data_7WW5 # _model_server_result.job_id TY0H31cdTBXjEGHp8gft0g _model_server_result.datetime_utc '2024-11-25 10:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ww5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7WW5 # _exptl.entry_id 7WW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WW5 _cell.length_a 37.87 _cell.length_b 55.89 _cell.length_c 59.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 37 A GLY 37 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 A OE2 GLU 53 A GLU 53 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc3 A OE2 GLU 57 A GLU 57 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc4 B O2B 8DG . A 8DG 201 1_555 C NA NA . A NA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc5 B O2B 8DG . A 8DG 201 1_555 C NA NA . A NA 202 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc6 B O1A 8DG . A 8DG 201 1_555 C NA NA . A NA 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc7 B O2G 8DG . A 8DG 201 1_555 D NA NA . A NA 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc8 B O2G 8DG . A 8DG 201 1_555 D NA NA . A NA 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc9 B O1B 8DG . A 8DG 201 1_555 D NA NA . A NA 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc10 B O1B 8DG . A 8DG 201 1_555 D NA NA . A NA 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc11 C NA NA . A NA 202 1_555 F O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc12 C NA NA . A NA 202 1_555 F O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc13 D NA NA . A NA 203 1_555 F O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc14 D NA NA . A NA 203 1_555 F O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc15 D NA NA . A NA 203 1_555 F O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WW5 _atom_sites.fract_transf_matrix[1][1] 0.026406 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016832 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8DG A 1 201 25 8DG 8GT . C 3 NA A 1 202 1 NA NA . D 3 NA A 1 203 2 NA NA . E 4 SO4 A 1 204 1 SO4 SO4 . F 5 HOH A 1 301 110 HOH HOH . F 5 HOH A 2 302 83 HOH HOH . F 5 HOH A 3 303 93 HOH HOH . F 5 HOH A 4 304 55 HOH HOH . F 5 HOH A 5 305 138 HOH HOH . F 5 HOH A 6 306 101 HOH HOH . F 5 HOH A 7 307 119 HOH HOH . F 5 HOH A 8 308 19 HOH HOH . F 5 HOH A 9 309 95 HOH HOH . F 5 HOH A 10 310 70 HOH HOH . F 5 HOH A 11 311 79 HOH HOH . F 5 HOH A 12 312 16 HOH HOH . F 5 HOH A 13 313 48 HOH HOH . F 5 HOH A 14 314 78 HOH HOH . F 5 HOH A 15 315 66 HOH HOH . F 5 HOH A 16 316 99 HOH HOH . F 5 HOH A 17 317 44 HOH HOH . F 5 HOH A 18 318 21 HOH HOH . F 5 HOH A 19 319 28 HOH HOH . F 5 HOH A 20 320 128 HOH HOH . F 5 HOH A 21 321 60 HOH HOH . F 5 HOH A 22 322 1 HOH HOH . F 5 HOH A 23 323 82 HOH HOH . F 5 HOH A 24 324 10 HOH HOH . F 5 HOH A 25 325 4 HOH HOH . F 5 HOH A 26 326 103 HOH HOH . F 5 HOH A 27 327 23 HOH HOH . F 5 HOH A 28 328 46 HOH HOH . F 5 HOH A 29 329 106 HOH HOH . F 5 HOH A 30 330 97 HOH HOH . F 5 HOH A 31 331 115 HOH HOH . F 5 HOH A 32 332 57 HOH HOH . F 5 HOH A 33 333 12 HOH HOH . F 5 HOH A 34 334 98 HOH HOH . F 5 HOH A 35 335 20 HOH HOH . F 5 HOH A 36 336 104 HOH HOH . F 5 HOH A 37 337 73 HOH HOH . F 5 HOH A 38 338 58 HOH HOH . F 5 HOH A 39 339 92 HOH HOH . F 5 HOH A 40 340 5 HOH HOH . F 5 HOH A 41 341 125 HOH HOH . F 5 HOH A 42 342 3 HOH HOH . F 5 HOH A 43 343 27 HOH HOH . F 5 HOH A 44 344 15 HOH HOH . F 5 HOH A 45 345 137 HOH HOH . F 5 HOH A 46 346 17 HOH HOH . F 5 HOH A 47 347 2 HOH HOH . F 5 HOH A 48 348 102 HOH HOH . F 5 HOH A 49 349 18 HOH HOH . F 5 HOH A 50 350 42 HOH HOH . F 5 HOH A 51 351 40 HOH HOH . F 5 HOH A 52 352 7 HOH HOH . F 5 HOH A 53 353 8 HOH HOH . F 5 HOH A 54 354 136 HOH HOH . F 5 HOH A 55 355 61 HOH HOH . F 5 HOH A 56 356 75 HOH HOH . F 5 HOH A 57 357 14 HOH HOH . F 5 HOH A 58 358 11 HOH HOH . F 5 HOH A 59 359 80 HOH HOH . F 5 HOH A 60 360 22 HOH HOH . F 5 HOH A 61 361 13 HOH HOH . F 5 HOH A 62 362 118 HOH HOH . F 5 HOH A 63 363 39 HOH HOH . F 5 HOH A 64 364 9 HOH HOH . F 5 HOH A 65 365 113 HOH HOH . F 5 HOH A 66 366 31 HOH HOH . F 5 HOH A 67 367 64 HOH HOH . F 5 HOH A 68 368 87 HOH HOH . F 5 HOH A 69 369 109 HOH HOH . F 5 HOH A 70 370 6 HOH HOH . F 5 HOH A 71 371 26 HOH HOH . F 5 HOH A 72 372 111 HOH HOH . F 5 HOH A 73 373 43 HOH HOH . F 5 HOH A 74 374 51 HOH HOH . F 5 HOH A 75 375 62 HOH HOH . F 5 HOH A 76 376 89 HOH HOH . F 5 HOH A 77 377 114 HOH HOH . F 5 HOH A 78 378 132 HOH HOH . F 5 HOH A 79 379 33 HOH HOH . F 5 HOH A 80 380 32 HOH HOH . F 5 HOH A 81 381 30 HOH HOH . F 5 HOH A 82 382 29 HOH HOH . F 5 HOH A 83 383 129 HOH HOH . F 5 HOH A 84 384 38 HOH HOH . F 5 HOH A 85 385 74 HOH HOH . F 5 HOH A 86 386 69 HOH HOH . F 5 HOH A 87 387 25 HOH HOH . F 5 HOH A 88 388 41 HOH HOH . F 5 HOH A 89 389 130 HOH HOH . F 5 HOH A 90 390 63 HOH HOH . F 5 HOH A 91 391 45 HOH HOH . F 5 HOH A 92 392 49 HOH HOH . F 5 HOH A 93 393 47 HOH HOH . F 5 HOH A 94 394 139 HOH HOH . F 5 HOH A 95 395 36 HOH HOH . F 5 HOH A 96 396 91 HOH HOH . F 5 HOH A 97 397 52 HOH HOH . F 5 HOH A 98 398 24 HOH HOH . F 5 HOH A 99 399 37 HOH HOH . F 5 HOH A 100 400 131 HOH HOH . F 5 HOH A 101 401 96 HOH HOH . F 5 HOH A 102 402 54 HOH HOH . F 5 HOH A 103 403 35 HOH HOH . F 5 HOH A 104 404 121 HOH HOH . F 5 HOH A 105 405 68 HOH HOH . F 5 HOH A 106 406 81 HOH HOH . F 5 HOH A 107 407 123 HOH HOH . F 5 HOH A 108 408 90 HOH HOH . F 5 HOH A 109 409 59 HOH HOH . F 5 HOH A 110 410 134 HOH HOH . F 5 HOH A 111 411 108 HOH HOH . F 5 HOH A 112 412 53 HOH HOH . F 5 HOH A 113 413 77 HOH HOH . F 5 HOH A 114 414 135 HOH HOH . F 5 HOH A 115 415 112 HOH HOH . F 5 HOH A 116 416 126 HOH HOH . F 5 HOH A 117 417 94 HOH HOH . F 5 HOH A 118 418 127 HOH HOH . F 5 HOH A 119 419 84 HOH HOH . F 5 HOH A 120 420 124 HOH HOH . F 5 HOH A 121 421 86 HOH HOH . F 5 HOH A 122 422 105 HOH HOH . F 5 HOH A 123 423 88 HOH HOH . F 5 HOH A 124 424 72 HOH HOH . F 5 HOH A 125 425 100 HOH HOH . F 5 HOH A 126 426 116 HOH HOH . F 5 HOH A 127 427 34 HOH HOH . F 5 HOH A 128 428 50 HOH HOH . F 5 HOH A 129 429 56 HOH HOH . F 5 HOH A 130 430 65 HOH HOH . F 5 HOH A 131 431 76 HOH HOH . F 5 HOH A 132 432 71 HOH HOH . F 5 HOH A 133 433 67 HOH HOH . F 5 HOH A 134 434 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -7.592 _atom_site.Cartn_y 3.344 _atom_site.Cartn_z 21.387 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #