data_7WX6 # _model_server_result.job_id rstLdmGKRVLX1pIz-6_VDA _model_server_result.datetime_utc '2024-12-01 10:45:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7WX6 # _exptl.entry_id 7WX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WX6 _cell.length_a 72.047 _cell.length_b 84.525 _cell.length_c 105.547 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 102 n y N1A C6A COA doub 103 n y C2A N3A COA doub 104 n y C2A H2A COA sing 105 n n N3A C4A COA sing 106 n y C4A C5A COA doub 107 n y C4A N9A COA sing 108 n y C5A C6A COA sing 109 n y C5A N7A COA sing 110 n y C6A N6A COA sing 111 n n N6A H61A COA sing 112 n n N6A H62A COA sing 113 n n N7A C8A COA doub 114 n y C8A N9A COA sing 115 n y C8A H8A COA sing 116 n n N9A C1B COA sing 117 n n C1B C2B COA sing 118 n n C1B O4B COA sing 119 n n C1B H1B COA sing 120 n n C2B O2B COA sing 121 n n C2B C3B COA sing 122 n n C2B H2B COA sing 123 n n O2B HO2A COA sing 124 n n C3B O3B COA sing 125 n n C3B C4B COA sing 126 n n C3B H3B COA sing 127 n n O3B P3B COA sing 128 n n P3B O7A COA doub 129 n n P3B O8A COA sing 130 n n P3B O9A COA sing 131 n n O8A HOA8 COA sing 132 n n O9A HOA9 COA sing 133 n n C4B O4B COA sing 134 n n C4B C5B COA sing 135 n n C4B H4B COA sing 136 n n C5B O5B COA sing 137 n n C5B H51A COA sing 138 n n C5B H52A COA sing 139 n n O5B P1A COA sing 140 n n P1A O1A COA doub 141 n n P1A O2A COA sing 142 n n P1A O3A COA sing 143 n n O2A HOA2 COA sing 144 n n O3A P2A COA sing 145 n n P2A O4A COA doub 146 n n P2A O5A COA sing 147 n n P2A O6A COA sing 148 n n O5A HOA5 COA sing 149 n n O6A CCP COA sing 150 n n CBP CCP COA sing 151 n n CBP CDP COA sing 152 n n CBP CEP COA sing 153 n n CBP CAP COA sing 154 n n CCP H121 COA sing 155 n n CCP H122 COA sing 156 n n CDP H131 COA sing 157 n n CDP H132 COA sing 158 n n CDP H133 COA sing 159 n n CEP H141 COA sing 160 n n CEP H142 COA sing 161 n n CEP H143 COA sing 162 n n CAP OAP COA sing 163 n n CAP C9P COA sing 164 n n CAP H10 COA sing 165 n n OAP HO1 COA sing 166 n n C9P O9P COA doub 167 n n C9P N8P COA sing 168 n n N8P C7P COA sing 169 n n N8P HN8 COA sing 170 n n C7P C6P COA sing 171 n n C7P H71 COA sing 172 n n C7P H72 COA sing 173 n n C6P C5P COA sing 174 n n C6P H61 COA sing 175 n n C6P H62 COA sing 176 n n C5P O5P COA doub 177 n n C5P N4P COA sing 178 n n N4P C3P COA sing 179 n n N4P HN4 COA sing 180 n n C3P C2P COA sing 181 n n C3P H31 COA sing 182 n n C3P H32 COA sing 183 n n C2P S1P COA sing 184 n n C2P H21 COA sing 185 n n C2P H22 COA sing 186 n n S1P HS1 COA sing 187 n n # _atom_sites.entry_id 7WX6 _atom_sites.fract_transf_matrix[1][1] 0.01388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 301 1 COA COA . C 2 COA A 1 302 2 COA COA . D 3 CLM A 1 303 1 CLM CLM . E 4 HOH A 1 401 81 HOH HOH . E 4 HOH A 2 402 7 HOH HOH . E 4 HOH A 3 403 60 HOH HOH . E 4 HOH A 4 404 116 HOH HOH . E 4 HOH A 5 405 25 HOH HOH . E 4 HOH A 6 406 101 HOH HOH . E 4 HOH A 7 407 57 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 11 HOH HOH . E 4 HOH A 10 410 45 HOH HOH . E 4 HOH A 11 411 35 HOH HOH . E 4 HOH A 12 412 20 HOH HOH . E 4 HOH A 13 413 21 HOH HOH . E 4 HOH A 14 414 1 HOH HOH . E 4 HOH A 15 415 31 HOH HOH . E 4 HOH A 16 416 23 HOH HOH . E 4 HOH A 17 417 39 HOH HOH . E 4 HOH A 18 418 6 HOH HOH . E 4 HOH A 19 419 22 HOH HOH . E 4 HOH A 20 420 15 HOH HOH . E 4 HOH A 21 421 30 HOH HOH . E 4 HOH A 22 422 18 HOH HOH . E 4 HOH A 23 423 29 HOH HOH . E 4 HOH A 24 424 92 HOH HOH . E 4 HOH A 25 425 80 HOH HOH . E 4 HOH A 26 426 5 HOH HOH . E 4 HOH A 27 427 32 HOH HOH . E 4 HOH A 28 428 61 HOH HOH . E 4 HOH A 29 429 17 HOH HOH . E 4 HOH A 30 430 12 HOH HOH . E 4 HOH A 31 431 94 HOH HOH . E 4 HOH A 32 432 2 HOH HOH . E 4 HOH A 33 433 73 HOH HOH . E 4 HOH A 34 434 3 HOH HOH . E 4 HOH A 35 435 42 HOH HOH . E 4 HOH A 36 436 111 HOH HOH . E 4 HOH A 37 437 59 HOH HOH . E 4 HOH A 38 438 19 HOH HOH . E 4 HOH A 39 439 13 HOH HOH . E 4 HOH A 40 440 64 HOH HOH . E 4 HOH A 41 441 109 HOH HOH . E 4 HOH A 42 442 99 HOH HOH . E 4 HOH A 43 443 26 HOH HOH . E 4 HOH A 44 444 71 HOH HOH . E 4 HOH A 45 445 9 HOH HOH . E 4 HOH A 46 446 46 HOH HOH . E 4 HOH A 47 447 24 HOH HOH . E 4 HOH A 48 448 16 HOH HOH . E 4 HOH A 49 449 88 HOH HOH . E 4 HOH A 50 450 62 HOH HOH . E 4 HOH A 51 451 51 HOH HOH . E 4 HOH A 52 452 79 HOH HOH . E 4 HOH A 53 453 40 HOH HOH . E 4 HOH A 54 454 53 HOH HOH . E 4 HOH A 55 455 63 HOH HOH . E 4 HOH A 56 456 47 HOH HOH . E 4 HOH A 57 457 67 HOH HOH . E 4 HOH A 58 458 27 HOH HOH . E 4 HOH A 59 459 50 HOH HOH . E 4 HOH A 60 460 10 HOH HOH . E 4 HOH A 61 461 44 HOH HOH . E 4 HOH A 62 462 49 HOH HOH . E 4 HOH A 63 463 55 HOH HOH . E 4 HOH A 64 464 86 HOH HOH . E 4 HOH A 65 465 68 HOH HOH . E 4 HOH A 66 466 4 HOH HOH . E 4 HOH A 67 467 14 HOH HOH . E 4 HOH A 68 468 82 HOH HOH . E 4 HOH A 69 469 104 HOH HOH . E 4 HOH A 70 470 56 HOH HOH . E 4 HOH A 71 471 78 HOH HOH . E 4 HOH A 72 472 107 HOH HOH . E 4 HOH A 73 473 83 HOH HOH . E 4 HOH A 74 474 34 HOH HOH . E 4 HOH A 75 475 75 HOH HOH . E 4 HOH A 76 476 52 HOH HOH . E 4 HOH A 77 477 114 HOH HOH . E 4 HOH A 78 478 93 HOH HOH . E 4 HOH A 79 479 108 HOH HOH . E 4 HOH A 80 480 54 HOH HOH . E 4 HOH A 81 481 90 HOH HOH . E 4 HOH A 82 482 69 HOH HOH . E 4 HOH A 83 483 37 HOH HOH . E 4 HOH A 84 484 115 HOH HOH . E 4 HOH A 85 485 113 HOH HOH . E 4 HOH A 86 486 89 HOH HOH . E 4 HOH A 87 487 43 HOH HOH . E 4 HOH A 88 488 74 HOH HOH . E 4 HOH A 89 489 112 HOH HOH . E 4 HOH A 90 490 95 HOH HOH . E 4 HOH A 91 491 48 HOH HOH . E 4 HOH A 92 492 91 HOH HOH . E 4 HOH A 93 493 103 HOH HOH . E 4 HOH A 94 494 100 HOH HOH . E 4 HOH A 95 495 38 HOH HOH . E 4 HOH A 96 496 106 HOH HOH . E 4 HOH A 97 497 41 HOH HOH . E 4 HOH A 98 498 72 HOH HOH . E 4 HOH A 99 499 102 HOH HOH . E 4 HOH A 100 500 87 HOH HOH . E 4 HOH A 101 501 33 HOH HOH . E 4 HOH A 102 502 84 HOH HOH . E 4 HOH A 103 503 98 HOH HOH . E 4 HOH A 104 504 58 HOH HOH . E 4 HOH A 105 505 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 -29.458 2.587 13.194 1 48.21 ? N1A COA 301 A 1 HETATM 2 C C2A COA . . . B 2 -28.922 3.754 12.844 1 50.03 ? C2A COA 301 A 1 HETATM 3 N N3A COA . . . B 2 -27.901 4.307 13.563 1 48.91 ? N3A COA 301 A 1 HETATM 4 C C4A COA . . . B 2 -27.403 3.691 14.67 1 52.46 ? C4A COA 301 A 1 HETATM 5 C C5A COA . . . B 2 -27.951 2.514 15.018 1 52.94 ? C5A COA 301 A 1 HETATM 6 C C6A COA . . . B 2 -28.976 1.956 14.281 1 52.72 ? C6A COA 301 A 1 HETATM 7 N N6A COA . . . B 2 -29.805 0.751 14.32 1 45.35 ? N6A COA 301 A 1 HETATM 8 N N7A COA . . . B 2 -27.342 2.073 16.098 1 49.08 ? N7A COA 301 A 1 HETATM 9 C C8A COA . . . B 2 -26.405 2.959 16.447 1 50.58 ? C8A COA 301 A 1 HETATM 10 N N9A COA . . . B 2 -26.44 3.956 15.588 1 55.16 ? N9A COA 301 A 1 HETATM 11 C C1B COA . . . B 2 -25.746 5.196 15.356 1 61.86 ? C1B COA 301 A 1 HETATM 12 C C2B COA . . . B 2 -26.476 6.321 15.207 1 70.37 ? C2B COA 301 A 1 HETATM 13 O O2B COA . . . B 2 -25.615 7.456 14.923 1 77.4 ? O2B COA 301 A 1 HETATM 14 C C3B COA . . . B 2 -27.147 6.558 16.66 1 65.16 ? C3B COA 301 A 1 HETATM 15 O O3B COA . . . B 2 -27.664 7.869 16.766 1 75.39 ? O3B COA 301 A 1 HETATM 16 P P3B COA . . . B 2 -28.732 8.276 17.979 1 78.79 ? P3B COA 301 A 1 HETATM 17 O O7A COA . . . B 2 -29.841 9.156 17.406 1 84.4 ? O7A COA 301 A 1 HETATM 18 O O8A COA . . . B 2 -29.365 7.053 18.584 1 75.18 ? O8A COA 301 A 1 HETATM 19 O O9A COA . . . B 2 -27.984 9.03 19.009 1 80.69 ? O9A COA 301 A 1 HETATM 20 C C4B COA . . . B 2 -26.084 6.369 17.526 1 53.81 ? C4B COA 301 A 1 HETATM 21 O O4B COA . . . B 2 -25.006 5.575 16.738 1 56.02 ? O4B COA 301 A 1 HETATM 22 C C5B COA . . . B 2 -26.599 5.56 18.678 1 43.42 ? C5B COA 301 A 1 HETATM 23 O O5B COA . . . B 2 -25.509 5.221 19.49 1 36.01 ? O5B COA 301 A 1 HETATM 24 P P1A COA . . . B 2 -25.801 4.086 20.649 1 33.31 ? P1A COA 301 A 1 HETATM 25 O O1A COA . . . B 2 -24.685 4.245 21.681 1 28.71 ? O1A COA 301 A 1 HETATM 26 O O2A COA . . . B 2 -27.196 4.232 21.244 1 23.31 ? O2A COA 301 A 1 HETATM 27 O O3A COA . . . B 2 -25.821 2.607 19.902 1 26.22 ? O3A COA 301 A 1 HETATM 28 P P2A COA . . . B 2 -26.328 1.249 20.686 1 24.97 ? P2A COA 301 A 1 HETATM 29 O O4A COA . . . B 2 -26.221 1.502 22.168 1 26.09 ? O4A COA 301 A 1 HETATM 30 O O5A COA . . . B 2 -27.745 0.827 20.273 1 22.42 ? O5A COA 301 A 1 HETATM 31 O O6A COA . . . B 2 -25.327 0.054 20.236 1 23.62 ? O6A COA 301 A 1 HETATM 32 C CBP COA . . . B 2 -24.505 -1.412 18.539 1 18.42 ? CBP COA 301 A 1 HETATM 33 C CCP COA . . . B 2 -24.943 0.038 18.889 1 15.04 ? CCP COA 301 A 1 HETATM 34 C CDP COA . . . B 2 -24.134 -1.501 16.986 1 16.5 ? CDP COA 301 A 1 HETATM 35 C CEP COA . . . B 2 -23.247 -1.756 19.363 1 12.93 ? CEP COA 301 A 1 HETATM 36 C CAP COA . . . B 2 -25.69 -2.319 18.873 1 21.14 ? CAP COA 301 A 1 HETATM 37 O OAP COA . . . B 2 -26.673 -2.103 17.915 1 24.49 ? OAP COA 301 A 1 HETATM 38 C C9P COA . . . B 2 -25.213 -3.796 18.884 1 15.6 ? C9P COA 301 A 1 HETATM 39 O O9P COA . . . B 2 -24.803 -4.305 19.84 1 15.72 ? O9P COA 301 A 1 HETATM 40 N N8P COA . . . B 2 -25.306 -4.555 17.613 1 12.27 ? N8P COA 301 A 1 HETATM 41 C C7P COA . . . B 2 -24.809 -5.964 17.575 1 12.94 ? C7P COA 301 A 1 HETATM 42 C C6P COA . . . B 2 -23.277 -5.884 17.512 1 12.58 ? C6P COA 301 A 1 HETATM 43 C C5P COA . . . B 2 -22.702 -4.901 16.426 1 19.98 ? C5P COA 301 A 1 HETATM 44 O O5P COA . . . B 2 -23.32 -4.585 15.426 1 22.7 ? O5P COA 301 A 1 HETATM 45 N N4P COA . . . B 2 -21.358 -4.385 16.626 1 24.62 ? N4P COA 301 A 1 HETATM 46 C C3P COA . . . B 2 -20.7 -3.483 15.683 1 19.68 ? C3P COA 301 A 1 HETATM 47 C C2P COA . . . B 2 -20.244 -2.261 16.549 1 35.7 ? C2P COA 301 A 1 HETATM 48 S S1P COA . . . B 2 -20.16 -0.695 15.565 1 42.12 ? S1P COA 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #