data_7X2D
#
_model_server_result.job_id            rW5ktARQ2CwoJTj3S1uiTw 
_model_server_result.datetime_utc      '2025-04-28 00:19:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7x2d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":502}' 
#
_entry.id    7X2D 
#
_exptl.entry_id    7X2D 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              391.344 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,5-dimethyl-6-[2-methyl-4-[3-(trifluoromethyl)pyridin-2-yl]oxy-phenyl]pyrimidine-2,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7X2D 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7X2D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 123 F CYS 96 1_555 A SG CYS 213 F CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf2 E SG CYS 44 E CYS 22 1_555 E SG CYS 118 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 E SG CYS 121 E CYS 99 1_555 E SG CYS 129 E CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C19 H16 F3 N3 O3' 
_chem_comp.formula_weight    391.344 
_chem_comp.id                86W 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,5-dimethyl-6-[2-methyl-4-[3-(trifluoromethyl)pyridin-2-yl]oxy-phenyl]pyrimidine-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Tavapadon 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O25 C24 86W doub 1 n n 
C24 N23 86W sing 2 n n 
C24 N26 86W sing 3 n n 
N23 C21 86W sing 4 n n 
C27 N26 86W sing 5 n n 
N26 C19 86W sing 6 n n 
C21 O22 86W doub 7 n n 
C21 C20 86W sing 8 n n 
C19 C20 86W doub 9 n n 
C19 C03 86W sing 10 n n 
C01 C02 86W sing 11 n n 
C20 C28 86W sing 12 n n 
C03 C02 86W doub 13 n y 
C03 C04 86W sing 14 n y 
C02 C07 86W sing 15 n y 
C07 C06 86W doub 16 n y 
C04 C05 86W doub 17 n y 
C05 C06 86W sing 18 n y 
C06 O08 86W sing 19 n n 
O08 C09 86W sing 20 n n 
F16 C15 86W sing 21 n n 
F18 C15 86W sing 22 n n 
C15 F17 86W sing 23 n n 
C15 C10 86W sing 24 n n 
C09 N14 86W doub 25 n y 
C09 C10 86W sing 26 n y 
N14 C13 86W sing 27 n y 
C10 C11 86W doub 28 n y 
C13 C12 86W doub 29 n y 
C11 C12 86W sing 30 n y 
C13 H1 86W sing 31 n n 
C28 H2 86W sing 32 n n 
C28 H3 86W sing 33 n n 
C28 H4 86W sing 34 n n 
C01 H5 86W sing 35 n n 
C01 H6 86W sing 36 n n 
C01 H7 86W sing 37 n n 
C04 H8 86W sing 38 n n 
C05 H9 86W sing 39 n n 
C07 H10 86W sing 40 n n 
C11 H11 86W sing 41 n n 
C12 H12 86W sing 42 n n 
C27 H13 86W sing 43 n n 
C27 H14 86W sing 44 n n 
C27 H15 86W sing 45 n n 
N23 H16 86W sing 46 n n 
#
_atom_sites.entry_id                     7X2D 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 CLR F 1 501 401 CLR CLR . 
G 7 86W F 1 502 501 86W LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 86W . . . G 7 99.596 96.148 66.128 1 66.54 ? C10 86W 502 F 1 
HETATM 2 C C13 86W . . . G 7 97.456 97.127 67.323 1 66.54 ? C13 86W 502 F 1 
HETATM 3 C C15 86W . . . G 7 100.724 95.665 65.274 1 66.54 ? C15 86W 502 F 1 
HETATM 4 C C20 86W . . . G 7 94.055 100.047 61.07 1 66.54 ? C20 86W 502 F 1 
HETATM 5 C C21 86W . . . G 7 93.193 100.807 60.152 1 66.54 ? C21 86W 502 F 1 
HETATM 6 C C24 86W . . . G 7 95.085 101.043 58.533 1 66.54 ? C24 86W 502 F 1 
HETATM 7 C C28 86W . . . G 7 93.464 99.55 62.376 1 66.54 ? C28 86W 502 F 1 
HETATM 8 C C01 86W . . . G 7 95.249 96.93 60.717 1 66.54 ? C01 86W 502 F 1 
HETATM 9 C C02 86W . . . G 7 96.245 97.621 61.632 1 66.54 ? C02 86W 502 F 1 
HETATM 10 C C03 86W . . . G 7 96.358 98.989 61.625 1 66.54 ? C03 86W 502 F 1 
HETATM 11 C C04 86W . . . G 7 97.269 99.596 62.446 1 66.54 ? C04 86W 502 F 1 
HETATM 12 C C05 86W . . . G 7 98.063 98.815 63.251 1 66.54 ? C05 86W 502 F 1 
HETATM 13 C C06 86W . . . G 7 97.942 97.445 63.267 1 66.54 ? C06 86W 502 F 1 
HETATM 14 C C07 86W . . . G 7 97.034 96.848 62.444 1 66.54 ? C07 86W 502 F 1 
HETATM 15 C C09 86W . . . G 7 98.566 96.672 65.421 1 66.54 ? C09 86W 502 F 1 
HETATM 16 C C11 86W . . . G 7 99.607 96.116 67.493 1 66.54 ? C11 86W 502 F 1 
HETATM 17 C C12 86W . . . G 7 98.481 96.622 68.097 1 66.54 ? C12 86W 502 F 1 
HETATM 18 C C19 86W . . . G 7 95.462 99.786 60.696 1 66.54 ? C19 86W 502 F 1 
HETATM 19 C C27 86W . . . G 7 97.32 100.067 58.993 1 66.54 ? C27 86W 502 F 1 
HETATM 20 F F16 86W . . . G 7 100.187 95.445 64.053 1 66.54 ? F16 86W 502 F 1 
HETATM 21 F F17 86W . . . G 7 101.342 94.575 65.777 1 66.54 ? F17 86W 502 F 1 
HETATM 22 F F18 86W . . . G 7 101.584 96.701 65.175 1 66.54 ? F18 86W 502 F 1 
HETATM 23 N N14 86W . . . G 7 97.511 97.143 66.014 1 66.54 ? N14 86W 502 F 1 
HETATM 24 N N23 86W . . . G 7 93.691 101.302 58.9 1 66.54 ? N23 86W 502 F 1 
HETATM 25 N N26 86W . . . G 7 95.961 100.281 59.43 1 66.54 ? N26 86W 502 F 1 
HETATM 26 O O08 86W . . . G 7 98.745 96.62 64.049 1 66.54 ? O08 86W 502 F 1 
HETATM 27 O O22 86W . . . G 7 92.084 100.996 60.456 1 66.54 ? O22 86W 502 F 1 
HETATM 28 O O25 86W . . . G 7 95.503 101.442 57.512 1 66.54 ? O25 86W 502 F 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#