data_7WZF # _model_server_result.job_id ki7eyTMdCeJahG8f4sps1A _model_server_result.datetime_utc '2024-11-14 04:27:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7wzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7WZF # _exptl.entry_id 7WZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7WZF _cell.length_a 107.741 _cell.length_b 107.741 _cell.length_c 109.163 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7WZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 7WZF _atom_sites.fract_transf_matrix[1][1] 0.009282 _atom_sites.fract_transf_matrix[1][2] 0.005359 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 301 SAH SAH . C 3 HOH A 1 401 11 HOH HOH . C 3 HOH A 2 402 86 HOH HOH . C 3 HOH A 3 403 306 HOH HOH . C 3 HOH A 4 404 193 HOH HOH . C 3 HOH A 5 405 148 HOH HOH . C 3 HOH A 6 406 237 HOH HOH . C 3 HOH A 7 407 182 HOH HOH . C 3 HOH A 8 408 103 HOH HOH . C 3 HOH A 9 409 175 HOH HOH . C 3 HOH A 10 410 126 HOH HOH . C 3 HOH A 11 411 311 HOH HOH . C 3 HOH A 12 412 229 HOH HOH . C 3 HOH A 13 413 97 HOH HOH . C 3 HOH A 14 414 132 HOH HOH . C 3 HOH A 15 415 195 HOH HOH . C 3 HOH A 16 416 164 HOH HOH . C 3 HOH A 17 417 131 HOH HOH . C 3 HOH A 18 418 194 HOH HOH . C 3 HOH A 19 419 187 HOH HOH . C 3 HOH A 20 420 94 HOH HOH . C 3 HOH A 21 421 291 HOH HOH . C 3 HOH A 22 422 157 HOH HOH . C 3 HOH A 23 423 256 HOH HOH . C 3 HOH A 24 424 26 HOH HOH . C 3 HOH A 25 425 160 HOH HOH . C 3 HOH A 26 426 57 HOH HOH . C 3 HOH A 27 427 71 HOH HOH . C 3 HOH A 28 428 206 HOH HOH . C 3 HOH A 29 429 72 HOH HOH . C 3 HOH A 30 430 90 HOH HOH . C 3 HOH A 31 431 93 HOH HOH . C 3 HOH A 32 432 47 HOH HOH . C 3 HOH A 33 433 36 HOH HOH . C 3 HOH A 34 434 49 HOH HOH . C 3 HOH A 35 435 152 HOH HOH . C 3 HOH A 36 436 250 HOH HOH . C 3 HOH A 37 437 53 HOH HOH . C 3 HOH A 38 438 246 HOH HOH . C 3 HOH A 39 439 147 HOH HOH . C 3 HOH A 40 440 55 HOH HOH . C 3 HOH A 41 441 154 HOH HOH . C 3 HOH A 42 442 247 HOH HOH . C 3 HOH A 43 443 41 HOH HOH . C 3 HOH A 44 444 7 HOH HOH . C 3 HOH A 45 445 217 HOH HOH . C 3 HOH A 46 446 15 HOH HOH . C 3 HOH A 47 447 34 HOH HOH . C 3 HOH A 48 448 114 HOH HOH . C 3 HOH A 49 449 370 HOH HOH . C 3 HOH A 50 450 140 HOH HOH . C 3 HOH A 51 451 142 HOH HOH . C 3 HOH A 52 452 12 HOH HOH . C 3 HOH A 53 453 119 HOH HOH . C 3 HOH A 54 454 153 HOH HOH . C 3 HOH A 55 455 89 HOH HOH . C 3 HOH A 56 456 214 HOH HOH . C 3 HOH A 57 457 121 HOH HOH . C 3 HOH A 58 458 301 HOH HOH . C 3 HOH A 59 459 117 HOH HOH . C 3 HOH A 60 460 67 HOH HOH . C 3 HOH A 61 461 151 HOH HOH . C 3 HOH A 62 462 249 HOH HOH . C 3 HOH A 63 463 45 HOH HOH . C 3 HOH A 64 464 231 HOH HOH . C 3 HOH A 65 465 31 HOH HOH . C 3 HOH A 66 466 14 HOH HOH . C 3 HOH A 67 467 10 HOH HOH . C 3 HOH A 68 468 43 HOH HOH . C 3 HOH A 69 469 61 HOH HOH . C 3 HOH A 70 470 141 HOH HOH . C 3 HOH A 71 471 155 HOH HOH . C 3 HOH A 72 472 1 HOH HOH . C 3 HOH A 73 473 77 HOH HOH . C 3 HOH A 74 474 58 HOH HOH . C 3 HOH A 75 475 145 HOH HOH . C 3 HOH A 76 476 23 HOH HOH . C 3 HOH A 77 477 17 HOH HOH . C 3 HOH A 78 478 168 HOH HOH . C 3 HOH A 79 479 32 HOH HOH . C 3 HOH A 80 480 96 HOH HOH . C 3 HOH A 81 481 294 HOH HOH . C 3 HOH A 82 482 150 HOH HOH . C 3 HOH A 83 483 78 HOH HOH . C 3 HOH A 84 484 88 HOH HOH . C 3 HOH A 85 485 13 HOH HOH . C 3 HOH A 86 486 109 HOH HOH . C 3 HOH A 87 487 169 HOH HOH . C 3 HOH A 88 488 244 HOH HOH . C 3 HOH A 89 489 44 HOH HOH . C 3 HOH A 90 490 4 HOH HOH . C 3 HOH A 91 491 33 HOH HOH . C 3 HOH A 92 492 9 HOH HOH . C 3 HOH A 93 493 186 HOH HOH . C 3 HOH A 94 494 101 HOH HOH . C 3 HOH A 95 495 171 HOH HOH . C 3 HOH A 96 496 60 HOH HOH . C 3 HOH A 97 497 68 HOH HOH . C 3 HOH A 98 498 2 HOH HOH . C 3 HOH A 99 499 83 HOH HOH . C 3 HOH A 100 500 20 HOH HOH . C 3 HOH A 101 501 40 HOH HOH . C 3 HOH A 102 502 100 HOH HOH . C 3 HOH A 103 503 66 HOH HOH . C 3 HOH A 104 504 298 HOH HOH . C 3 HOH A 105 505 27 HOH HOH . C 3 HOH A 106 506 178 HOH HOH . C 3 HOH A 107 507 102 HOH HOH . C 3 HOH A 108 508 146 HOH HOH . C 3 HOH A 109 509 79 HOH HOH . C 3 HOH A 110 510 39 HOH HOH . C 3 HOH A 111 511 134 HOH HOH . C 3 HOH A 112 512 99 HOH HOH . C 3 HOH A 113 513 204 HOH HOH . C 3 HOH A 114 514 19 HOH HOH . C 3 HOH A 115 515 18 HOH HOH . C 3 HOH A 116 516 46 HOH HOH . C 3 HOH A 117 517 29 HOH HOH . C 3 HOH A 118 518 62 HOH HOH . C 3 HOH A 119 519 165 HOH HOH . C 3 HOH A 120 520 80 HOH HOH . C 3 HOH A 121 521 22 HOH HOH . C 3 HOH A 122 522 106 HOH HOH . C 3 HOH A 123 523 180 HOH HOH . C 3 HOH A 124 524 76 HOH HOH . C 3 HOH A 125 525 51 HOH HOH . C 3 HOH A 126 526 56 HOH HOH . C 3 HOH A 127 527 228 HOH HOH . C 3 HOH A 128 528 6 HOH HOH . C 3 HOH A 129 529 125 HOH HOH . C 3 HOH A 130 530 144 HOH HOH . C 3 HOH A 131 531 25 HOH HOH . C 3 HOH A 132 532 108 HOH HOH . C 3 HOH A 133 533 156 HOH HOH . C 3 HOH A 134 534 38 HOH HOH . C 3 HOH A 135 535 176 HOH HOH . C 3 HOH A 136 536 181 HOH HOH . C 3 HOH A 137 537 170 HOH HOH . C 3 HOH A 138 538 98 HOH HOH . C 3 HOH A 139 539 37 HOH HOH . C 3 HOH A 140 540 48 HOH HOH . C 3 HOH A 141 541 183 HOH HOH . C 3 HOH A 142 542 21 HOH HOH . C 3 HOH A 143 543 63 HOH HOH . C 3 HOH A 144 544 303 HOH HOH . C 3 HOH A 145 545 87 HOH HOH . C 3 HOH A 146 546 197 HOH HOH . C 3 HOH A 147 547 254 HOH HOH . C 3 HOH A 148 548 133 HOH HOH . C 3 HOH A 149 549 16 HOH HOH . C 3 HOH A 150 550 95 HOH HOH . C 3 HOH A 151 551 65 HOH HOH . C 3 HOH A 152 552 230 HOH HOH . C 3 HOH A 153 553 52 HOH HOH . C 3 HOH A 154 554 135 HOH HOH . C 3 HOH A 155 555 30 HOH HOH . C 3 HOH A 156 556 158 HOH HOH . C 3 HOH A 157 557 28 HOH HOH . C 3 HOH A 158 558 251 HOH HOH . C 3 HOH A 159 559 104 HOH HOH . C 3 HOH A 160 560 224 HOH HOH . C 3 HOH A 161 561 167 HOH HOH . C 3 HOH A 162 562 227 HOH HOH . C 3 HOH A 163 563 190 HOH HOH . C 3 HOH A 164 564 111 HOH HOH . C 3 HOH A 165 565 110 HOH HOH . C 3 HOH A 166 566 207 HOH HOH . C 3 HOH A 167 567 242 HOH HOH . C 3 HOH A 168 568 74 HOH HOH . C 3 HOH A 169 570 42 HOH HOH . C 3 HOH A 170 571 128 HOH HOH . C 3 HOH A 171 572 210 HOH HOH . C 3 HOH A 172 573 123 HOH HOH . C 3 HOH A 173 574 174 HOH HOH . C 3 HOH A 174 575 3 HOH HOH . C 3 HOH A 175 576 236 HOH HOH . C 3 HOH A 176 577 92 HOH HOH . C 3 HOH A 177 578 307 HOH HOH . C 3 HOH A 178 579 240 HOH HOH . C 3 HOH A 179 580 91 HOH HOH . C 3 HOH A 180 581 212 HOH HOH . C 3 HOH A 181 582 252 HOH HOH . C 3 HOH A 182 583 209 HOH HOH . C 3 HOH A 183 584 296 HOH HOH . C 3 HOH A 184 585 198 HOH HOH . C 3 HOH A 185 586 163 HOH HOH . C 3 HOH A 186 587 105 HOH HOH . C 3 HOH A 187 588 173 HOH HOH . C 3 HOH A 188 589 202 HOH HOH . C 3 HOH A 189 590 185 HOH HOH . C 3 HOH A 190 591 290 HOH HOH . C 3 HOH A 191 592 238 HOH HOH . C 3 HOH A 192 593 162 HOH HOH . C 3 HOH A 193 594 257 HOH HOH . C 3 HOH A 194 595 122 HOH HOH . C 3 HOH A 195 596 233 HOH HOH . C 3 HOH A 196 598 309 HOH HOH . C 3 HOH A 197 599 159 HOH HOH . C 3 HOH A 198 600 177 HOH HOH . C 3 HOH A 199 601 184 HOH HOH . C 3 HOH A 200 602 235 HOH HOH . C 3 HOH A 201 603 302 HOH HOH . C 3 HOH A 202 604 161 HOH HOH . C 3 HOH A 203 605 241 HOH HOH . C 3 HOH A 204 606 215 HOH HOH . C 3 HOH A 205 607 192 HOH HOH . C 3 HOH A 206 608 226 HOH HOH . C 3 HOH A 207 609 245 HOH HOH . C 3 HOH A 208 610 203 HOH HOH . C 3 HOH A 209 611 112 HOH HOH . C 3 HOH A 210 612 81 HOH HOH . C 3 HOH A 211 613 196 HOH HOH . C 3 HOH A 212 614 107 HOH HOH . C 3 HOH A 213 615 120 HOH HOH . C 3 HOH A 214 616 116 HOH HOH . C 3 HOH A 215 617 70 HOH HOH . C 3 HOH A 216 618 218 HOH HOH . C 3 HOH A 217 619 248 HOH HOH . C 3 HOH A 218 620 24 HOH HOH . C 3 HOH A 219 621 293 HOH HOH . C 3 HOH A 220 622 200 HOH HOH . C 3 HOH A 221 624 136 HOH HOH . C 3 HOH A 222 625 201 HOH HOH . C 3 HOH A 223 626 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 30.041 -17.935 -3.547 1 13.99 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 31.14 -18.214 -2.586 1 12.23 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 31.529 -19.696 -2.588 1 12.66 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 31.988 -20.231 -3.951 1 12.54 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 32.599 -21.978 -3.853 1 12.09 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 32.361 -17.351 -2.936 1 12.19 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 33.294 -17.441 -2.209 1 13.74 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 32.296 -16.683 -3.908 1 13.71 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 31.191 -22.895 -4.528 1 13.7 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 30.073 -23.061 -3.533 1 11.96 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 28.972 -23.674 -4.23 1 13.03 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 30.398 -23.996 -2.375 1 12.02 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 30.069 -23.363 -1.15 1 12.98 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 29.564 -25.243 -2.667 1 12.54 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 29.189 -25.956 -1.518 1 13.76 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 28.384 -24.629 -3.388 1 11.83 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 27.606 -25.557 -4.188 1 12.45 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 28.049 -26.444 -5.127 1 12.81 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 27.088 -27.099 -5.709 1 13.69 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 25.937 -26.629 -5.116 1 12.22 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 24.587 -26.943 -5.292 1 14.73 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 24.136 -27.826 -6.166 1 15.68 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 23.701 -26.269 -4.533 1 13.91 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 24.149 -25.396 -3.638 1 12.57 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 25.389 -25.014 -3.397 1 13.83 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 26.246 -25.683 -4.173 1 12.14 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #