data_7WYF # _model_server_result.job_id 3AigGE-HxmIj9UixogxImg _model_server_result.datetime_utc '2024-11-13 14:43:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wyf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7WYF # _exptl.entry_id 7WYF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WYF _cell.length_a 57.71 _cell.length_b 71.77 _cell.length_c 179.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 330 n y N1 C6 ORO sing 331 n y N1 HN1 ORO sing 332 n n C2 O2 ORO doub 333 n n C2 N3 ORO sing 334 n y N3 C4 ORO sing 335 n y N3 HN3 ORO sing 336 n n C4 O4 ORO doub 337 n n C4 C5 ORO sing 338 n y C5 C6 ORO doub 339 n y C5 H5 ORO sing 340 n n C6 C7 ORO sing 341 n n C7 O71 ORO doub 342 n n C7 O72 ORO sing 343 n n O72 HO7 ORO sing 344 n n # _atom_sites.entry_id 7WYF _atom_sites.fract_transf_matrix[1][1] 0.017328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 601 1002 FMN FMN . C 3 ORO A 1 602 1003 ORO ORO . D 4 7NE A 1 603 1 7NE 188 . E 5 HOH A 1 701 2 HOH HOH . E 5 HOH A 2 702 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 11.034 10.687 30.897 1 41.19 ? N1 ORO 602 A 1 HETATM 2 C C2 ORO . . . C 3 10.758 12.024 31.044 1 42.01 ? C2 ORO 602 A 1 HETATM 3 O O2 ORO . . . C 3 9.617 12.459 30.995 1 40.13 ? O2 ORO 602 A 1 HETATM 4 N N3 ORO . . . C 3 11.85 12.838 31.243 1 44.29 ? N3 ORO 602 A 1 HETATM 5 C C4 ORO . . . C 3 13.168 12.44 31.339 1 45.97 ? C4 ORO 602 A 1 HETATM 6 O O4 ORO . . . C 3 14.054 13.279 31.551 1 45.72 ? O4 ORO 602 A 1 HETATM 7 C C5 ORO . . . C 3 13.38 11.027 31.179 1 43.6 ? C5 ORO 602 A 1 HETATM 8 C C6 ORO . . . C 3 12.298 10.198 30.963 1 40.98 ? C6 ORO 602 A 1 HETATM 9 C C7 ORO . . . C 3 12.422 8.745 30.804 1 40.75 ? C7 ORO 602 A 1 HETATM 10 O O71 ORO . . . C 3 13.234 8.378 30.008 1 42.77 ? O71 ORO 602 A 1 HETATM 11 O O72 ORO . . . C 3 11.716 8.035 31.507 1 42.96 ? O72 ORO 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #