data_7X2J
#
_model_server_result.job_id            pynQVwExE_iLuqygDUoezw 
_model_server_result.datetime_utc      '2024-11-21 09:12:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7x2j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    7X2J 
#
_exptl.entry_id    7X2J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7X2J 
_cell.length_a            108.413 
_cell.length_b            108.413 
_cell.length_c            94.119 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7X2J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 S CYS 323 1_555 A SG CYS 43 S CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 61 S CYS 366 1_555 A SG CYS 114 S CYS 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 73 S CYS 378 1_555 A SG CYS 206 S CYS 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf4 A SG CYS 162 S CYS 467 1_555 A SG CYS 169 S CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
covale ? covale1 A ND2 ASN 25 S ASN 330 1_555 C C1 NAG . S NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? 
covale ? covale2 A ND2 ASN 52 S ASN 357 1_555 D C1 NAG . S NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     7X2J 
_atom_sites.fract_transf_matrix[1][1]    0.009224 
_atom_sites.fract_transf_matrix[1][2]    0.005325 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010651 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010625 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG S 1 601 1 NAG NAG . 
D 3 NAG S 1 602 2 NAG NAG . 
E 4 HOH S 1 701 41 HOH HOH . 
E 4 HOH S 2 702 31 HOH HOH . 
E 4 HOH S 3 703 8 HOH HOH . 
E 4 HOH S 4 704 14 HOH HOH . 
E 4 HOH S 5 705 19 HOH HOH . 
E 4 HOH S 6 706 3 HOH HOH . 
E 4 HOH S 7 707 7 HOH HOH . 
E 4 HOH S 8 708 40 HOH HOH . 
E 4 HOH S 9 709 5 HOH HOH . 
E 4 HOH S 10 710 6 HOH HOH . 
E 4 HOH S 11 711 22 HOH HOH . 
E 4 HOH S 12 712 37 HOH HOH . 
E 4 HOH S 13 713 25 HOH HOH . 
E 4 HOH S 14 714 33 HOH HOH . 
E 4 HOH S 15 715 23 HOH HOH . 
E 4 HOH S 16 716 15 HOH HOH . 
E 4 HOH S 17 717 12 HOH HOH . 
E 4 HOH S 18 718 47 HOH HOH . 
E 4 HOH S 19 719 26 HOH HOH . 
E 4 HOH S 20 720 50 HOH HOH . 
E 4 HOH S 21 721 36 HOH HOH . 
E 4 HOH S 22 722 48 HOH HOH . 
E 4 HOH S 23 723 35 HOH HOH . 
E 4 HOH S 24 724 38 HOH HOH . 
F 4 HOH B 1 201 32 HOH HOH . 
F 4 HOH B 2 202 16 HOH HOH . 
F 4 HOH B 3 203 4 HOH HOH . 
F 4 HOH B 4 204 18 HOH HOH . 
F 4 HOH B 5 205 2 HOH HOH . 
F 4 HOH B 6 206 13 HOH HOH . 
F 4 HOH B 7 207 42 HOH HOH . 
F 4 HOH B 8 208 24 HOH HOH . 
F 4 HOH B 9 209 27 HOH HOH . 
F 4 HOH B 10 210 21 HOH HOH . 
F 4 HOH B 11 211 45 HOH HOH . 
F 4 HOH B 12 212 17 HOH HOH . 
F 4 HOH B 13 213 30 HOH HOH . 
F 4 HOH B 14 214 29 HOH HOH . 
F 4 HOH B 15 215 49 HOH HOH . 
F 4 HOH B 16 216 10 HOH HOH . 
F 4 HOH B 17 217 34 HOH HOH . 
F 4 HOH B 18 218 43 HOH HOH . 
F 4 HOH B 19 219 51 HOH HOH . 
F 4 HOH B 20 220 11 HOH HOH . 
F 4 HOH B 21 221 46 HOH HOH . 
F 4 HOH B 22 222 9 HOH HOH . 
F 4 HOH B 23 223 28 HOH HOH . 
F 4 HOH B 24 224 44 HOH HOH . 
F 4 HOH B 25 225 1 HOH HOH . 
F 4 HOH B 26 226 20 HOH HOH . 
F 4 HOH B 27 227 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -69.58 10.267 11.761 1 91.6 ? C1 NAG 601 S 1 
HETATM 2 C C2 NAG . . . C 3 -69.424 10.802 10.349 1 95.47 ? C2 NAG 601 S 1 
HETATM 3 C C3 NAG . . . C 3 -70.114 12.14 10.157 1 96.47 ? C3 NAG 601 S 1 
HETATM 4 C C4 NAG . . . C 3 -71.559 12.007 10.587 1 99.83 ? C4 NAG 601 S 1 
HETATM 5 C C5 NAG . . . C 3 -71.581 11.519 12.025 1 99.31 ? C5 NAG 601 S 1 
HETATM 6 C C6 NAG . . . C 3 -73.011 11.413 12.53 1 103.57 ? C6 NAG 601 S 1 
HETATM 7 C C7 NAG . . . C 3 -67.561 10.319 9.033 1 88.82 ? C7 NAG 601 S 1 
HETATM 8 C C8 NAG . . . C 3 -66.082 10.282 8.926 1 83.6 ? C8 NAG 601 S 1 
HETATM 9 N N2 NAG . . . C 3 -68.027 10.954 10.079 1 93.01 ? N2 NAG 601 S 1 
HETATM 10 O O3 NAG . . . C 3 -70.063 12.507 8.78 1 95.79 ? O3 NAG 601 S 1 
HETATM 11 O O4 NAG . . . C 3 -72.227 13.266 10.458 1 98.13 ? O4 NAG 601 S 1 
HETATM 12 O O5 NAG . . . C 3 -70.963 10.237 12.096 1 97.67 ? O5 NAG 601 S 1 
HETATM 13 O O6 NAG . . . C 3 -73.884 11.117 11.436 1 106.49 ? O6 NAG 601 S 1 
HETATM 14 O O7 NAG . . . C 3 -68.298 9.828 8.204 1 84.03 ? O7 NAG 601 S 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#