data_7X1O
#
_model_server_result.job_id            sbTtyiR9PKOfyA2d31gLzg 
_model_server_result.datetime_utc      '2024-11-08 21:17:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7x1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1907}' 
#
_entry.id    7X1O 
#
_exptl.entry_id    7X1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.62 
_cell.angle_gamma         90 
_cell.entry_id            7X1O 
_cell.length_a            72.03 
_cell.length_b            93.73 
_cell.length_c            87.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7X1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             I 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 294 A CYS 1301 1_555 G ZN ZN . A ZN 1905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc2 A OD1 ASN 349 A ASN 1356 1_555 Q CA CA . B CA 1907 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc3 A SG CYS 441 A CYS 1448 1_555 E ZN ZN . A ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc4 A SG CYS 446 A CYS 1453 1_555 E ZN ZN . A ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc5 A SG CYS 488 A CYS 1495 1_555 E ZN ZN . A ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc6 A SG CYS 490 A CYS 1497 1_555 E ZN ZN . A ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc7 H CA CA . A CA 1906 1_555 T O HOH . B HOH 2073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc8 J ZN ZN . A ZN 1908 1_555 B SG CYS 294 B CYS 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc9 B OE1 GLU 107 B GLU 1114 1_555 Q CA CA . B CA 1907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc10 B OE2 GLU 257 B GLU 1264 1_555 O CA CA . B CA 1905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc11 B SG CYS 370 B CYS 1377 1_555 R ZN ZN . B ZN 1908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
metalc ? metalc12 B SG CYS 441 B CYS 1448 1_555 M ZN ZN . B ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc13 B SG CYS 446 B CYS 1453 1_555 M ZN ZN . B ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc14 B SG CYS 488 B CYS 1495 1_555 M ZN ZN . B ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc15 B SG CYS 490 B CYS 1497 1_555 M ZN ZN . B ZN 1903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7X1O 
_atom_sites.fract_transf_matrix[1][1]    0.013883 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004949 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HFG A 1 1901 1901 HFG HFG . 
D 3 JE6 A 1 1902 1902 JE6 JE6 . 
E 4 ZN A 1 1903 1903 ZN ZN . 
F 5 BR A 1 1904 1904 BR BR . 
G 4 ZN A 1 1905 1905 ZN ZN . 
H 6 CA A 1 1906 1906 CA CA . 
I 7 GOL A 1 1907 1907 GOL GOL . 
J 4 ZN A 1 1908 1905 ZN ZN . 
K 2 HFG B 1 1901 1901 HFG HFG . 
L 3 JE6 B 1 1902 1902 JE6 JE6 . 
M 4 ZN B 1 1903 1903 ZN ZN . 
N 5 BR B 1 1904 1904 BR BR . 
O 6 CA B 1 1905 1906 CA CA . 
P 6 CA B 1 1906 1907 CA CA . 
Q 6 CA B 1 1907 1908 CA CA . 
R 4 ZN B 1 1908 1909 ZN ZN . 
S 8 HOH A 1 2001 119 HOH HOH . 
S 8 HOH A 2 2002 68 HOH HOH . 
S 8 HOH A 3 2003 24 HOH HOH . 
S 8 HOH A 4 2004 42 HOH HOH . 
S 8 HOH A 5 2005 165 HOH HOH . 
S 8 HOH A 6 2006 109 HOH HOH . 
S 8 HOH A 7 2007 146 HOH HOH . 
S 8 HOH A 8 2008 51 HOH HOH . 
S 8 HOH A 9 2009 50 HOH HOH . 
S 8 HOH A 10 2010 88 HOH HOH . 
S 8 HOH A 11 2011 33 HOH HOH . 
S 8 HOH A 12 2012 47 HOH HOH . 
S 8 HOH A 13 2013 124 HOH HOH . 
S 8 HOH A 14 2014 106 HOH HOH . 
S 8 HOH A 15 2015 32 HOH HOH . 
S 8 HOH A 16 2016 56 HOH HOH . 
S 8 HOH A 17 2017 49 HOH HOH . 
S 8 HOH A 18 2018 90 HOH HOH . 
S 8 HOH A 19 2019 26 HOH HOH . 
S 8 HOH A 20 2020 75 HOH HOH . 
S 8 HOH A 21 2021 15 HOH HOH . 
S 8 HOH A 22 2022 1 HOH HOH . 
S 8 HOH A 23 2023 143 HOH HOH . 
S 8 HOH A 24 2024 9 HOH HOH . 
S 8 HOH A 25 2025 70 HOH HOH . 
S 8 HOH A 26 2026 71 HOH HOH . 
S 8 HOH A 27 2027 174 HOH HOH . 
S 8 HOH A 28 2028 12 HOH HOH . 
S 8 HOH A 29 2029 78 HOH HOH . 
S 8 HOH A 30 2030 45 HOH HOH . 
S 8 HOH A 31 2031 57 HOH HOH . 
S 8 HOH A 32 2032 54 HOH HOH . 
S 8 HOH A 33 2033 85 HOH HOH . 
S 8 HOH A 34 2034 62 HOH HOH . 
S 8 HOH A 35 2035 96 HOH HOH . 
S 8 HOH A 36 2036 14 HOH HOH . 
S 8 HOH A 37 2037 164 HOH HOH . 
S 8 HOH A 38 2038 84 HOH HOH . 
S 8 HOH A 39 2039 171 HOH HOH . 
S 8 HOH A 40 2040 137 HOH HOH . 
S 8 HOH A 41 2041 81 HOH HOH . 
S 8 HOH A 42 2042 38 HOH HOH . 
S 8 HOH A 43 2043 31 HOH HOH . 
S 8 HOH A 44 2044 167 HOH HOH . 
S 8 HOH A 45 2045 34 HOH HOH . 
S 8 HOH A 46 2046 103 HOH HOH . 
S 8 HOH A 47 2047 66 HOH HOH . 
S 8 HOH A 48 2048 80 HOH HOH . 
S 8 HOH A 49 2049 10 HOH HOH . 
S 8 HOH A 50 2050 82 HOH HOH . 
S 8 HOH A 51 2051 52 HOH HOH . 
S 8 HOH A 52 2052 30 HOH HOH . 
S 8 HOH A 53 2053 94 HOH HOH . 
S 8 HOH A 54 2054 123 HOH HOH . 
S 8 HOH A 55 2055 8 HOH HOH . 
S 8 HOH A 56 2056 121 HOH HOH . 
S 8 HOH A 57 2057 133 HOH HOH . 
S 8 HOH A 58 2058 65 HOH HOH . 
S 8 HOH A 59 2059 178 HOH HOH . 
S 8 HOH A 60 2060 145 HOH HOH . 
S 8 HOH A 61 2061 180 HOH HOH . 
S 8 HOH A 62 2062 166 HOH HOH . 
S 8 HOH A 63 2063 46 HOH HOH . 
S 8 HOH A 64 2064 36 HOH HOH . 
S 8 HOH A 65 2065 93 HOH HOH . 
S 8 HOH A 66 2066 87 HOH HOH . 
S 8 HOH A 67 2067 131 HOH HOH . 
S 8 HOH A 68 2068 105 HOH HOH . 
S 8 HOH A 69 2069 113 HOH HOH . 
S 8 HOH A 70 2070 150 HOH HOH . 
S 8 HOH A 71 2071 112 HOH HOH . 
S 8 HOH A 72 2072 95 HOH HOH . 
S 8 HOH A 73 2073 91 HOH HOH . 
S 8 HOH A 74 2074 59 HOH HOH . 
S 8 HOH A 75 2075 111 HOH HOH . 
S 8 HOH A 76 2076 142 HOH HOH . 
S 8 HOH A 77 2077 182 HOH HOH . 
S 8 HOH A 78 2078 102 HOH HOH . 
T 8 HOH B 1 2001 110 HOH HOH . 
T 8 HOH B 2 2002 43 HOH HOH . 
T 8 HOH B 3 2003 117 HOH HOH . 
T 8 HOH B 4 2004 28 HOH HOH . 
T 8 HOH B 5 2005 107 HOH HOH . 
T 8 HOH B 6 2006 115 HOH HOH . 
T 8 HOH B 7 2007 13 HOH HOH . 
T 8 HOH B 8 2008 125 HOH HOH . 
T 8 HOH B 9 2009 116 HOH HOH . 
T 8 HOH B 10 2010 40 HOH HOH . 
T 8 HOH B 11 2011 158 HOH HOH . 
T 8 HOH B 12 2012 35 HOH HOH . 
T 8 HOH B 13 2013 25 HOH HOH . 
T 8 HOH B 14 2014 64 HOH HOH . 
T 8 HOH B 15 2015 176 HOH HOH . 
T 8 HOH B 16 2016 27 HOH HOH . 
T 8 HOH B 17 2017 163 HOH HOH . 
T 8 HOH B 18 2018 73 HOH HOH . 
T 8 HOH B 19 2019 89 HOH HOH . 
T 8 HOH B 20 2020 22 HOH HOH . 
T 8 HOH B 21 2021 17 HOH HOH . 
T 8 HOH B 22 2022 7 HOH HOH . 
T 8 HOH B 23 2023 18 HOH HOH . 
T 8 HOH B 24 2024 21 HOH HOH . 
T 8 HOH B 25 2025 108 HOH HOH . 
T 8 HOH B 26 2026 127 HOH HOH . 
T 8 HOH B 27 2027 159 HOH HOH . 
T 8 HOH B 28 2028 6 HOH HOH . 
T 8 HOH B 29 2029 11 HOH HOH . 
T 8 HOH B 30 2030 61 HOH HOH . 
T 8 HOH B 31 2031 177 HOH HOH . 
T 8 HOH B 32 2032 69 HOH HOH . 
T 8 HOH B 33 2033 147 HOH HOH . 
T 8 HOH B 34 2034 151 HOH HOH . 
T 8 HOH B 35 2035 168 HOH HOH . 
T 8 HOH B 36 2036 2 HOH HOH . 
T 8 HOH B 37 2037 16 HOH HOH . 
T 8 HOH B 38 2038 86 HOH HOH . 
T 8 HOH B 39 2039 77 HOH HOH . 
T 8 HOH B 40 2040 157 HOH HOH . 
T 8 HOH B 41 2041 20 HOH HOH . 
T 8 HOH B 42 2042 148 HOH HOH . 
T 8 HOH B 43 2043 39 HOH HOH . 
T 8 HOH B 44 2044 101 HOH HOH . 
T 8 HOH B 45 2045 72 HOH HOH . 
T 8 HOH B 46 2046 19 HOH HOH . 
T 8 HOH B 47 2047 129 HOH HOH . 
T 8 HOH B 48 2048 172 HOH HOH . 
T 8 HOH B 49 2049 136 HOH HOH . 
T 8 HOH B 50 2050 29 HOH HOH . 
T 8 HOH B 51 2051 160 HOH HOH . 
T 8 HOH B 52 2052 44 HOH HOH . 
T 8 HOH B 53 2053 3 HOH HOH . 
T 8 HOH B 54 2054 76 HOH HOH . 
T 8 HOH B 55 2055 132 HOH HOH . 
T 8 HOH B 56 2056 170 HOH HOH . 
T 8 HOH B 57 2057 5 HOH HOH . 
T 8 HOH B 58 2058 55 HOH HOH . 
T 8 HOH B 59 2059 41 HOH HOH . 
T 8 HOH B 60 2060 67 HOH HOH . 
T 8 HOH B 61 2061 53 HOH HOH . 
T 8 HOH B 62 2062 83 HOH HOH . 
T 8 HOH B 63 2063 48 HOH HOH . 
T 8 HOH B 64 2064 79 HOH HOH . 
T 8 HOH B 65 2065 144 HOH HOH . 
T 8 HOH B 66 2066 4 HOH HOH . 
T 8 HOH B 67 2067 37 HOH HOH . 
T 8 HOH B 68 2068 128 HOH HOH . 
T 8 HOH B 69 2069 179 HOH HOH . 
T 8 HOH B 70 2070 120 HOH HOH . 
T 8 HOH B 71 2071 149 HOH HOH . 
T 8 HOH B 72 2072 58 HOH HOH . 
T 8 HOH B 73 2073 130 HOH HOH . 
T 8 HOH B 74 2074 100 HOH HOH . 
T 8 HOH B 75 2075 153 HOH HOH . 
T 8 HOH B 76 2076 152 HOH HOH . 
T 8 HOH B 77 2077 23 HOH HOH . 
T 8 HOH B 78 2078 104 HOH HOH . 
T 8 HOH B 79 2079 118 HOH HOH . 
T 8 HOH B 80 2080 97 HOH HOH . 
T 8 HOH B 81 2081 161 HOH HOH . 
T 8 HOH B 82 2082 154 HOH HOH . 
T 8 HOH B 83 2083 60 HOH HOH . 
T 8 HOH B 84 2084 162 HOH HOH . 
T 8 HOH B 85 2085 156 HOH HOH . 
T 8 HOH B 86 2086 140 HOH HOH . 
T 8 HOH B 87 2087 138 HOH HOH . 
T 8 HOH B 88 2088 134 HOH HOH . 
T 8 HOH B 89 2089 141 HOH HOH . 
T 8 HOH B 90 2090 98 HOH HOH . 
T 8 HOH B 91 2091 155 HOH HOH . 
T 8 HOH B 92 2092 181 HOH HOH . 
T 8 HOH B 93 2093 175 HOH HOH . 
T 8 HOH B 94 2094 63 HOH HOH . 
T 8 HOH B 95 2095 122 HOH HOH . 
T 8 HOH B 96 2096 99 HOH HOH . 
T 8 HOH B 97 2097 169 HOH HOH . 
T 8 HOH B 98 2098 173 HOH HOH . 
T 8 HOH B 99 2099 139 HOH HOH . 
T 8 HOH B 100 2100 135 HOH HOH . 
T 8 HOH B 101 2101 126 HOH HOH . 
T 8 HOH B 102 2102 74 HOH HOH . 
T 8 HOH B 103 2103 114 HOH HOH . 
T 8 HOH B 104 2104 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 7 13.664 19.198 20.478 0.99 76.47 ? C1 GOL 1907 A 1 
HETATM 2 O O1 GOL . . . I 7 14.578 19.341 19.386 0.99 83.66 ? O1 GOL 1907 A 1 
HETATM 3 C C2 GOL . . . I 7 12.937 17.864 20.361 0.99 84.34 ? C2 GOL 1907 A 1 
HETATM 4 O O2 GOL . . . I 7 11.94 17.771 21.385 0.99 82.51 ? O2 GOL 1907 A 1 
HETATM 5 C C3 GOL . . . I 7 12.272 17.766 18.993 0.99 78.69 ? C3 GOL 1907 A 1 
HETATM 6 O O3 GOL . . . I 7 11.271 18.784 18.875 0.99 69.46 ? O3 GOL 1907 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           470 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#