data_7WW9 # _model_server_result.job_id cxzwH13nmlangwP04dfiLw _model_server_result.datetime_utc '2024-10-11 15:15:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ww9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 7WW9 # _exptl.entry_id 7WW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WW9 _cell.length_a 37.962 _cell.length_b 55.906 _cell.length_c 59.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 37 A GLY 37 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 A OE2 GLU 53 A GLU 53 1_555 F MN MN . A MN 205 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.652 ? metalc ? metalc3 A OE1 GLU 53 A GLU 53 1_555 G MN MN . A MN 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.553 ? metalc ? metalc4 A OE1 GLU 53 A GLU 53 1_555 H NA NA . A NA 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.44 ? metalc ? metalc5 A OE2 GLU 57 A GLU 57 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc6 A OE2 GLU 57 A GLU 57 1_555 G MN MN . A MN 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.422 ? metalc ? metalc7 A OE2 GLU 57 A GLU 57 1_555 H NA NA . A NA 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.521 ? metalc ? metalc8 B O2B 8DG . A 8DG 201 1_555 E MN MN . A MN 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc9 B O1A 8DG . A 8DG 201 1_555 E MN MN . A MN 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc10 B O2G 8DG . A 8DG 201 1_555 F MN MN . A MN 205 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.401 ? metalc ? metalc11 B O1B 8DG . A 8DG 201 1_555 F MN MN . A MN 205 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.217 ? metalc ? metalc12 B O2B 8DG . A 8DG 201 1_555 G MN MN . A MN 206 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.447 ? metalc ? metalc13 C OP2 8OG . A 8OG 202 1_555 E MN MN . A MN 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc14 E MN MN . A MN 204 1_555 I O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc15 E MN MN . A MN 204 1_555 I O HOH . A HOH 398 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.105 ? metalc ? metalc16 E MN MN . A MN 204 1_555 I O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc17 F MN MN . A MN 205 1_555 I O HOH . A HOH 326 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc18 F MN MN . A MN 205 1_555 I O HOH . A HOH 374 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc19 G MN MN . A MN 206 1_555 I O HOH . A HOH 308 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc20 G MN MN . A MN 206 1_555 I O HOH . A HOH 359 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc21 H NA NA . A NA 207 1_555 I O HOH . A HOH 308 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc22 H NA NA . A NA 207 1_555 I O HOH . A HOH 359 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WW9 _atom_sites.fract_transf_matrix[1][1] 0.026342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8DG A 1 201 25 8DG 8GT . C 3 8OG A 1 202 26 8OG 8OG . D 4 SO4 A 1 203 1 SO4 SO4 . E 5 MN A 1 204 1 MN MN . F 5 MN A 1 205 2 MN MN . G 5 MN A 1 206 4 MN MN . H 6 NA A 1 207 5 NA NA . I 7 HOH A 1 301 49 HOH HOH . I 7 HOH A 2 302 58 HOH HOH . I 7 HOH A 3 303 38 HOH HOH . I 7 HOH A 4 304 90 HOH HOH . I 7 HOH A 5 305 26 HOH HOH . I 7 HOH A 6 306 50 HOH HOH . I 7 HOH A 7 307 75 HOH HOH . I 7 HOH A 8 308 5 HOH HOH . I 7 HOH A 9 309 63 HOH HOH . I 7 HOH A 10 310 83 HOH HOH . I 7 HOH A 11 311 33 HOH HOH . I 7 HOH A 12 312 76 HOH HOH . I 7 HOH A 13 313 87 HOH HOH . I 7 HOH A 14 314 172 HOH HOH . I 7 HOH A 15 315 84 HOH HOH . I 7 HOH A 16 316 81 HOH HOH . I 7 HOH A 17 317 61 HOH HOH . I 7 HOH A 18 318 15 HOH HOH . I 7 HOH A 19 319 93 HOH HOH . I 7 HOH A 20 320 55 HOH HOH . I 7 HOH A 21 321 30 HOH HOH . I 7 HOH A 22 322 21 HOH HOH . I 7 HOH A 23 323 32 HOH HOH . I 7 HOH A 24 324 10 HOH HOH . I 7 HOH A 25 325 45 HOH HOH . I 7 HOH A 26 326 7 HOH HOH . I 7 HOH A 27 327 13 HOH HOH . I 7 HOH A 28 328 11 HOH HOH . I 7 HOH A 29 329 71 HOH HOH . I 7 HOH A 30 330 67 HOH HOH . I 7 HOH A 31 331 173 HOH HOH . I 7 HOH A 32 332 16 HOH HOH . I 7 HOH A 33 333 178 HOH HOH . I 7 HOH A 34 334 57 HOH HOH . I 7 HOH A 35 335 40 HOH HOH . I 7 HOH A 36 336 161 HOH HOH . I 7 HOH A 37 337 60 HOH HOH . I 7 HOH A 38 338 18 HOH HOH . I 7 HOH A 39 339 179 HOH HOH . I 7 HOH A 40 340 42 HOH HOH . I 7 HOH A 41 341 1 HOH HOH . I 7 HOH A 42 342 82 HOH HOH . I 7 HOH A 43 343 47 HOH HOH . I 7 HOH A 44 344 22 HOH HOH . I 7 HOH A 45 345 78 HOH HOH . I 7 HOH A 46 346 134 HOH HOH . I 7 HOH A 47 347 92 HOH HOH . I 7 HOH A 48 348 34 HOH HOH . I 7 HOH A 49 349 56 HOH HOH . I 7 HOH A 50 350 3 HOH HOH . I 7 HOH A 51 351 177 HOH HOH . I 7 HOH A 52 352 175 HOH HOH . I 7 HOH A 53 353 28 HOH HOH . I 7 HOH A 54 354 85 HOH HOH . I 7 HOH A 55 355 51 HOH HOH . I 7 HOH A 56 356 171 HOH HOH . I 7 HOH A 57 357 23 HOH HOH . I 7 HOH A 58 358 37 HOH HOH . I 7 HOH A 59 359 3 HOH HOH . I 7 HOH A 60 360 17 HOH HOH . I 7 HOH A 61 361 20 HOH HOH . I 7 HOH A 62 362 127 HOH HOH . I 7 HOH A 63 363 80 HOH HOH . I 7 HOH A 64 364 95 HOH HOH . I 7 HOH A 65 365 88 HOH HOH . I 7 HOH A 66 366 65 HOH HOH . I 7 HOH A 67 367 59 HOH HOH . I 7 HOH A 68 368 52 HOH HOH . I 7 HOH A 69 369 44 HOH HOH . I 7 HOH A 70 370 124 HOH HOH . I 7 HOH A 71 371 96 HOH HOH . I 7 HOH A 72 372 94 HOH HOH . I 7 HOH A 73 373 46 HOH HOH . I 7 HOH A 74 374 6 HOH HOH . I 7 HOH A 75 375 39 HOH HOH . I 7 HOH A 76 376 29 HOH HOH . I 7 HOH A 77 377 111 HOH HOH . I 7 HOH A 78 378 14 HOH HOH . I 7 HOH A 79 379 176 HOH HOH . I 7 HOH A 80 380 35 HOH HOH . I 7 HOH A 81 381 28 HOH HOH . I 7 HOH A 82 382 68 HOH HOH . I 7 HOH A 83 383 36 HOH HOH . I 7 HOH A 84 384 64 HOH HOH . I 7 HOH A 85 385 70 HOH HOH . I 7 HOH A 86 386 74 HOH HOH . I 7 HOH A 87 387 27 HOH HOH . I 7 HOH A 88 388 72 HOH HOH . I 7 HOH A 89 389 62 HOH HOH . I 7 HOH A 90 390 19 HOH HOH . I 7 HOH A 91 391 99 HOH HOH . I 7 HOH A 92 392 24 HOH HOH . I 7 HOH A 93 393 123 HOH HOH . I 7 HOH A 94 394 164 HOH HOH . I 7 HOH A 95 395 126 HOH HOH . I 7 HOH A 96 396 66 HOH HOH . I 7 HOH A 97 397 41 HOH HOH . I 7 HOH A 98 398 27 HOH HOH . I 7 HOH A 99 399 174 HOH HOH . I 7 HOH A 100 400 98 HOH HOH . I 7 HOH A 101 401 181 HOH HOH . I 7 HOH A 102 402 97 HOH HOH . I 7 HOH A 103 403 25 HOH HOH . I 7 HOH A 104 404 48 HOH HOH . I 7 HOH A 105 405 2 HOH HOH . I 7 HOH A 106 406 116 HOH HOH . I 7 HOH A 107 407 107 HOH HOH . I 7 HOH A 108 408 144 HOH HOH . I 7 HOH A 109 409 43 HOH HOH . I 7 HOH A 110 410 125 HOH HOH . I 7 HOH A 111 411 73 HOH HOH . I 7 HOH A 112 412 130 HOH HOH . I 7 HOH A 113 413 79 HOH HOH . I 7 HOH A 114 414 110 HOH HOH . I 7 HOH A 115 415 150 HOH HOH . I 7 HOH A 116 416 105 HOH HOH . I 7 HOH A 117 417 142 HOH HOH . I 7 HOH A 118 418 104 HOH HOH . I 7 HOH A 119 419 101 HOH HOH . I 7 HOH A 120 420 137 HOH HOH . I 7 HOH A 121 421 183 HOH HOH . I 7 HOH A 122 422 118 HOH HOH . I 7 HOH A 123 423 163 HOH HOH . I 7 HOH A 124 424 109 HOH HOH . I 7 HOH A 125 425 115 HOH HOH . I 7 HOH A 126 426 112 HOH HOH . I 7 HOH A 127 427 106 HOH HOH . I 7 HOH A 128 428 114 HOH HOH . I 7 HOH A 129 429 120 HOH HOH . I 7 HOH A 130 430 162 HOH HOH . I 7 HOH A 131 431 102 HOH HOH . I 7 HOH A 132 432 136 HOH HOH . I 7 HOH A 133 433 119 HOH HOH . I 7 HOH A 134 434 103 HOH HOH . I 7 HOH A 135 435 145 HOH HOH . I 7 HOH A 136 436 147 HOH HOH . I 7 HOH A 137 437 29 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id B _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x -8.831 _atom_site.Cartn_y 3.272 _atom_site.Cartn_z 18.123 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 22.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 207 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #