data_7X0S
#
_model_server_result.job_id            Wej-TjTQ9FwuP6A2h_SsrQ 
_model_server_result.datetime_utc      '2024-11-09 02:00:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7x0s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KB","auth_seq_id":601}' 
#
_entry.id    7X0S 
#
_exptl.entry_id    7X0S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptadecameric 
_pdbx_struct_assembly.oligomeric_count      17 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 R N N 
? 10 U N N 
? 10 X N N 
? 10 AA N N 
? 10 DA N N 
? 10 GA N N 
? 10 JA N N 
? 10 MA N N 
? 10 PA N N 
? 10 SA N N 
? 10 XA N N 
? 10 YA N N 
? 10 BB N N 
? 10 EB N N 
? 10 HB N N 
? 10 KB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 R O2A ADP . K ADP 601 1_555 S MG MG . K MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc2 R O3A ADP . K ADP 601 1_555 S MG MG . K MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc3 B OG SER 170 J SER 170 1_555 V MG MG . J MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc4 U O2A ADP . J ADP 601 1_555 V MG MG . J MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc5 X O2A ADP . H ADP 601 1_555 Y MG MG . H MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc6 AA O2A ADP . G ADP 601 1_555 BA MG MG . G MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc7 E OG SER 173 E SER 173 1_555 EA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? 
metalc ? metalc8 DA O2A ADP . E ADP 601 1_555 EA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc9 GA O2A ADP . I ADP 601 1_555 HA MG MG . I MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc10 G OD1 ASP 97 B ASP 97 1_555 KA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc11 G OD2 ASP 97 B ASP 97 1_555 KA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc12 JA O2A ADP . B ADP 601 1_555 KA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc13 H OD2 ASP 88 A ASP 88 1_555 NA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc14 MA O2A ADP . A ADP 601 1_555 NA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc15 PA O1A ADP . z ADP 601 1_555 QA MG MG . z MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc16 PA O3A ADP . z ADP 601 1_555 QA MG MG . z MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc17 K OG SER 170 P SER 170 1_555 TA MG MG . P MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
metalc ? metalc18 SA O1A ADP . P ADP 601 1_555 TA MG MG . P MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc19 L OD2 ASP 92 O ASP 92 1_555 VA MG MG . O MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc20 VA MG MG . O MG 601 1_555 XA O1B ADP . O ADP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? 
metalc ? metalc21 VA MG MG . O MG 601 1_555 XA O1A ADP . O ADP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
metalc ? metalc22 M OD1 ASP 93 N ASP 93 1_555 ZA MG MG . N MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc23 YA O1A ADP . N ADP 601 1_555 ZA MG MG . N MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc24 BB O1A ADP . e ADP 601 1_555 CB MG MG . e MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc25 EB O1A ADP . a ADP 601 1_555 FB MG MG . a MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc26 P OD1 ASP 104 M ASP 104 1_555 IB MG MG . M MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc27 HB O1A ADP . M ADP 601 1_555 IB MG MG . M MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc28 Q OD1 ASP 97 L ASP 97 1_555 LB MG MG . L MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc29 Q OD2 ASP 97 L ASP 97 1_555 LB MG MG . L MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc30 KB O1A ADP . L ADP 601 1_555 LB MG MG . L MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7X0S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
R 10 ADP K 1 601 601 ADP ADP . 
S 11 MG K 1 602 602 MG MG . 
T 12 AF3 K 1 603 603 AF3 AF3 . 
U 10 ADP J 1 601 601 ADP ADP . 
V 11 MG J 1 602 602 MG MG . 
W 12 AF3 J 1 603 603 AF3 AF3 . 
X 10 ADP H 1 601 601 ADP ADP . 
Y 11 MG H 1 602 602 MG MG . 
Z 12 AF3 H 1 603 603 AF3 AF3 . 
AA 10 ADP G 1 601 601 ADP ADP . 
BA 11 MG G 1 602 602 MG MG . 
CA 12 AF3 G 1 603 603 AF3 AF3 . 
DA 10 ADP E 1 601 601 ADP ADP . 
EA 11 MG E 1 602 602 MG MG . 
FA 12 AF3 E 1 603 603 AF3 AF3 . 
GA 10 ADP I 1 601 601 ADP ADP . 
HA 11 MG I 1 602 602 MG MG . 
IA 12 AF3 I 1 603 603 AF3 AF3 . 
JA 10 ADP B 1 601 601 ADP ADP . 
KA 11 MG B 1 602 602 MG MG . 
LA 12 AF3 B 1 603 603 AF3 AF3 . 
MA 10 ADP A 1 601 601 ADP ADP . 
NA 11 MG A 1 602 602 MG MG . 
OA 12 AF3 A 1 603 603 AF3 AF3 . 
PA 10 ADP z 1 601 601 ADP ADP . 
QA 11 MG z 1 602 602 MG MG . 
RA 12 AF3 z 1 603 603 AF3 AF3 . 
SA 10 ADP P 1 601 601 ADP ADP . 
TA 11 MG P 1 602 602 MG MG . 
UA 12 AF3 P 1 603 603 AF3 AF3 . 
VA 11 MG O 1 601 602 MG MG . 
WA 12 AF3 O 1 602 603 AF3 AF3 . 
XA 10 ADP O 1 603 601 ADP ADP . 
YA 10 ADP N 1 601 601 ADP ADP . 
ZA 11 MG N 1 602 602 MG MG . 
AB 12 AF3 N 1 603 603 AF3 AF3 . 
BB 10 ADP e 1 601 601 ADP ADP . 
CB 11 MG e 1 602 602 MG MG . 
DB 12 AF3 e 1 603 603 AF3 AF3 . 
EB 10 ADP a 1 601 601 ADP ADP . 
FB 11 MG a 1 602 602 MG MG . 
GB 12 AF3 a 1 603 603 AF3 AF3 . 
HB 10 ADP M 1 601 601 ADP ADP . 
IB 11 MG M 1 602 602 MG MG . 
JB 12 AF3 M 1 603 603 AF3 AF3 . 
KB 10 ADP L 1 601 601 ADP ADP . 
LB 11 MG L 1 602 602 MG MG . 
MB 12 AF3 L 1 603 603 AF3 AF3 . 
NB 13 HOH K 1 701 701 HOH HOH . 
OB 13 HOH J 1 701 701 HOH HOH . 
PB 13 HOH H 1 701 701 HOH HOH . 
QB 13 HOH G 1 701 701 HOH HOH . 
RB 13 HOH E 1 701 701 HOH HOH . 
SB 13 HOH I 1 701 701 HOH HOH . 
TB 13 HOH B 1 701 701 HOH HOH . 
UB 13 HOH A 1 701 701 HOH HOH . 
VB 13 HOH z 1 701 701 HOH HOH . 
WB 13 HOH P 1 701 701 HOH HOH . 
XB 13 HOH O 1 701 701 HOH HOH . 
YB 13 HOH N 1 701 701 HOH HOH . 
ZB 13 HOH e 1 701 701 HOH HOH . 
AC 13 HOH a 1 701 701 HOH HOH . 
BC 13 HOH M 1 701 701 HOH HOH . 
CC 13 HOH L 1 701 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . KB 10 118.208 175.158 141.726 1 5 ? PB ADP 601 L 1 
HETATM 2 O O1B ADP . . . KB 10 118.065 175.955 140.452 1 5 ? O1B ADP 601 L 1 
HETATM 3 O O2B ADP . . . KB 10 119.41 175.525 142.561 1 5 ? O2B ADP 601 L 1 
HETATM 4 O O3B ADP . . . KB 10 117.992 173.672 141.559 1 5 ? O3B ADP 601 L 1 
HETATM 5 P PA ADP . . . KB 10 116.775 177.182 143.016 1 5 ? PA ADP 601 L 1 
HETATM 6 O O1A ADP . . . KB 10 116.758 178.003 141.751 1 5 ? O1A ADP 601 L 1 
HETATM 7 O O2A ADP . . . KB 10 117.751 177.513 144.118 1 5 ? O2A ADP 601 L 1 
HETATM 8 O O3A ADP . . . KB 10 116.958 175.633 142.618 1 5 ? O3A ADP 601 L 1 
HETATM 9 O O5' ADP . . . KB 10 115.291 177.197 143.636 1 5 ? O5' ADP 601 L 1 
HETATM 10 C C5' ADP . . . KB 10 114.625 178.435 143.849 1 5 ? C5' ADP 601 L 1 
HETATM 11 C C4' ADP . . . KB 10 113.218 178.182 144.383 1 5 ? C4' ADP 601 L 1 
HETATM 12 O O4' ADP . . . KB 10 112.545 179.419 144.628 1 5 ? O4' ADP 601 L 1 
HETATM 13 C C3' ADP . . . KB 10 112.357 177.395 143.407 1 5 ? C3' ADP 601 L 1 
HETATM 14 O O3' ADP . . . KB 10 112.153 176.059 143.879 1 5 ? O3' ADP 601 L 1 
HETATM 15 C C2' ADP . . . KB 10 111.039 178.138 143.317 1 5 ? C2' ADP 601 L 1 
HETATM 16 O O2' ADP . . . KB 10 109.947 177.293 143.688 1 5 ? O2' ADP 601 L 1 
HETATM 17 C C1' ADP . . . KB 10 111.165 179.313 144.272 1 5 ? C1' ADP 601 L 1 
HETATM 18 N N9 ADP . . . KB 10 110.696 180.566 143.633 1 5 ? N9 ADP 601 L 1 
HETATM 19 C C8 ADP . . . KB 10 111.39 181.3 142.742 1 5 ? C8 ADP 601 L 1 
HETATM 20 N N7 ADP . . . KB 10 110.675 182.386 142.355 1 5 ? N7 ADP 601 L 1 
HETATM 21 C C5 ADP . . . KB 10 109.5 182.355 143.007 1 5 ? C5 ADP 601 L 1 
HETATM 22 C C6 ADP . . . KB 10 108.285 183.198 143.061 1 5 ? C6 ADP 601 L 1 
HETATM 23 N N6 ADP . . . KB 10 108.184 184.325 142.315 1 5 ? N6 ADP 601 L 1 
HETATM 24 N N1 ADP . . . KB 10 107.284 182.805 143.876 1 5 ? N1 ADP 601 L 1 
HETATM 25 C C2 ADP . . . KB 10 107.365 181.69 144.624 1 5 ? C2 ADP 601 L 1 
HETATM 26 N N3 ADP . . . KB 10 108.441 180.882 144.62 1 5 ? N3 ADP 601 L 1 
HETATM 27 C C4 ADP . . . KB 10 109.518 181.154 143.849 1 5 ? C4 ADP 601 L 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    97 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#