data_7WZ3 # _model_server_result.job_id OPoB7earYNbrF32Gj94hJw _model_server_result.datetime_utc '2024-10-20 12:59:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wz3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":601}' # _entry.id 7WZ3 # _exptl.entry_id 7WZ3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7WZ3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WZ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 Q N N ? 9 R N N ? 9 S N N ? 9 T N N ? 9 U N N ? 9 V N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id P _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 91 _struct_conn.ptnr1_auth_asym_id z _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 91 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id V _struct_conn.ptnr2_label_atom_id O1B _struct_conn.ptnr2_label_comp_id ADP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id z _struct_conn.ptnr2_auth_comp_id ADP _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.298 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7WZ3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 ADP g 1 601 601 ADP ADP . R 9 ADP G 1 601 601 ADP ADP . S 9 ADP Q 1 601 601 ADP ADP . T 9 ADP q 1 601 601 ADP ADP . U 9 ADP Z 1 601 601 ADP ADP . V 9 ADP z 1 601 601 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . V 9 174.981 143.108 112.536 1 37.2 ? PB ADP 601 z 1 HETATM 2 O O1B ADP . . . V 9 173.876 142.278 111.922 1 37.2 ? O1B ADP 601 z 1 HETATM 3 O O2B ADP . . . V 9 175.459 142.614 113.879 1 37.2 ? O2B ADP 601 z 1 HETATM 4 O O3B ADP . . . V 9 174.731 144.595 112.472 1 37.2 ? O3B ADP 601 z 1 HETATM 5 P PA ADP . . . V 9 177.544 143.83 111.631 1 37.2 ? PA ADP 601 z 1 HETATM 6 O O1A ADP . . . V 9 178.767 142.953 111.51 1 37.2 ? O1A ADP 601 z 1 HETATM 7 O O2A ADP . . . V 9 177.399 144.733 112.832 1 37.2 ? O2A ADP 601 z 1 HETATM 8 O O3A ADP . . . V 9 176.248 142.873 111.567 1 37.2 ? O3A ADP 601 z 1 HETATM 9 O O5' ADP . . . V 9 177.437 144.714 110.288 1 37.2 ? O5' ADP 601 z 1 HETATM 10 C C5' ADP . . . V 9 176.201 145.318 109.918 1 37.2 ? C5' ADP 601 z 1 HETATM 11 C C4' ADP . . . V 9 176.33 146.125 108.626 1 37.2 ? C4' ADP 601 z 1 HETATM 12 O O4' ADP . . . V 9 177.277 147.194 108.748 1 37.2 ? O4' ADP 601 z 1 HETATM 13 C C3' ADP . . . V 9 176.787 145.282 107.443 1 37.2 ? C3' ADP 601 z 1 HETATM 14 O O3' ADP . . . V 9 175.675 144.908 106.625 1 37.2 ? O3' ADP 601 z 1 HETATM 15 C C2' ADP . . . V 9 177.756 146.164 106.679 1 37.2 ? C2' ADP 601 z 1 HETATM 16 O O2' ADP . . . V 9 177.303 146.42 105.347 1 37.2 ? O2' ADP 601 z 1 HETATM 17 C C1' ADP . . . V 9 177.848 147.462 107.462 1 37.2 ? C1' ADP 601 z 1 HETATM 18 N N9 ADP . . . V 9 179.272 147.869 107.551 1 37.2 ? N9 ADP 601 z 1 HETATM 19 C C8 ADP . . . V 9 180.031 147.809 108.659 1 37.2 ? C8 ADP 601 z 1 HETATM 20 N N7 ADP . . . V 9 181.288 148.253 108.396 1 37.2 ? N7 ADP 601 z 1 HETATM 21 C C5 ADP . . . V 9 181.347 148.593 107.096 1 37.2 ? C5 ADP 601 z 1 HETATM 22 C C6 ADP . . . V 9 182.384 149.162 106.189 1 37.2 ? C6 ADP 601 z 1 HETATM 23 N N6 ADP . . . V 9 183.653 149.481 106.633 1 37.2 ? N6 ADP 601 z 1 HETATM 24 N N1 ADP . . . V 9 182.006 149.366 104.901 1 37.2 ? N1 ADP 601 z 1 HETATM 25 C C2 ADP . . . V 9 180.761 149.121 104.454 1 37.2 ? C2 ADP 601 z 1 HETATM 26 N N3 ADP . . . V 9 179.787 148.622 105.237 1 37.2 ? N3 ADP 601 z 1 HETATM 27 C C4 ADP . . . V 9 180.008 148.351 106.545 1 37.2 ? C4 ADP 601 z 1 # _model_server_stats.io_time_ms 196 _model_server_stats.parse_time_ms 111 _model_server_stats.create_model_time_ms 181 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #