data_7WXS # _model_server_result.job_id pBVU2gzqJZAlZVs7qf5KBg _model_server_result.datetime_utc '2024-11-09 02:44:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wxs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7WXS # _exptl.entry_id 7WXS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WXS _cell.length_a 79.114 _cell.length_b 79.114 _cell.length_c 37.058 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WXS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc5 B NA NA . A NA 201 1_555 E O HOH . A HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc6 B NA NA . A NA 201 1_555 E O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7WXS _atom_sites.fract_transf_matrix[1][1] 0.01264 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 201 NA NA . C 3 CL A 1 202 206 CL CL . D 4 GOL A 1 203 209 GOL GOL . E 5 HOH A 1 301 25 HOH HOH . E 5 HOH A 2 302 88 HOH HOH . E 5 HOH A 3 303 251 HOH HOH . E 5 HOH A 4 304 26 HOH HOH . E 5 HOH A 5 305 149 HOH HOH . E 5 HOH A 6 306 252 HOH HOH . E 5 HOH A 7 307 90 HOH HOH . E 5 HOH A 8 308 158 HOH HOH . E 5 HOH A 9 309 24 HOH HOH . E 5 HOH A 10 310 143 HOH HOH . E 5 HOH A 11 311 147 HOH HOH . E 5 HOH A 12 312 150 HOH HOH . E 5 HOH A 13 313 9 HOH HOH . E 5 HOH A 14 314 84 HOH HOH . E 5 HOH A 15 315 1 HOH HOH . E 5 HOH A 16 316 134 HOH HOH . E 5 HOH A 17 317 91 HOH HOH . E 5 HOH A 18 318 64 HOH HOH . E 5 HOH A 19 319 145 HOH HOH . E 5 HOH A 20 320 17 HOH HOH . E 5 HOH A 21 321 27 HOH HOH . E 5 HOH A 22 322 69 HOH HOH . E 5 HOH A 23 323 96 HOH HOH . E 5 HOH A 24 324 50 HOH HOH . E 5 HOH A 25 325 35 HOH HOH . E 5 HOH A 26 326 3 HOH HOH . E 5 HOH A 27 327 44 HOH HOH . E 5 HOH A 28 328 75 HOH HOH . E 5 HOH A 29 329 11 HOH HOH . E 5 HOH A 30 330 100 HOH HOH . E 5 HOH A 31 331 98 HOH HOH . E 5 HOH A 32 332 146 HOH HOH . E 5 HOH A 33 333 34 HOH HOH . E 5 HOH A 34 334 21 HOH HOH . E 5 HOH A 35 335 82 HOH HOH . E 5 HOH A 36 336 117 HOH HOH . E 5 HOH A 37 337 23 HOH HOH . E 5 HOH A 38 338 72 HOH HOH . E 5 HOH A 39 339 58 HOH HOH . E 5 HOH A 40 340 7 HOH HOH . E 5 HOH A 41 341 73 HOH HOH . E 5 HOH A 42 342 99 HOH HOH . E 5 HOH A 43 343 68 HOH HOH . E 5 HOH A 44 344 85 HOH HOH . E 5 HOH A 45 345 253 HOH HOH . E 5 HOH A 46 346 66 HOH HOH . E 5 HOH A 47 347 227 HOH HOH . E 5 HOH A 48 348 113 HOH HOH . E 5 HOH A 49 349 104 HOH HOH . E 5 HOH A 50 350 29 HOH HOH . E 5 HOH A 51 351 13 HOH HOH . E 5 HOH A 52 352 12 HOH HOH . E 5 HOH A 53 353 16 HOH HOH . E 5 HOH A 54 354 86 HOH HOH . E 5 HOH A 55 355 19 HOH HOH . E 5 HOH A 56 356 40 HOH HOH . E 5 HOH A 57 357 30 HOH HOH . E 5 HOH A 58 358 177 HOH HOH . E 5 HOH A 59 359 53 HOH HOH . E 5 HOH A 60 360 37 HOH HOH . E 5 HOH A 61 361 135 HOH HOH . E 5 HOH A 62 362 154 HOH HOH . E 5 HOH A 63 363 6 HOH HOH . E 5 HOH A 64 364 15 HOH HOH . E 5 HOH A 65 365 105 HOH HOH . E 5 HOH A 66 366 234 HOH HOH . E 5 HOH A 67 367 45 HOH HOH . E 5 HOH A 68 368 48 HOH HOH . E 5 HOH A 69 369 43 HOH HOH . E 5 HOH A 70 370 71 HOH HOH . E 5 HOH A 71 371 5 HOH HOH . E 5 HOH A 72 372 121 HOH HOH . E 5 HOH A 73 373 46 HOH HOH . E 5 HOH A 74 374 60 HOH HOH . E 5 HOH A 75 375 76 HOH HOH . E 5 HOH A 76 376 4 HOH HOH . E 5 HOH A 77 377 122 HOH HOH . E 5 HOH A 78 378 14 HOH HOH . E 5 HOH A 79 379 8 HOH HOH . E 5 HOH A 80 380 165 HOH HOH . E 5 HOH A 81 381 118 HOH HOH . E 5 HOH A 82 382 115 HOH HOH . E 5 HOH A 83 383 140 HOH HOH . E 5 HOH A 84 384 125 HOH HOH . E 5 HOH A 85 385 10 HOH HOH . E 5 HOH A 86 386 110 HOH HOH . E 5 HOH A 87 387 65 HOH HOH . E 5 HOH A 88 388 152 HOH HOH . E 5 HOH A 89 389 109 HOH HOH . E 5 HOH A 90 390 38 HOH HOH . E 5 HOH A 91 391 127 HOH HOH . E 5 HOH A 92 392 119 HOH HOH . E 5 HOH A 93 393 171 HOH HOH . E 5 HOH A 94 394 136 HOH HOH . E 5 HOH A 95 395 20 HOH HOH . E 5 HOH A 96 396 111 HOH HOH . E 5 HOH A 97 397 101 HOH HOH . E 5 HOH A 98 398 167 HOH HOH . E 5 HOH A 99 399 148 HOH HOH . E 5 HOH A 100 400 238 HOH HOH . E 5 HOH A 101 401 237 HOH HOH . E 5 HOH A 102 402 139 HOH HOH . E 5 HOH A 103 403 188 HOH HOH . E 5 HOH A 104 404 257 HOH HOH . E 5 HOH A 105 405 124 HOH HOH . E 5 HOH A 106 406 74 HOH HOH . E 5 HOH A 107 407 87 HOH HOH . E 5 HOH A 108 408 22 HOH HOH . E 5 HOH A 109 409 18 HOH HOH . E 5 HOH A 110 410 106 HOH HOH . E 5 HOH A 111 411 229 HOH HOH . E 5 HOH A 112 412 130 HOH HOH . E 5 HOH A 113 413 218 HOH HOH . E 5 HOH A 114 414 103 HOH HOH . E 5 HOH A 115 415 236 HOH HOH . E 5 HOH A 116 416 59 HOH HOH . E 5 HOH A 117 417 114 HOH HOH . E 5 HOH A 118 418 63 HOH HOH . E 5 HOH A 119 419 2 HOH HOH . E 5 HOH A 120 420 33 HOH HOH . E 5 HOH A 121 421 39 HOH HOH . E 5 HOH A 122 422 92 HOH HOH . E 5 HOH A 123 423 126 HOH HOH . E 5 HOH A 124 424 242 HOH HOH . E 5 HOH A 125 425 250 HOH HOH . E 5 HOH A 126 426 131 HOH HOH . E 5 HOH A 127 427 183 HOH HOH . E 5 HOH A 128 428 80 HOH HOH . E 5 HOH A 129 429 132 HOH HOH . E 5 HOH A 130 430 248 HOH HOH . E 5 HOH A 131 431 112 HOH HOH . E 5 HOH A 132 432 255 HOH HOH . E 5 HOH A 133 433 49 HOH HOH . E 5 HOH A 134 434 51 HOH HOH . E 5 HOH A 135 435 166 HOH HOH . E 5 HOH A 136 436 89 HOH HOH . E 5 HOH A 137 437 102 HOH HOH . E 5 HOH A 138 438 133 HOH HOH . E 5 HOH A 139 439 256 HOH HOH . E 5 HOH A 140 440 94 HOH HOH . E 5 HOH A 141 441 42 HOH HOH . E 5 HOH A 142 442 107 HOH HOH . E 5 HOH A 143 443 160 HOH HOH . E 5 HOH A 144 444 233 HOH HOH . E 5 HOH A 145 445 245 HOH HOH . E 5 HOH A 146 446 153 HOH HOH . E 5 HOH A 147 447 254 HOH HOH . E 5 HOH A 148 448 196 HOH HOH . E 5 HOH A 149 449 28 HOH HOH . E 5 HOH A 150 450 151 HOH HOH . E 5 HOH A 151 451 116 HOH HOH . E 5 HOH A 152 452 249 HOH HOH . E 5 HOH A 153 453 208 HOH HOH . E 5 HOH A 154 454 244 HOH HOH . E 5 HOH A 155 455 61 HOH HOH . E 5 HOH A 156 456 70 HOH HOH . E 5 HOH A 157 457 216 HOH HOH . E 5 HOH A 158 458 52 HOH HOH . E 5 HOH A 159 459 241 HOH HOH . E 5 HOH A 160 460 144 HOH HOH . E 5 HOH A 161 461 108 HOH HOH . E 5 HOH A 162 462 159 HOH HOH . E 5 HOH A 163 463 77 HOH HOH . E 5 HOH A 164 464 161 HOH HOH . E 5 HOH A 165 465 54 HOH HOH . E 5 HOH A 166 466 67 HOH HOH . E 5 HOH A 167 467 142 HOH HOH . E 5 HOH A 168 468 78 HOH HOH . E 5 HOH A 169 469 120 HOH HOH . E 5 HOH A 170 470 240 HOH HOH . E 5 HOH A 171 471 93 HOH HOH . E 5 HOH A 172 472 163 HOH HOH . E 5 HOH A 173 473 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -4.46 -23.675 4.265 0 10.61 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . D 4 -4.65 -25.001 3.891 0 11.3 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . D 4 -4.002 -23.684 5.735 0 11.07 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . D 4 -2.742 -24.243 5.881 0 10.45 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . D 4 -4.038 -22.204 6.163 0 10.71 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . D 4 -3.712 -22.176 7.513 0 11.12 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #