data_7X3M # _model_server_result.job_id qa51M65ZHnCwv3n-QpbDeA _model_server_result.datetime_utc '2024-11-01 11:20:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 7X3M # _exptl.entry_id 7X3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.36 _cell.angle_gamma 90 _cell.entry_id 7X3M _cell.length_a 49.066 _cell.length_b 105.335 _cell.length_c 75.436 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 275 n n PA O2A NAP sing 276 n n PA O5B NAP sing 277 n n PA O3 NAP sing 278 n n O2A HOA2 NAP sing 279 n n O5B C5B NAP sing 280 n n C5B C4B NAP sing 281 n n C5B H51A NAP sing 282 n n C5B H52A NAP sing 283 n n C4B O4B NAP sing 284 n n C4B C3B NAP sing 285 n n C4B H4B NAP sing 286 n n O4B C1B NAP sing 287 n n C3B O3B NAP sing 288 n n C3B C2B NAP sing 289 n n C3B H3B NAP sing 290 n n O3B HO3A NAP sing 291 n n C2B O2B NAP sing 292 n n C2B C1B NAP sing 293 n n C2B H2B NAP sing 294 n n O2B P2B NAP sing 295 n n C1B N9A NAP sing 296 n n C1B H1B NAP sing 297 n n N9A C8A NAP sing 298 n y N9A C4A NAP sing 299 n y C8A N7A NAP doub 300 n y C8A H8A NAP sing 301 n n N7A C5A NAP sing 302 n y C5A C6A NAP sing 303 n y C5A C4A NAP doub 304 n y C6A N6A NAP sing 305 n n C6A N1A NAP doub 306 n y N6A H61A NAP sing 307 n n N6A H62A NAP sing 308 n n N1A C2A NAP sing 309 n y C2A N3A NAP doub 310 n y C2A H2A NAP sing 311 n n N3A C4A NAP sing 312 n y O3 PN NAP sing 313 n n PN O1N NAP doub 314 n n PN O2N NAP sing 315 n n PN O5D NAP sing 316 n n O5D C5D NAP sing 317 n n C5D C4D NAP sing 318 n n C5D H51N NAP sing 319 n n C5D H52N NAP sing 320 n n C4D O4D NAP sing 321 n n C4D C3D NAP sing 322 n n C4D H4D NAP sing 323 n n O4D C1D NAP sing 324 n n C3D O3D NAP sing 325 n n C3D C2D NAP sing 326 n n C3D H3D NAP sing 327 n n O3D HO3N NAP sing 328 n n C2D O2D NAP sing 329 n n C2D C1D NAP sing 330 n n C2D H2D NAP sing 331 n n O2D HO2N NAP sing 332 n n C1D N1N NAP sing 333 n n C1D H1D NAP sing 334 n n N1N C2N NAP sing 335 n y N1N C6N NAP doub 336 n y C2N C3N NAP doub 337 n y C2N H2N NAP sing 338 n n C3N C7N NAP sing 339 n n C3N C4N NAP sing 340 n y C7N O7N NAP doub 341 n n C7N N7N NAP sing 342 n n N7N H71N NAP sing 343 n n N7N H72N NAP sing 344 n n C4N C5N NAP doub 345 n y C4N H4N NAP sing 346 n n C5N C6N NAP sing 347 n y C5N H5N NAP sing 348 n n C6N H6N NAP sing 349 n n P2B O1X NAP doub 350 n n P2B O2X NAP sing 351 n n P2B O3X NAP sing 352 n n O2X HOP2 NAP sing 353 n n O3X HOP3 NAP sing 354 n n # _atom_sites.entry_id 7X3M _atom_sites.fract_transf_matrix[1][1] 0.020381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004466 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 401 NAP NAP . D 3 8IH A 1 402 501 8IH LIG . E 2 NAP B 1 401 401 NAP NAP . F 3 8IH B 1 402 501 8IH LIG . G 4 HOH A 1 501 78 HOH HOH . G 4 HOH A 2 502 161 HOH HOH . G 4 HOH A 3 503 301 HOH HOH . G 4 HOH A 4 504 53 HOH HOH . G 4 HOH A 5 505 47 HOH HOH . G 4 HOH A 6 506 89 HOH HOH . G 4 HOH A 7 507 32 HOH HOH . G 4 HOH A 8 508 118 HOH HOH . G 4 HOH A 9 509 234 HOH HOH . G 4 HOH A 10 510 279 HOH HOH . G 4 HOH A 11 511 314 HOH HOH . G 4 HOH A 12 512 22 HOH HOH . G 4 HOH A 13 513 64 HOH HOH . G 4 HOH A 14 514 120 HOH HOH . G 4 HOH A 15 515 181 HOH HOH . G 4 HOH A 16 516 61 HOH HOH . G 4 HOH A 17 517 196 HOH HOH . G 4 HOH A 18 518 3 HOH HOH . G 4 HOH A 19 519 214 HOH HOH . G 4 HOH A 20 520 57 HOH HOH . G 4 HOH A 21 521 277 HOH HOH . G 4 HOH A 22 522 368 HOH HOH . G 4 HOH A 23 523 7 HOH HOH . G 4 HOH A 24 524 36 HOH HOH . G 4 HOH A 25 525 90 HOH HOH . G 4 HOH A 26 526 280 HOH HOH . G 4 HOH A 27 527 34 HOH HOH . G 4 HOH A 28 528 49 HOH HOH . G 4 HOH A 29 529 198 HOH HOH . G 4 HOH A 30 530 153 HOH HOH . G 4 HOH A 31 531 11 HOH HOH . G 4 HOH A 32 532 187 HOH HOH . G 4 HOH A 33 533 59 HOH HOH . G 4 HOH A 34 534 272 HOH HOH . G 4 HOH A 35 535 178 HOH HOH . G 4 HOH A 36 536 95 HOH HOH . G 4 HOH A 37 537 180 HOH HOH . G 4 HOH A 38 538 138 HOH HOH . G 4 HOH A 39 539 182 HOH HOH . G 4 HOH A 40 540 134 HOH HOH . G 4 HOH A 41 541 257 HOH HOH . G 4 HOH A 42 542 17 HOH HOH . G 4 HOH A 43 543 213 HOH HOH . G 4 HOH A 44 544 100 HOH HOH . G 4 HOH A 45 545 356 HOH HOH . G 4 HOH A 46 546 197 HOH HOH . G 4 HOH A 47 547 94 HOH HOH . G 4 HOH A 48 548 9 HOH HOH . G 4 HOH A 49 549 18 HOH HOH . G 4 HOH A 50 550 287 HOH HOH . G 4 HOH A 51 551 297 HOH HOH . G 4 HOH A 52 552 54 HOH HOH . G 4 HOH A 53 553 267 HOH HOH . G 4 HOH A 54 554 119 HOH HOH . G 4 HOH A 55 555 219 HOH HOH . G 4 HOH A 56 556 339 HOH HOH . G 4 HOH A 57 557 19 HOH HOH . G 4 HOH A 58 558 42 HOH HOH . G 4 HOH A 59 559 30 HOH HOH . G 4 HOH A 60 560 91 HOH HOH . G 4 HOH A 61 561 179 HOH HOH . G 4 HOH A 62 562 16 HOH HOH . G 4 HOH A 63 563 283 HOH HOH . G 4 HOH A 64 564 121 HOH HOH . G 4 HOH A 65 565 233 HOH HOH . G 4 HOH A 66 566 337 HOH HOH . G 4 HOH A 67 567 117 HOH HOH . G 4 HOH A 68 568 141 HOH HOH . G 4 HOH A 69 569 386 HOH HOH . H 4 HOH B 1 501 62 HOH HOH . H 4 HOH B 2 502 75 HOH HOH . H 4 HOH B 3 503 31 HOH HOH . H 4 HOH B 4 504 238 HOH HOH . H 4 HOH B 5 505 383 HOH HOH . H 4 HOH B 6 506 202 HOH HOH . H 4 HOH B 7 507 194 HOH HOH . H 4 HOH B 8 508 83 HOH HOH . H 4 HOH B 9 509 127 HOH HOH . H 4 HOH B 10 510 77 HOH HOH . H 4 HOH B 11 511 92 HOH HOH . H 4 HOH B 12 512 227 HOH HOH . H 4 HOH B 13 513 228 HOH HOH . H 4 HOH B 14 514 76 HOH HOH . H 4 HOH B 15 515 154 HOH HOH . H 4 HOH B 16 516 129 HOH HOH . H 4 HOH B 17 517 150 HOH HOH . H 4 HOH B 18 518 204 HOH HOH . H 4 HOH B 19 519 164 HOH HOH . H 4 HOH B 20 520 8 HOH HOH . H 4 HOH B 21 521 73 HOH HOH . H 4 HOH B 22 522 27 HOH HOH . H 4 HOH B 23 523 252 HOH HOH . H 4 HOH B 24 524 5 HOH HOH . H 4 HOH B 25 525 273 HOH HOH . H 4 HOH B 26 526 151 HOH HOH . H 4 HOH B 27 527 13 HOH HOH . H 4 HOH B 28 528 255 HOH HOH . H 4 HOH B 29 529 375 HOH HOH . H 4 HOH B 30 530 2 HOH HOH . H 4 HOH B 31 531 55 HOH HOH . H 4 HOH B 32 532 285 HOH HOH . H 4 HOH B 33 533 112 HOH HOH . H 4 HOH B 34 534 305 HOH HOH . H 4 HOH B 35 535 43 HOH HOH . H 4 HOH B 36 536 86 HOH HOH . H 4 HOH B 37 537 171 HOH HOH . H 4 HOH B 38 538 143 HOH HOH . H 4 HOH B 39 539 23 HOH HOH . H 4 HOH B 40 540 385 HOH HOH . H 4 HOH B 41 541 25 HOH HOH . H 4 HOH B 42 542 87 HOH HOH . H 4 HOH B 43 543 316 HOH HOH . H 4 HOH B 44 544 12 HOH HOH . H 4 HOH B 45 545 152 HOH HOH . H 4 HOH B 46 546 93 HOH HOH . H 4 HOH B 47 547 156 HOH HOH . H 4 HOH B 48 548 124 HOH HOH . H 4 HOH B 49 549 378 HOH HOH . H 4 HOH B 50 550 102 HOH HOH . H 4 HOH B 51 551 249 HOH HOH . H 4 HOH B 52 552 384 HOH HOH . H 4 HOH B 53 553 296 HOH HOH . H 4 HOH B 54 554 374 HOH HOH . H 4 HOH B 55 555 212 HOH HOH . H 4 HOH B 56 556 377 HOH HOH . H 4 HOH B 57 557 167 HOH HOH . H 4 HOH B 58 558 166 HOH HOH . H 4 HOH B 59 559 259 HOH HOH . H 4 HOH B 60 560 183 HOH HOH . H 4 HOH B 61 561 379 HOH HOH . H 4 HOH B 62 562 250 HOH HOH . H 4 HOH B 63 563 20 HOH HOH . H 4 HOH B 64 564 288 HOH HOH . H 4 HOH B 65 565 381 HOH HOH . H 4 HOH B 66 566 21 HOH HOH . H 4 HOH B 67 567 38 HOH HOH . H 4 HOH B 68 568 276 HOH HOH . H 4 HOH B 69 569 239 HOH HOH . H 4 HOH B 70 570 380 HOH HOH . H 4 HOH B 71 571 169 HOH HOH . H 4 HOH B 72 572 352 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 14.112 3.324 -3.07 1 31.17 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . C 2 14.832 2.467 -4.106 1 26.96 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . C 2 13.691 2.455 -1.882 1 29.5 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . C 2 12.755 4.002 -3.761 1 20.59 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . C 2 12.894 4.618 -5.056 1 17.45 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . C 2 11.648 5.506 -5.28 1 24.79 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . C 2 10.564 4.741 -5.235 1 31.6 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . C 2 11.478 6.467 -4.1 1 24.34 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . C 2 12.044 7.651 -4.378 1 23.17 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . C 2 9.917 6.619 -3.935 1 22.26 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . C 2 9.5 7.976 -4.438 1 20.59 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . C 2 9.368 5.692 -4.675 1 25.87 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . C 2 8.443 4.905 -3.906 1 25.07 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . C 2 8.372 4.576 -2.604 1 25.56 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . C 2 7.278 3.803 -2.421 1 26.56 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . C 2 6.666 3.656 -3.623 1 28.28 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . C 2 5.528 2.981 -4.002 1 28.95 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . C 2 4.631 2.198 -3.154 1 20.32 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . C 2 5.134 2.997 -5.284 1 34.45 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . C 2 5.854 3.678 -6.207 1 32.4 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . C 2 6.976 4.346 -5.838 1 25.92 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . C 2 7.38 4.333 -4.539 1 25.08 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . C 2 15.105 4.58 -2.547 1 33.17 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . C 2 16.716 4.463 -2.333 1 28.52 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . C 2 17.24 5.765 -1.839 1 31.97 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . C 2 17.389 4.101 -3.614 1 38.15 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . C 2 16.99 3.287 -1.202 1 31.58 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . C 2 16.096 3.264 -0.043 1 32.47 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . C 2 16.917 3.51 1.246 1 27.33 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . C 2 17.942 2.704 1.254 1 21.74 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . C 2 17.54 4.925 1.24 1 22.1 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . C 2 16.686 5.875 1.716 1 28.48 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . C 2 18.746 4.734 2.181 1 18.83 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . C 2 18.28 4.838 3.605 1 20.31 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . C 2 19.166 3.513 1.954 1 23.05 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . C 2 20.353 3.485 1.106 1 28.39 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . C 2 21.514 2.99 1.617 1 28.27 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . C 2 22.664 2.948 0.837 1 27.4 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . C 2 23.961 2.396 1.412 1 25.27 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . C 2 24.999 2.635 0.862 1 27.15 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . C 2 23.937 1.579 2.617 1 22.51 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . C 2 22.637 3.398 -0.441 1 27.07 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . C 2 21.482 3.898 -0.959 1 31.03 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . C 2 20.329 3.931 -0.17 1 29.79 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . C 2 8.74 9.013 -3.392 1 28.88 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . C 2 9.718 9.504 -2.387 1 26.17 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . C 2 8.184 10.183 -4.169 1 22.83 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . C 2 7.613 8.289 -2.685 1 24.52 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #