data_7X2K # _model_server_result.job_id joXrDKjD4kmv9alYvnpVTg _model_server_result.datetime_utc '2024-10-11 15:16:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7X2K # _exptl.entry_id 7X2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7X2K _cell.length_a 94.629 _cell.length_b 95.47 _cell.length_c 104.139 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 E CYS 336 1_555 A SG CYS 29 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 47 E CYS 379 1_555 A SG CYS 100 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 59 E CYS 391 1_555 A SG CYS 193 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf4 A SG CYS 148 E CYS 480 1_555 A SG CYS 156 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 B SG CYS 144 H CYS 144 1_555 B SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf7 C SG CYS 23 L CYS 23 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf8 C SG CYS 134 L CYS 134 1_555 C SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 D SG CYS 22 B CYS 22 1_555 D SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? covale ? covale1 A ND2 ASN 11 E ASN 343 1_555 E C1 NAG . E NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7X2K _atom_sites.fract_transf_matrix[1][1] 0.010568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG E 1 601 601 NAG NAG . F 6 HOH E 1 701 43 HOH HOH . F 6 HOH E 2 702 96 HOH HOH . F 6 HOH E 3 703 19 HOH HOH . F 6 HOH E 4 704 138 HOH HOH . F 6 HOH E 5 705 80 HOH HOH . F 6 HOH E 6 706 176 HOH HOH . F 6 HOH E 7 707 194 HOH HOH . F 6 HOH E 8 708 14 HOH HOH . F 6 HOH E 9 709 21 HOH HOH . F 6 HOH E 10 710 123 HOH HOH . F 6 HOH E 11 711 1 HOH HOH . F 6 HOH E 12 712 120 HOH HOH . F 6 HOH E 13 713 93 HOH HOH . F 6 HOH E 14 714 95 HOH HOH . F 6 HOH E 15 715 34 HOH HOH . F 6 HOH E 16 716 2 HOH HOH . F 6 HOH E 17 717 186 HOH HOH . F 6 HOH E 18 718 142 HOH HOH . F 6 HOH E 19 719 49 HOH HOH . F 6 HOH E 20 720 174 HOH HOH . F 6 HOH E 21 721 102 HOH HOH . F 6 HOH E 22 722 4 HOH HOH . F 6 HOH E 23 723 36 HOH HOH . F 6 HOH E 24 724 68 HOH HOH . F 6 HOH E 25 725 130 HOH HOH . F 6 HOH E 26 726 17 HOH HOH . F 6 HOH E 27 727 112 HOH HOH . F 6 HOH E 28 728 33 HOH HOH . F 6 HOH E 29 729 100 HOH HOH . F 6 HOH E 30 730 16 HOH HOH . F 6 HOH E 31 731 126 HOH HOH . F 6 HOH E 32 732 15 HOH HOH . F 6 HOH E 33 733 22 HOH HOH . F 6 HOH E 34 734 110 HOH HOH . F 6 HOH E 35 735 178 HOH HOH . F 6 HOH E 36 736 169 HOH HOH . F 6 HOH E 37 737 58 HOH HOH . F 6 HOH E 38 738 26 HOH HOH . F 6 HOH E 39 739 107 HOH HOH . F 6 HOH E 40 740 199 HOH HOH . F 6 HOH E 41 741 129 HOH HOH . F 6 HOH E 42 742 99 HOH HOH . F 6 HOH E 43 743 152 HOH HOH . F 6 HOH E 44 744 63 HOH HOH . F 6 HOH E 45 745 195 HOH HOH . F 6 HOH E 46 746 27 HOH HOH . F 6 HOH E 47 747 12 HOH HOH . F 6 HOH E 48 748 47 HOH HOH . F 6 HOH E 49 749 121 HOH HOH . F 6 HOH E 50 750 66 HOH HOH . F 6 HOH E 51 751 42 HOH HOH . F 6 HOH E 52 752 38 HOH HOH . F 6 HOH E 53 753 103 HOH HOH . F 6 HOH E 54 754 163 HOH HOH . F 6 HOH E 55 755 209 HOH HOH . F 6 HOH E 56 756 85 HOH HOH . F 6 HOH E 57 757 25 HOH HOH . F 6 HOH E 58 758 139 HOH HOH . F 6 HOH E 59 759 153 HOH HOH . F 6 HOH E 60 760 188 HOH HOH . F 6 HOH E 61 761 173 HOH HOH . F 6 HOH E 62 762 217 HOH HOH . F 6 HOH E 63 763 216 HOH HOH . F 6 HOH E 64 764 214 HOH HOH . F 6 HOH E 65 765 106 HOH HOH . F 6 HOH E 66 766 211 HOH HOH . G 6 HOH H 1 301 168 HOH HOH . G 6 HOH H 2 302 74 HOH HOH . G 6 HOH H 3 303 149 HOH HOH . G 6 HOH H 4 304 148 HOH HOH . G 6 HOH H 5 305 150 HOH HOH . G 6 HOH H 6 306 187 HOH HOH . G 6 HOH H 7 307 31 HOH HOH . G 6 HOH H 8 308 70 HOH HOH . G 6 HOH H 9 309 61 HOH HOH . G 6 HOH H 10 310 53 HOH HOH . G 6 HOH H 11 311 215 HOH HOH . G 6 HOH H 12 312 98 HOH HOH . G 6 HOH H 13 313 97 HOH HOH . G 6 HOH H 14 314 30 HOH HOH . G 6 HOH H 15 315 69 HOH HOH . G 6 HOH H 16 316 71 HOH HOH . G 6 HOH H 17 317 94 HOH HOH . G 6 HOH H 18 318 135 HOH HOH . G 6 HOH H 19 319 3 HOH HOH . G 6 HOH H 20 320 64 HOH HOH . G 6 HOH H 21 321 193 HOH HOH . G 6 HOH H 22 322 50 HOH HOH . G 6 HOH H 23 323 91 HOH HOH . G 6 HOH H 24 324 87 HOH HOH . G 6 HOH H 25 325 5 HOH HOH . G 6 HOH H 26 326 182 HOH HOH . G 6 HOH H 27 327 78 HOH HOH . G 6 HOH H 28 328 77 HOH HOH . G 6 HOH H 29 329 45 HOH HOH . G 6 HOH H 30 330 65 HOH HOH . G 6 HOH H 31 331 81 HOH HOH . G 6 HOH H 32 332 44 HOH HOH . G 6 HOH H 33 333 201 HOH HOH . G 6 HOH H 34 334 200 HOH HOH . G 6 HOH H 35 335 67 HOH HOH . G 6 HOH H 36 336 111 HOH HOH . G 6 HOH H 37 337 117 HOH HOH . G 6 HOH H 38 338 191 HOH HOH . G 6 HOH H 39 339 82 HOH HOH . G 6 HOH H 40 340 141 HOH HOH . G 6 HOH H 41 341 131 HOH HOH . G 6 HOH H 42 342 41 HOH HOH . G 6 HOH H 43 343 210 HOH HOH . G 6 HOH H 44 344 127 HOH HOH . G 6 HOH H 45 345 101 HOH HOH . G 6 HOH H 46 346 206 HOH HOH . G 6 HOH H 47 347 205 HOH HOH . G 6 HOH H 48 348 189 HOH HOH . G 6 HOH H 49 349 197 HOH HOH . G 6 HOH H 50 350 171 HOH HOH . G 6 HOH H 51 351 179 HOH HOH . G 6 HOH H 52 352 118 HOH HOH . G 6 HOH H 53 353 192 HOH HOH . G 6 HOH H 54 354 13 HOH HOH . G 6 HOH H 55 355 196 HOH HOH . G 6 HOH H 56 356 104 HOH HOH . G 6 HOH H 57 357 161 HOH HOH . G 6 HOH H 58 358 39 HOH HOH . G 6 HOH H 59 359 59 HOH HOH . G 6 HOH H 60 360 170 HOH HOH . G 6 HOH H 61 361 144 HOH HOH . G 6 HOH H 62 362 114 HOH HOH . G 6 HOH H 63 363 177 HOH HOH . G 6 HOH H 64 364 208 HOH HOH . H 6 HOH L 1 301 115 HOH HOH . H 6 HOH L 2 302 54 HOH HOH . H 6 HOH L 3 303 185 HOH HOH . H 6 HOH L 4 304 29 HOH HOH . H 6 HOH L 5 305 143 HOH HOH . H 6 HOH L 6 306 75 HOH HOH . H 6 HOH L 7 307 84 HOH HOH . H 6 HOH L 8 308 159 HOH HOH . H 6 HOH L 9 309 35 HOH HOH . H 6 HOH L 10 310 10 HOH HOH . H 6 HOH L 11 311 213 HOH HOH . H 6 HOH L 12 312 23 HOH HOH . H 6 HOH L 13 313 125 HOH HOH . H 6 HOH L 14 314 202 HOH HOH . H 6 HOH L 15 315 32 HOH HOH . H 6 HOH L 16 316 55 HOH HOH . H 6 HOH L 17 317 116 HOH HOH . H 6 HOH L 18 318 184 HOH HOH . H 6 HOH L 19 319 7 HOH HOH . H 6 HOH L 20 320 11 HOH HOH . H 6 HOH L 21 321 48 HOH HOH . H 6 HOH L 22 322 140 HOH HOH . H 6 HOH L 23 323 137 HOH HOH . H 6 HOH L 24 324 133 HOH HOH . H 6 HOH L 25 325 180 HOH HOH . H 6 HOH L 26 326 212 HOH HOH . H 6 HOH L 27 327 158 HOH HOH . H 6 HOH L 28 328 72 HOH HOH . H 6 HOH L 29 329 134 HOH HOH . H 6 HOH L 30 330 8 HOH HOH . H 6 HOH L 31 331 157 HOH HOH . H 6 HOH L 32 332 52 HOH HOH . H 6 HOH L 33 333 154 HOH HOH . H 6 HOH L 34 334 88 HOH HOH . H 6 HOH L 35 335 28 HOH HOH . H 6 HOH L 36 336 198 HOH HOH . H 6 HOH L 37 337 62 HOH HOH . H 6 HOH L 38 338 147 HOH HOH . H 6 HOH L 39 339 175 HOH HOH . H 6 HOH L 40 340 162 HOH HOH . H 6 HOH L 41 341 128 HOH HOH . H 6 HOH L 42 342 145 HOH HOH . H 6 HOH L 43 343 56 HOH HOH . H 6 HOH L 44 344 51 HOH HOH . H 6 HOH L 45 345 119 HOH HOH . H 6 HOH L 46 346 167 HOH HOH . H 6 HOH L 47 347 160 HOH HOH . H 6 HOH L 48 348 190 HOH HOH . H 6 HOH L 49 349 164 HOH HOH . H 6 HOH L 50 350 46 HOH HOH . H 6 HOH L 51 351 37 HOH HOH . H 6 HOH L 52 352 203 HOH HOH . H 6 HOH L 53 353 204 HOH HOH . H 6 HOH L 54 354 207 HOH HOH . H 6 HOH L 55 355 124 HOH HOH . H 6 HOH L 56 356 136 HOH HOH . I 6 HOH B 1 201 156 HOH HOH . I 6 HOH B 2 202 146 HOH HOH . I 6 HOH B 3 203 122 HOH HOH . I 6 HOH B 4 204 6 HOH HOH . I 6 HOH B 5 205 18 HOH HOH . I 6 HOH B 6 206 151 HOH HOH . I 6 HOH B 7 207 89 HOH HOH . I 6 HOH B 8 208 165 HOH HOH . I 6 HOH B 9 209 57 HOH HOH . I 6 HOH B 10 210 155 HOH HOH . I 6 HOH B 11 211 90 HOH HOH . I 6 HOH B 12 212 9 HOH HOH . I 6 HOH B 13 213 92 HOH HOH . I 6 HOH B 14 214 105 HOH HOH . I 6 HOH B 15 215 108 HOH HOH . I 6 HOH B 16 216 172 HOH HOH . I 6 HOH B 17 217 20 HOH HOH . I 6 HOH B 18 218 76 HOH HOH . I 6 HOH B 19 219 60 HOH HOH . I 6 HOH B 20 220 132 HOH HOH . I 6 HOH B 21 221 73 HOH HOH . I 6 HOH B 22 222 83 HOH HOH . I 6 HOH B 23 223 109 HOH HOH . I 6 HOH B 24 224 24 HOH HOH . I 6 HOH B 25 225 181 HOH HOH . I 6 HOH B 26 226 166 HOH HOH . I 6 HOH B 27 227 183 HOH HOH . I 6 HOH B 28 228 86 HOH HOH . I 6 HOH B 29 229 113 HOH HOH . I 6 HOH B 30 230 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 9.161 23.807 -42.519 1 49.66 ? C1 NAG 601 E 1 HETATM 2 C C2 NAG . . . E 5 9.017 25.275 -42.905 1 50.12 ? C2 NAG 601 E 1 HETATM 3 C C3 NAG . . . E 5 7.552 25.692 -42.851 1 53.83 ? C3 NAG 601 E 1 HETATM 4 C C4 NAG . . . E 5 6.7 24.749 -43.69 1 54.48 ? C4 NAG 601 E 1 HETATM 5 C C5 NAG . . . E 5 6.953 23.299 -43.288 1 54.59 ? C5 NAG 601 E 1 HETATM 6 C C6 NAG . . . E 5 6.239 22.305 -44.175 1 57.94 ? C6 NAG 601 E 1 HETATM 7 C C7 NAG . . . E 5 10.513 27.176 -42.487 1 48.37 ? C7 NAG 601 E 1 HETATM 8 C C8 NAG . . . E 5 11.29 27.939 -41.457 1 46.27 ? C8 NAG 601 E 1 HETATM 9 N N2 NAG . . . E 5 9.823 26.123 -42.04 1 49 ? N2 NAG 601 E 1 HETATM 10 O O3 NAG . . . E 5 7.422 27.025 -43.333 1 56.52 ? O3 NAG 601 E 1 HETATM 11 O O4 NAG . . . E 5 5.321 25.051 -43.509 1 56.38 ? O4 NAG 601 E 1 HETATM 12 O O5 NAG . . . E 5 8.354 23.003 -43.381 1 52.18 ? O5 NAG 601 E 1 HETATM 13 O O6 NAG . . . E 5 5.888 21.128 -43.461 1 57.94 ? O6 NAG 601 E 1 HETATM 14 O O7 NAG . . . E 5 10.511 27.5 -43.671 1 49.45 ? O7 NAG 601 E 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #