data_7WYF # _model_server_result.job_id HteZrnXXzfO6Qj3e9TMnQw _model_server_result.datetime_utc '2024-11-13 14:34:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7WYF # _exptl.entry_id 7WYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WYF _cell.length_a 57.71 _cell.length_b 71.77 _cell.length_c 179.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 122 n n N1 C10 FMN doub 123 n n C2 O2 FMN doub 124 n n C2 N3 FMN sing 125 n n N3 C4 FMN sing 126 n n N3 HN3 FMN sing 127 n n C4 O4 FMN doub 128 n n C4 C4A FMN sing 129 n n C4A N5 FMN doub 130 n n C4A C10 FMN sing 131 n n N5 C5A FMN sing 132 n n C5A C6 FMN doub 133 n y C5A C9A FMN sing 134 n y C6 C7 FMN sing 135 n y C6 H6 FMN sing 136 n n C7 C7M FMN sing 137 n n C7 C8 FMN doub 138 n y C7M HM71 FMN sing 139 n n C7M HM72 FMN sing 140 n n C7M HM73 FMN sing 141 n n C8 C8M FMN sing 142 n n C8 C9 FMN sing 143 n y C8M HM81 FMN sing 144 n n C8M HM82 FMN sing 145 n n C8M HM83 FMN sing 146 n n C9 C9A FMN doub 147 n y C9 H9 FMN sing 148 n n C9A N10 FMN sing 149 n n N10 C10 FMN sing 150 n n N10 C1' FMN sing 151 n n C1' C2' FMN sing 152 n n C1' "H1'1" FMN sing 153 n n C1' "H1'2" FMN sing 154 n n C2' O2' FMN sing 155 n n C2' C3' FMN sing 156 n n C2' H2' FMN sing 157 n n O2' HO2' FMN sing 158 n n C3' O3' FMN sing 159 n n C3' C4' FMN sing 160 n n C3' H3' FMN sing 161 n n O3' HO3' FMN sing 162 n n C4' O4' FMN sing 163 n n C4' C5' FMN sing 164 n n C4' H4' FMN sing 165 n n O4' HO4' FMN sing 166 n n C5' O5' FMN sing 167 n n C5' "H5'1" FMN sing 168 n n C5' "H5'2" FMN sing 169 n n O5' P FMN sing 170 n n P O1P FMN doub 171 n n P O2P FMN sing 172 n n P O3P FMN sing 173 n n O2P HOP2 FMN sing 174 n n O3P HOP3 FMN sing 175 n n # _atom_sites.entry_id 7WYF _atom_sites.fract_transf_matrix[1][1] 0.017328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 601 1002 FMN FMN . C 3 ORO A 1 602 1003 ORO ORO . D 4 7NE A 1 603 1 7NE 188 . E 5 HOH A 1 701 2 HOH HOH . E 5 HOH A 2 702 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 13.989 14.807 29.03 1 40.21 ? N1 FMN 601 A 1 HETATM 2 C C2 FMN . . . B 2 15.301 14.601 29.338 1 38.81 ? C2 FMN 601 A 1 HETATM 3 O O2 FMN . . . B 2 15.988 15.515 29.897 1 39.98 ? O2 FMN 601 A 1 HETATM 4 N N3 FMN . . . B 2 15.895 13.442 29.055 1 36.91 ? N3 FMN 601 A 1 HETATM 5 C C4 FMN . . . B 2 15.257 12.435 28.474 1 37.34 ? C4 FMN 601 A 1 HETATM 6 O O4 FMN . . . B 2 15.89 11.383 28.262 1 39.29 ? O4 FMN 601 A 1 HETATM 7 C C4A FMN . . . B 2 13.824 12.573 28.114 1 38.28 ? C4A FMN 601 A 1 HETATM 8 N N5 FMN . . . B 2 13.101 11.589 27.53 1 37.59 ? N5 FMN 601 A 1 HETATM 9 C C5A FMN . . . B 2 11.803 11.77 27.204 1 37.25 ? C5A FMN 601 A 1 HETATM 10 C C6 FMN . . . B 2 11.107 10.735 26.586 1 37.62 ? C6 FMN 601 A 1 HETATM 11 C C7 FMN . . . B 2 9.761 10.894 26.246 1 37.44 ? C7 FMN 601 A 1 HETATM 12 C C7M FMN . . . B 2 8.956 9.803 25.592 1 37.5 ? C7M FMN 601 A 1 HETATM 13 C C8 FMN . . . B 2 9.085 12.162 26.543 1 38 ? C8 FMN 601 A 1 HETATM 14 C C8M FMN . . . B 2 7.643 12.277 26.161 1 39.3 ? C8M FMN 601 A 1 HETATM 15 C C9 FMN . . . B 2 9.768 13.21 27.151 1 37.45 ? C9 FMN 601 A 1 HETATM 16 C C9A FMN . . . B 2 11.111 13.062 27.498 1 37.22 ? C9A FMN 601 A 1 HETATM 17 N N10 FMN . . . B 2 11.85 14.095 28.113 1 38 ? N10 FMN 601 A 1 HETATM 18 C C10 FMN . . . B 2 13.207 13.869 28.437 1 39.19 ? C10 FMN 601 A 1 HETATM 19 C C1' FMN . . . B 2 11.249 15.392 28.423 1 38.21 ? C1' FMN 601 A 1 HETATM 20 C C2' FMN . . . B 2 11.317 16.34 27.224 1 37.18 ? C2' FMN 601 A 1 HETATM 21 O O2' FMN . . . B 2 12.685 16.632 26.905 1 35.53 ? O2' FMN 601 A 1 HETATM 22 C C3' FMN . . . B 2 10.558 17.65 27.503 1 38.14 ? C3' FMN 601 A 1 HETATM 23 O O3' FMN . . . B 2 11.086 18.407 28.609 1 37.94 ? O3' FMN 601 A 1 HETATM 24 C C4' FMN . . . B 2 9.106 17.379 27.844 1 38.26 ? C4' FMN 601 A 1 HETATM 25 O O4' FMN . . . B 2 8.604 16.387 26.952 1 35.19 ? O4' FMN 601 A 1 HETATM 26 C C5' FMN . . . B 2 8.306 18.653 27.718 1 40.8 ? C5' FMN 601 A 1 HETATM 27 O O5' FMN . . . B 2 8.185 18.934 26.325 1 44.68 ? O5' FMN 601 A 1 HETATM 28 P P FMN . . . B 2 6.768 19.286 25.641 1 47.21 ? P FMN 601 A 1 HETATM 29 O O1P FMN . . . B 2 6.539 18.065 24.792 1 45.89 ? O1P FMN 601 A 1 HETATM 30 O O2P FMN . . . B 2 7.139 20.551 24.875 1 46.32 ? O2P FMN 601 A 1 HETATM 31 O O3P FMN . . . B 2 5.73 19.45 26.752 1 41.4 ? O3P FMN 601 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #