data_7X24 # _model_server_result.job_id KPIGp8Ix6S-qTFO-WoQmRg _model_server_result.datetime_utc '2024-10-15 15:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x24 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 7X24 # _exptl.entry_id 7X24 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7X24 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X24 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 146 B CYS 126 1_555 B SG CYS 169 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 179 B CYS 159 1_555 B SG CYS 195 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 234 B CYS 214 1_555 B SG CYS 297 B CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B ND2 ASN 178 B ASN 158 1_555 O C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? metalc ? metalc1 A O ALA 292 A ALA 342 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc2 A O VAL 294 A VAL 344 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.067 ? metalc ? metalc3 A OD2 ASP 338 A ASP 388 1_555 N MG MG . A MG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 A O THR 340 A THR 390 1_555 N MG MG . A MG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 A OD1 ASP 679 A ASP 729 1_555 N MG MG . A MG 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc6 A O LYS 688 A LYS 738 1_555 E K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc7 A O ALA 690 A ALA 740 1_555 E K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc8 A OD1 ASP 709 A ASP 759 1_555 E K K . A K 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc9 A O THR 741 A THR 791 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc10 A OG SER 744 A SER 794 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc11 A OD1 ASN 745 A ASN 795 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? metalc ? metalc12 A OD1 ASN 745 A ASN 795 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc13 A OE1 GLU 748 A GLU 798 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc14 A OD1 ASP 773 A ASP 823 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc15 A OD2 ASP 773 A ASP 823 1_555 C K K . A K 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc16 A OD1 ASP 773 A ASP 823 1_555 D K K . A K 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7X24 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K A 1 1101 1 K K . D 3 K A 1 1102 2 K K . E 3 K A 1 1103 3 K K . F 4 PCW A 1 1104 2 PCW PCW . G 5 CLR A 1 1105 3 CLR CLR . H 4 PCW A 1 1106 4 PCW PCW . I 5 CLR A 1 1107 5 CLR CLR . J 4 PCW A 1 1108 6 PCW PCW . K 4 PCW A 1 1109 7 PCW PCW . L 4 PCW A 1 1110 8 PCW PCW . M 6 ALF A 1 1111 10 ALF ALF . N 7 MG A 1 1112 11 MG MG . O 8 NAG B 1 401 306 NAG NAG . P 5 CLR B 1 402 1 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 8 110.443 94.86 40.246 1 91.14 ? C1 NAG 401 B 1 HETATM 2 C C2 NAG . . . O 8 109.819 94.82 38.844 1 91.14 ? C2 NAG 401 B 1 HETATM 3 C C3 NAG . . . O 8 109.709 93.416 38.261 1 91.14 ? C3 NAG 401 B 1 HETATM 4 C C4 NAG . . . O 8 111.043 92.702 38.377 1 91.14 ? C4 NAG 401 B 1 HETATM 5 C C5 NAG . . . O 8 111.464 92.713 39.836 1 91.14 ? C5 NAG 401 B 1 HETATM 6 C C6 NAG . . . O 8 112.762 91.941 40.035 1 91.14 ? C6 NAG 401 B 1 HETATM 7 C C7 NAG . . . O 8 108.234 96.505 38.106 1 91.14 ? C7 NAG 401 B 1 HETATM 8 C C8 NAG . . . O 8 107.065 96.364 37.178 1 91.14 ? C8 NAG 401 B 1 HETATM 9 N N2 NAG . . . O 8 108.507 95.442 38.857 1 91.14 ? N2 NAG 401 B 1 HETATM 10 O O3 NAG . . . O 8 109.342 93.502 36.879 1 91.14 ? O3 NAG 401 B 1 HETATM 11 O O4 NAG . . . O 8 110.922 91.356 37.907 1 91.14 ? O4 NAG 401 B 1 HETATM 12 O O5 NAG . . . O 8 111.639 94.065 40.255 1 91.14 ? O5 NAG 401 B 1 HETATM 13 O O6 NAG . . . O 8 112.629 90.631 39.472 1 91.14 ? O6 NAG 401 B 1 HETATM 14 O O7 NAG . . . O 8 108.895 97.528 38.166 1 91.14 ? O7 NAG 401 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #