data_7WW6 # _model_server_result.job_id 2G11-YGqDKaEANhTjkmhpA _model_server_result.datetime_utc '2024-10-11 15:19:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ww6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 7WW6 # _exptl.entry_id 7WW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WW6 _cell.length_a 38.04 _cell.length_b 55.9 _cell.length_c 59.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 C 1 GLC Y 1 SUC 2 n B FRU 2 C 2 FRU Y 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . C GLC 1 1_555 B O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? metalc ? metalc1 A O GLY 37 A GLY 37 1_555 D MN MN . A MN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.179 ? metalc ? metalc2 A O GLY 37 A GLY 37 1_555 E NA NA . A NA 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.214 ? metalc ? metalc3 A OE2 GLU 53 A GLU 53 1_555 F NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc4 A OE2 GLU 57 A GLU 57 1_555 D MN MN . A MN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 A OE2 GLU 57 A GLU 57 1_555 E NA NA . A NA 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.225 ? metalc ? metalc6 C O2B 8DG . A 8DG 201 1_555 D MN MN . A MN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 C O1A 8DG . A 8DG 201 1_555 D MN MN . A MN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 C O2B 8DG . A 8DG 201 1_555 E NA NA . A NA 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.223 ? metalc ? metalc9 C O1A 8DG . A 8DG 201 1_555 E NA NA . A NA 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.227 ? metalc ? metalc10 C O2G 8DG . A 8DG 201 1_555 F NA NA . A NA 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc11 C O1B 8DG . A 8DG 201 1_555 F NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 D MN MN . A MN 202 1_555 H O HOH . A HOH 342 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc13 D MN MN . A MN 202 1_555 H O HOH . A HOH 413 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc14 E NA NA . A NA 203 1_555 H O HOH . A HOH 342 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc15 E NA NA . A NA 203 1_555 H O HOH . A HOH 413 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc16 F NA NA . A NA 204 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc17 F NA NA . A NA 204 1_555 H O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc18 F NA NA . A NA 204 1_555 H O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WW6 _atom_sites.fract_transf_matrix[1][1] 0.026288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8DG A 1 201 25 8DG 8GT . D 4 MN A 1 202 1 MN MN . E 5 NA A 1 203 2 NA NA . F 5 NA A 1 204 3 NA NA . G 6 SO4 A 1 205 1 SO4 SO4 . H 7 HOH A 1 301 100 HOH HOH . H 7 HOH A 2 302 113 HOH HOH . H 7 HOH A 3 303 79 HOH HOH . H 7 HOH A 4 304 94 HOH HOH . H 7 HOH A 5 305 101 HOH HOH . H 7 HOH A 6 306 110 HOH HOH . H 7 HOH A 7 307 21 HOH HOH . H 7 HOH A 8 308 75 HOH HOH . H 7 HOH A 9 309 129 HOH HOH . H 7 HOH A 10 310 20 HOH HOH . H 7 HOH A 11 311 30 HOH HOH . H 7 HOH A 12 312 123 HOH HOH . H 7 HOH A 13 313 16 HOH HOH . H 7 HOH A 14 314 14 HOH HOH . H 7 HOH A 15 315 46 HOH HOH . H 7 HOH A 16 316 4 HOH HOH . H 7 HOH A 17 317 33 HOH HOH . H 7 HOH A 18 318 45 HOH HOH . H 7 HOH A 19 319 91 HOH HOH . H 7 HOH A 20 320 56 HOH HOH . H 7 HOH A 21 321 51 HOH HOH . H 7 HOH A 22 322 65 HOH HOH . H 7 HOH A 23 323 12 HOH HOH . H 7 HOH A 24 324 11 HOH HOH . H 7 HOH A 25 325 61 HOH HOH . H 7 HOH A 26 326 63 HOH HOH . H 7 HOH A 27 327 122 HOH HOH . H 7 HOH A 28 328 22 HOH HOH . H 7 HOH A 29 329 53 HOH HOH . H 7 HOH A 30 330 31 HOH HOH . H 7 HOH A 31 331 15 HOH HOH . H 7 HOH A 32 332 152 HOH HOH . H 7 HOH A 33 333 34 HOH HOH . H 7 HOH A 34 334 32 HOH HOH . H 7 HOH A 35 335 108 HOH HOH . H 7 HOH A 36 336 64 HOH HOH . H 7 HOH A 37 337 54 HOH HOH . H 7 HOH A 38 338 19 HOH HOH . H 7 HOH A 39 339 98 HOH HOH . H 7 HOH A 40 340 2 HOH HOH . H 7 HOH A 41 341 6 HOH HOH . H 7 HOH A 42 342 3 HOH HOH . H 7 HOH A 43 343 27 HOH HOH . H 7 HOH A 44 344 60 HOH HOH . H 7 HOH A 45 345 87 HOH HOH . H 7 HOH A 46 346 107 HOH HOH . H 7 HOH A 47 347 23 HOH HOH . H 7 HOH A 48 348 96 HOH HOH . H 7 HOH A 49 349 105 HOH HOH . H 7 HOH A 50 350 9 HOH HOH . H 7 HOH A 51 351 5 HOH HOH . H 7 HOH A 52 352 39 HOH HOH . H 7 HOH A 53 353 29 HOH HOH . H 7 HOH A 54 354 50 HOH HOH . H 7 HOH A 55 355 86 HOH HOH . H 7 HOH A 56 356 72 HOH HOH . H 7 HOH A 57 357 8 HOH HOH . H 7 HOH A 58 358 10 HOH HOH . H 7 HOH A 59 359 24 HOH HOH . H 7 HOH A 60 360 134 HOH HOH . H 7 HOH A 61 361 103 HOH HOH . H 7 HOH A 62 362 7 HOH HOH . H 7 HOH A 63 363 80 HOH HOH . H 7 HOH A 64 364 42 HOH HOH . H 7 HOH A 65 365 102 HOH HOH . H 7 HOH A 66 366 78 HOH HOH . H 7 HOH A 67 367 58 HOH HOH . H 7 HOH A 68 368 47 HOH HOH . H 7 HOH A 69 369 57 HOH HOH . H 7 HOH A 70 370 17 HOH HOH . H 7 HOH A 71 371 55 HOH HOH . H 7 HOH A 72 372 49 HOH HOH . H 7 HOH A 73 373 83 HOH HOH . H 7 HOH A 74 374 124 HOH HOH . H 7 HOH A 75 375 116 HOH HOH . H 7 HOH A 76 376 71 HOH HOH . H 7 HOH A 77 377 13 HOH HOH . H 7 HOH A 78 378 99 HOH HOH . H 7 HOH A 79 379 35 HOH HOH . H 7 HOH A 80 380 81 HOH HOH . H 7 HOH A 81 381 77 HOH HOH . H 7 HOH A 82 382 118 HOH HOH . H 7 HOH A 83 383 117 HOH HOH . H 7 HOH A 84 384 41 HOH HOH . H 7 HOH A 85 385 62 HOH HOH . H 7 HOH A 86 386 136 HOH HOH . H 7 HOH A 87 387 115 HOH HOH . H 7 HOH A 88 388 121 HOH HOH . H 7 HOH A 89 389 68 HOH HOH . H 7 HOH A 90 390 25 HOH HOH . H 7 HOH A 91 391 130 HOH HOH . H 7 HOH A 92 392 59 HOH HOH . H 7 HOH A 93 393 38 HOH HOH . H 7 HOH A 94 394 76 HOH HOH . H 7 HOH A 95 395 127 HOH HOH . H 7 HOH A 96 396 120 HOH HOH . H 7 HOH A 97 397 28 HOH HOH . H 7 HOH A 98 398 37 HOH HOH . H 7 HOH A 99 399 40 HOH HOH . H 7 HOH A 100 400 154 HOH HOH . H 7 HOH A 101 401 133 HOH HOH . H 7 HOH A 102 402 26 HOH HOH . H 7 HOH A 103 403 44 HOH HOH . H 7 HOH A 104 404 82 HOH HOH . H 7 HOH A 105 405 126 HOH HOH . H 7 HOH A 106 406 132 HOH HOH . H 7 HOH A 107 407 90 HOH HOH . H 7 HOH A 108 408 141 HOH HOH . H 7 HOH A 109 409 143 HOH HOH . H 7 HOH A 110 410 74 HOH HOH . H 7 HOH A 111 411 150 HOH HOH . H 7 HOH A 112 412 97 HOH HOH . H 7 HOH A 113 413 18 HOH HOH . H 7 HOH A 114 414 89 HOH HOH . H 7 HOH A 115 415 52 HOH HOH . H 7 HOH A 116 416 36 HOH HOH . H 7 HOH A 117 417 109 HOH HOH . H 7 HOH A 118 418 106 HOH HOH . H 7 HOH A 119 419 153 HOH HOH . H 7 HOH A 120 420 156 HOH HOH . H 7 HOH A 121 421 131 HOH HOH . H 7 HOH A 122 422 85 HOH HOH . H 7 HOH A 123 423 69 HOH HOH . H 7 HOH A 124 424 84 HOH HOH . H 7 HOH A 125 425 88 HOH HOH . H 7 HOH A 126 426 114 HOH HOH . H 7 HOH A 127 427 112 HOH HOH . H 7 HOH A 128 428 147 HOH HOH . H 7 HOH A 129 429 48 HOH HOH . H 7 HOH A 130 430 104 HOH HOH . H 7 HOH A 131 431 111 HOH HOH . H 7 HOH A 132 432 151 HOH HOH . H 7 HOH A 133 433 95 HOH HOH . H 7 HOH A 134 434 73 HOH HOH . H 7 HOH A 135 435 93 HOH HOH . H 7 HOH A 136 436 92 HOH HOH . H 7 HOH A 137 437 139 HOH HOH . H 7 HOH A 138 438 144 HOH HOH . H 7 HOH A 139 439 67 HOH HOH . H 7 HOH A 140 440 43 HOH HOH . H 7 HOH A 141 441 146 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id B _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -7.475 _atom_site.Cartn_y 3.361 _atom_site.Cartn_z 21.211 _atom_site.occupancy 0.4 _atom_site.B_iso_or_equiv 29.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #