data_7WW7 # _model_server_result.job_id 3UDbm-OdZkyT2qZcn81ylg _model_server_result.datetime_utc '2024-11-23 16:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ww7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 7WW7 # _exptl.entry_id 7WW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WW7 _cell.length_a 38.278 _cell.length_b 55.968 _cell.length_c 59.181 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 C 1 GLC Y 1 SUC 2 n B FRU 2 C 2 FRU Y 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . C GLC 1 1_555 B O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? metalc ? metalc1 A O GLY 37 A GLY 37 1_555 D MN MN . A MN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.173 ? metalc ? metalc2 A OE2 GLU 53 A GLU 53 1_555 E MN MN . A MN 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.456 ? metalc ? metalc3 A OE2 GLU 53 A GLU 53 1_555 F NA NA . A NA 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.439 ? metalc ? metalc4 A OE1 GLU 53 A GLU 53 1_555 G MN MN . A MN 205 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.511 ? metalc ? metalc5 A OE2 GLU 57 A GLU 57 1_555 D MN MN . A MN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.169 ? metalc ? metalc6 A OE2 GLU 57 A GLU 57 1_555 G MN MN . A MN 205 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.139 ? metalc ? metalc7 C O2B 8DG . A 8DG 201 1_555 D MN MN . A MN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 C O1A 8DG . A 8DG 201 1_555 D MN MN . A MN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.169 ? metalc ? metalc9 C O1B 8DG . A 8DG 201 1_555 E MN MN . A MN 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.226 ? metalc ? metalc10 C O1B 8DG . A 8DG 201 1_555 F NA NA . A NA 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.309 ? metalc ? metalc11 C O2B 8DG . A 8DG 201 1_555 G MN MN . A MN 205 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.322 ? metalc ? metalc12 D MN MN . A MN 202 1_555 I O HOH . A HOH 331 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc13 D MN MN . A MN 202 1_555 I O HOH . A HOH 410 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc14 E MN MN . A MN 203 1_555 I O HOH . A HOH 308 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc15 E MN MN . A MN 203 1_555 I O HOH . A HOH 316 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc16 E MN MN . A MN 203 1_555 I O HOH . A HOH 334 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc17 F NA NA . A NA 204 1_555 I O HOH . A HOH 306 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.751 ? metalc ? metalc18 F NA NA . A NA 204 1_555 I O HOH . A HOH 308 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc19 F NA NA . A NA 204 1_555 I O HOH . A HOH 316 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc20 F NA NA . A NA 204 1_555 I O HOH . A HOH 334 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc21 G MN MN . A MN 205 1_555 I O HOH . A HOH 310 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc22 G MN MN . A MN 205 1_555 I O HOH . A HOH 341 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WW7 _atom_sites.fract_transf_matrix[1][1] 0.026125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016897 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8DG A 1 201 25 8DG 8GT . D 4 MN A 1 202 1 MN MN . E 4 MN A 1 203 2 MN MN . F 5 NA A 1 204 3 NA NA . G 4 MN A 1 205 4 MN MN . H 6 SO4 A 1 206 1 SO4 SO4 . I 7 HOH A 1 301 119 HOH HOH . I 7 HOH A 2 302 108 HOH HOH . I 7 HOH A 3 303 65 HOH HOH . I 7 HOH A 4 304 66 HOH HOH . I 7 HOH A 5 305 133 HOH HOH . I 7 HOH A 6 306 1 HOH HOH . I 7 HOH A 7 307 88 HOH HOH . I 7 HOH A 8 308 14 HOH HOH . I 7 HOH A 9 309 96 HOH HOH . I 7 HOH A 10 310 44 HOH HOH . I 7 HOH A 11 311 22 HOH HOH . I 7 HOH A 12 312 144 HOH HOH . I 7 HOH A 13 313 25 HOH HOH . I 7 HOH A 14 314 30 HOH HOH . I 7 HOH A 15 315 10 HOH HOH . I 7 HOH A 16 316 71 HOH HOH . I 7 HOH A 17 317 43 HOH HOH . I 7 HOH A 18 318 28 HOH HOH . I 7 HOH A 19 319 68 HOH HOH . I 7 HOH A 20 320 49 HOH HOH . I 7 HOH A 21 321 11 HOH HOH . I 7 HOH A 22 322 134 HOH HOH . I 7 HOH A 23 323 126 HOH HOH . I 7 HOH A 24 324 36 HOH HOH . I 7 HOH A 25 325 131 HOH HOH . I 7 HOH A 26 326 42 HOH HOH . I 7 HOH A 27 327 6 HOH HOH . I 7 HOH A 28 328 139 HOH HOH . I 7 HOH A 29 329 111 HOH HOH . I 7 HOH A 30 330 18 HOH HOH . I 7 HOH A 31 331 3 HOH HOH . I 7 HOH A 32 332 154 HOH HOH . I 7 HOH A 33 333 57 HOH HOH . I 7 HOH A 34 334 23 HOH HOH . I 7 HOH A 35 335 125 HOH HOH . I 7 HOH A 36 336 8 HOH HOH . I 7 HOH A 37 337 16 HOH HOH . I 7 HOH A 38 338 113 HOH HOH . I 7 HOH A 39 339 7 HOH HOH . I 7 HOH A 40 340 17 HOH HOH . I 7 HOH A 41 341 15 HOH HOH . I 7 HOH A 42 342 75 HOH HOH . I 7 HOH A 43 343 19 HOH HOH . I 7 HOH A 44 344 73 HOH HOH . I 7 HOH A 45 345 69 HOH HOH . I 7 HOH A 46 346 85 HOH HOH . I 7 HOH A 47 347 4 HOH HOH . I 7 HOH A 48 348 101 HOH HOH . I 7 HOH A 49 349 56 HOH HOH . I 7 HOH A 50 350 41 HOH HOH . I 7 HOH A 51 351 78 HOH HOH . I 7 HOH A 52 352 46 HOH HOH . I 7 HOH A 53 353 32 HOH HOH . I 7 HOH A 54 354 33 HOH HOH . I 7 HOH A 55 355 20 HOH HOH . I 7 HOH A 56 356 74 HOH HOH . I 7 HOH A 57 357 9 HOH HOH . I 7 HOH A 58 358 51 HOH HOH . I 7 HOH A 59 359 137 HOH HOH . I 7 HOH A 60 360 48 HOH HOH . I 7 HOH A 61 361 29 HOH HOH . I 7 HOH A 62 362 156 HOH HOH . I 7 HOH A 63 363 97 HOH HOH . I 7 HOH A 64 364 77 HOH HOH . I 7 HOH A 65 365 98 HOH HOH . I 7 HOH A 66 366 21 HOH HOH . I 7 HOH A 67 367 94 HOH HOH . I 7 HOH A 68 368 12 HOH HOH . I 7 HOH A 69 369 58 HOH HOH . I 7 HOH A 70 370 55 HOH HOH . I 7 HOH A 71 371 62 HOH HOH . I 7 HOH A 72 372 37 HOH HOH . I 7 HOH A 73 373 81 HOH HOH . I 7 HOH A 74 374 82 HOH HOH . I 7 HOH A 75 375 107 HOH HOH . I 7 HOH A 76 376 91 HOH HOH . I 7 HOH A 77 377 24 HOH HOH . I 7 HOH A 78 378 13 HOH HOH . I 7 HOH A 79 379 86 HOH HOH . I 7 HOH A 80 380 63 HOH HOH . I 7 HOH A 81 381 93 HOH HOH . I 7 HOH A 82 382 50 HOH HOH . I 7 HOH A 83 383 64 HOH HOH . I 7 HOH A 84 384 138 HOH HOH . I 7 HOH A 85 385 61 HOH HOH . I 7 HOH A 86 386 124 HOH HOH . I 7 HOH A 87 387 110 HOH HOH . I 7 HOH A 88 388 40 HOH HOH . I 7 HOH A 89 389 155 HOH HOH . I 7 HOH A 90 390 59 HOH HOH . I 7 HOH A 91 391 39 HOH HOH . I 7 HOH A 92 392 141 HOH HOH . I 7 HOH A 93 393 105 HOH HOH . I 7 HOH A 94 394 27 HOH HOH . I 7 HOH A 95 395 99 HOH HOH . I 7 HOH A 96 396 70 HOH HOH . I 7 HOH A 97 397 89 HOH HOH . I 7 HOH A 98 398 26 HOH HOH . I 7 HOH A 99 399 47 HOH HOH . I 7 HOH A 100 400 35 HOH HOH . I 7 HOH A 101 401 145 HOH HOH . I 7 HOH A 102 402 45 HOH HOH . I 7 HOH A 103 403 87 HOH HOH . I 7 HOH A 104 404 103 HOH HOH . I 7 HOH A 105 405 67 HOH HOH . I 7 HOH A 106 406 102 HOH HOH . I 7 HOH A 107 407 38 HOH HOH . I 7 HOH A 108 408 117 HOH HOH . I 7 HOH A 109 409 140 HOH HOH . I 7 HOH A 110 410 5 HOH HOH . I 7 HOH A 111 411 112 HOH HOH . I 7 HOH A 112 412 115 HOH HOH . I 7 HOH A 113 413 128 HOH HOH . I 7 HOH A 114 414 31 HOH HOH . I 7 HOH A 115 415 122 HOH HOH . I 7 HOH A 116 416 52 HOH HOH . I 7 HOH A 117 417 116 HOH HOH . I 7 HOH A 118 418 83 HOH HOH . I 7 HOH A 119 419 142 HOH HOH . I 7 HOH A 120 420 84 HOH HOH . I 7 HOH A 121 421 109 HOH HOH . I 7 HOH A 122 422 152 HOH HOH . I 7 HOH A 123 423 76 HOH HOH . I 7 HOH A 124 424 80 HOH HOH . I 7 HOH A 125 425 136 HOH HOH . I 7 HOH A 126 426 106 HOH HOH . I 7 HOH A 127 427 135 HOH HOH . I 7 HOH A 128 428 150 HOH HOH . I 7 HOH A 129 429 95 HOH HOH . I 7 HOH A 130 430 53 HOH HOH . I 7 HOH A 131 431 104 HOH HOH . I 7 HOH A 132 432 153 HOH HOH . I 7 HOH A 133 433 132 HOH HOH . I 7 HOH A 134 434 121 HOH HOH . I 7 HOH A 135 435 60 HOH HOH . I 7 HOH A 136 436 148 HOH HOH . I 7 HOH A 137 437 90 HOH HOH . I 7 HOH A 138 438 100 HOH HOH . I 7 HOH A 139 439 92 HOH HOH . I 7 HOH A 140 440 79 HOH HOH . I 7 HOH A 141 441 120 HOH HOH . I 7 HOH A 142 442 34 HOH HOH . I 7 HOH A 143 443 146 HOH HOH . I 7 HOH A 144 444 130 HOH HOH . I 7 HOH A 145 445 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id B _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -10.487 _atom_site.Cartn_y 0.503 _atom_site.Cartn_z 17.185 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 11.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #