B 77 677 313 HOH HOH . XA 6 HOH B 78 678 231 HOH HOH . XA 6 HOH B 79 679 220 HOH HOH . XA 6 HOH B 80 680 20 HOH HOH . XA 6 HOH B 81 681 153 HOH HOH . XA 6 HOH B 82 682 215 HOH HOH . XA 6 HOH B 83 683 307 HOH HOH . XA 6 HOH B 84 684 74 HOH HOH . XA 6 HOH B 85 685 225 HOH HOH . XA 6 HOH B 86 686 213 HOH HOH . XA 6 HOH B 87 687 232 HOH HOH . XA 6 HOH B 88 688 111 HOH HOH . XA 6 HOH B 89 689 260 HOH HOH . XA 6 HOH B 90 690 320 HOH HOH . XA 6 HOH B 91 691 334 HOH HOH . XA 6 HOH B 92 692 339 HOH HOH . XA 6 HOH B 93 693 248 HOH HOH . XA 6 HOH B 94 694 249 HOH HOH . XA 6 HOH B 95 695 237 HOH HOH . XA 6 HOH B 96 696 326 HOH HOH . XA 6 HOH B 97 697 332 HOH HOH . XA 6 HOH B 98 698 295 HOH HOH . XA 6 HOH B 99 699 294 HOH HOH . XA 6 HOH B 100 700 325 HOH HOH . XA 6 HOH B 101 701 271 HOH HOH . XA 6 HOH B 102 702 303 HOH HOH . XA 6 HOH B 103 703 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 3 38.616 158.467 37.099 1 49.95 ? C1 EDO 513 A 1 HETATM 2 O O1 EDO . . . O 3 38.007 158.066 35.863 1 44.73 ? O1 EDO 513 A 1 HETATM 3 C C2 EDO . . . O 3 37.674 159.393 37.865 1 41.67 ? C2 EDO 513 A 1 HETATM 4 O O2 EDO . . . O 3 37.839 160.734 37.394 1 44.45 ? O2 EDO 513 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #