data_7X48 # _model_server_result.job_id J5hrIaU1UjeN1Qw3Lbw4HA _model_server_result.datetime_utc '2024-11-27 19:21:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 7X48 # _exptl.entry_id 7X48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.238 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'nonanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7X48 _cell.length_a 54.584 _cell.length_b 69.875 _cell.length_c 33.858 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H18 O2' _chem_comp.formula_weight 158.238 _chem_comp.id KNA _chem_comp.mon_nstd_flag . _chem_comp.name 'nonanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C1 KNA doub 173 n n C1 C2 KNA sing 174 n n C1 O1 KNA sing 175 n n O1 HO1 KNA sing 176 n n C3 C2 KNA sing 177 n n C2 H2 KNA sing 178 n n C2 H2A KNA sing 179 n n C3 C4 KNA sing 180 n n C3 H3 KNA sing 181 n n C3 H3A KNA sing 182 n n C5 C4 KNA sing 183 n n C4 H4 KNA sing 184 n n C4 H4A KNA sing 185 n n C5 C6 KNA sing 186 n n C5 H5 KNA sing 187 n n C5 H5A KNA sing 188 n n C6 C7 KNA sing 189 n n C6 H6 KNA sing 190 n n C6 H6A KNA sing 191 n n C7 C8 KNA sing 192 n n C7 H7 KNA sing 193 n n C7 H7A KNA sing 194 n n C8 C9 KNA sing 195 n n C8 H8 KNA sing 196 n n C8 H8A KNA sing 197 n n C9 H9 KNA sing 198 n n C9 H9A KNA sing 199 n n C9 H9B KNA sing 200 n n # _atom_sites.entry_id 7X48 _atom_sites.fract_transf_matrix[1][1] 0.01832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KNA A 1 200 200 KNA C99 . C 3 P6G A 1 201 201 P6G P6G . D 4 HOH A 1 301 1154 HOH HOH . D 4 HOH A 2 302 1158 HOH HOH . D 4 HOH A 3 303 1228 HOH HOH . D 4 HOH A 4 304 1245 HOH HOH . D 4 HOH A 5 305 1169 HOH HOH . D 4 HOH A 6 306 1051 HOH HOH . D 4 HOH A 7 307 1058 HOH HOH . D 4 HOH A 8 308 1206 HOH HOH . D 4 HOH A 9 309 1042 HOH HOH . D 4 HOH A 10 310 1222 HOH HOH . D 4 HOH A 11 311 1059 HOH HOH . D 4 HOH A 12 312 1219 HOH HOH . D 4 HOH A 13 313 1020 HOH HOH . D 4 HOH A 14 314 1061 HOH HOH . D 4 HOH A 15 315 1057 HOH HOH . D 4 HOH A 16 316 1225 HOH HOH . D 4 HOH A 17 317 1060 HOH HOH . D 4 HOH A 18 318 1024 HOH HOH . D 4 HOH A 19 319 1078 HOH HOH . D 4 HOH A 20 320 1235 HOH HOH . D 4 HOH A 21 321 1241 HOH HOH . D 4 HOH A 22 322 1163 HOH HOH . D 4 HOH A 23 323 1170 HOH HOH . D 4 HOH A 24 324 1085 HOH HOH . D 4 HOH A 25 325 1117 HOH HOH . D 4 HOH A 26 326 1074 HOH HOH . D 4 HOH A 27 327 1166 HOH HOH . D 4 HOH A 28 328 1013 HOH HOH . D 4 HOH A 29 329 1101 HOH HOH . D 4 HOH A 30 330 1014 HOH HOH . D 4 HOH A 31 331 1157 HOH HOH . D 4 HOH A 32 332 1131 HOH HOH . D 4 HOH A 33 333 1234 HOH HOH . D 4 HOH A 34 334 1082 HOH HOH . D 4 HOH A 35 335 1128 HOH HOH . D 4 HOH A 36 336 1106 HOH HOH . D 4 HOH A 37 337 1244 HOH HOH . D 4 HOH A 38 338 1232 HOH HOH . D 4 HOH A 39 339 1007 HOH HOH . D 4 HOH A 40 340 1028 HOH HOH . D 4 HOH A 41 341 1109 HOH HOH . D 4 HOH A 42 342 1026 HOH HOH . D 4 HOH A 43 343 1118 HOH HOH . D 4 HOH A 44 344 1080 HOH HOH . D 4 HOH A 45 345 1119 HOH HOH . D 4 HOH A 46 346 1017 HOH HOH . D 4 HOH A 47 347 1099 HOH HOH . D 4 HOH A 48 348 1229 HOH HOH . D 4 HOH A 49 349 1047 HOH HOH . D 4 HOH A 50 350 1115 HOH HOH . D 4 HOH A 51 351 1055 HOH HOH . D 4 HOH A 52 352 1066 HOH HOH . D 4 HOH A 53 353 1132 HOH HOH . D 4 HOH A 54 354 1040 HOH HOH . D 4 HOH A 55 355 1079 HOH HOH . D 4 HOH A 56 356 1104 HOH HOH . D 4 HOH A 57 357 1065 HOH HOH . D 4 HOH A 58 358 1009 HOH HOH . D 4 HOH A 59 359 1124 HOH HOH . D 4 HOH A 60 360 1114 HOH HOH . D 4 HOH A 61 361 1045 HOH HOH . D 4 HOH A 62 362 1176 HOH HOH . D 4 HOH A 63 363 1046 HOH HOH . D 4 HOH A 64 364 1088 HOH HOH . D 4 HOH A 65 365 1036 HOH HOH . D 4 HOH A 66 366 1033 HOH HOH . D 4 HOH A 67 367 1110 HOH HOH . D 4 HOH A 68 368 1112 HOH HOH . D 4 HOH A 69 369 1105 HOH HOH . D 4 HOH A 70 370 1123 HOH HOH . D 4 HOH A 71 371 1121 HOH HOH . D 4 HOH A 72 372 1011 HOH HOH . D 4 HOH A 73 373 1126 HOH HOH . D 4 HOH A 74 374 1063 HOH HOH . D 4 HOH A 75 375 1053 HOH HOH . D 4 HOH A 76 376 1037 HOH HOH . D 4 HOH A 77 377 1054 HOH HOH . D 4 HOH A 78 378 1015 HOH HOH . D 4 HOH A 79 379 1030 HOH HOH . D 4 HOH A 80 380 1098 HOH HOH . D 4 HOH A 81 381 1192 HOH HOH . D 4 HOH A 82 382 1004 HOH HOH . D 4 HOH A 83 383 1070 HOH HOH . D 4 HOH A 84 384 1067 HOH HOH . D 4 HOH A 85 385 1072 HOH HOH . D 4 HOH A 86 386 1237 HOH HOH . D 4 HOH A 87 387 1155 HOH HOH . D 4 HOH A 88 388 1075 HOH HOH . D 4 HOH A 89 389 1134 HOH HOH . D 4 HOH A 90 390 1095 HOH HOH . D 4 HOH A 91 391 1100 HOH HOH . D 4 HOH A 92 392 1092 HOH HOH . D 4 HOH A 93 393 1018 HOH HOH . D 4 HOH A 94 394 1087 HOH HOH . D 4 HOH A 95 395 1097 HOH HOH . D 4 HOH A 96 396 1025 HOH HOH . D 4 HOH A 97 397 1091 HOH HOH . D 4 HOH A 98 398 1010 HOH HOH . D 4 HOH A 99 399 1056 HOH HOH . D 4 HOH A 100 400 1032 HOH HOH . D 4 HOH A 101 401 1068 HOH HOH . D 4 HOH A 102 402 1146 HOH HOH . D 4 HOH A 103 403 1086 HOH HOH . D 4 HOH A 104 404 1019 HOH HOH . D 4 HOH A 105 405 1224 HOH HOH . D 4 HOH A 106 406 1021 HOH HOH . D 4 HOH A 107 407 1221 HOH HOH . D 4 HOH A 108 408 1039 HOH HOH . D 4 HOH A 109 409 1183 HOH HOH . D 4 HOH A 110 410 1084 HOH HOH . D 4 HOH A 111 411 1069 HOH HOH . D 4 HOH A 112 412 1200 HOH HOH . D 4 HOH A 113 413 1035 HOH HOH . D 4 HOH A 114 414 1177 HOH HOH . D 4 HOH A 115 415 1022 HOH HOH . D 4 HOH A 116 416 1077 HOH HOH . D 4 HOH A 117 417 1122 HOH HOH . D 4 HOH A 118 418 1129 HOH HOH . D 4 HOH A 119 419 1049 HOH HOH . D 4 HOH A 120 420 1215 HOH HOH . D 4 HOH A 121 421 1212 HOH HOH . D 4 HOH A 122 422 1094 HOH HOH . D 4 HOH A 123 423 1029 HOH HOH . D 4 HOH A 124 424 1113 HOH HOH . D 4 HOH A 125 425 1149 HOH HOH . D 4 HOH A 126 426 1090 HOH HOH . D 4 HOH A 127 427 1120 HOH HOH . D 4 HOH A 128 428 1218 HOH HOH . D 4 HOH A 129 429 1127 HOH HOH . D 4 HOH A 130 430 1111 HOH HOH . D 4 HOH A 131 431 1216 HOH HOH . D 4 HOH A 132 432 1005 HOH HOH . D 4 HOH A 133 433 1223 HOH HOH . D 4 HOH A 134 434 1006 HOH HOH . D 4 HOH A 135 435 1062 HOH HOH . D 4 HOH A 136 436 1168 HOH HOH . D 4 HOH A 137 437 1125 HOH HOH . D 4 HOH A 138 438 1138 HOH HOH . D 4 HOH A 139 439 1093 HOH HOH . D 4 HOH A 140 440 1038 HOH HOH . D 4 HOH A 141 441 1201 HOH HOH . D 4 HOH A 142 442 1184 HOH HOH . D 4 HOH A 143 443 1064 HOH HOH . D 4 HOH A 144 444 1003 HOH HOH . D 4 HOH A 145 445 1076 HOH HOH . D 4 HOH A 146 446 1242 HOH HOH . D 4 HOH A 147 447 1041 HOH HOH . D 4 HOH A 148 448 1073 HOH HOH . D 4 HOH A 149 449 1214 HOH HOH . D 4 HOH A 150 450 1239 HOH HOH . D 4 HOH A 151 451 1220 HOH HOH . D 4 HOH A 152 452 1130 HOH HOH . D 4 HOH A 153 453 1226 HOH HOH . D 4 HOH A 154 454 1254 HOH HOH . D 4 HOH A 155 455 1016 HOH HOH . D 4 HOH A 156 456 1181 HOH HOH . D 4 HOH A 157 457 1251 HOH HOH . D 4 HOH A 158 458 1161 HOH HOH . D 4 HOH A 159 459 1103 HOH HOH . D 4 HOH A 160 460 1136 HOH HOH . D 4 HOH A 161 461 1043 HOH HOH . D 4 HOH A 162 462 1144 HOH HOH . D 4 HOH A 163 463 1179 HOH HOH . D 4 HOH A 164 464 1213 HOH HOH . D 4 HOH A 165 465 1233 HOH HOH . D 4 HOH A 166 466 1012 HOH HOH . D 4 HOH A 167 467 1203 HOH HOH . D 4 HOH A 168 468 1023 HOH HOH . D 4 HOH A 169 469 1002 HOH HOH . D 4 HOH A 170 470 1151 HOH HOH . D 4 HOH A 171 471 1152 HOH HOH . D 4 HOH A 172 472 1048 HOH HOH . D 4 HOH A 173 473 1031 HOH HOH . D 4 HOH A 174 474 1142 HOH HOH . D 4 HOH A 175 475 1102 HOH HOH . D 4 HOH A 176 476 1081 HOH HOH . D 4 HOH A 177 477 1164 HOH HOH . D 4 HOH A 178 478 1211 HOH HOH . D 4 HOH A 179 479 1044 HOH HOH . D 4 HOH A 180 480 1236 HOH HOH . D 4 HOH A 181 481 1107 HOH HOH . D 4 HOH A 182 482 1052 HOH HOH . D 4 HOH A 183 483 1096 HOH HOH . D 4 HOH A 184 484 1008 HOH HOH . D 4 HOH A 185 485 1034 HOH HOH . D 4 HOH A 186 486 1191 HOH HOH . D 4 HOH A 187 487 1240 HOH HOH . D 4 HOH A 188 488 1205 HOH HOH . D 4 HOH A 189 489 1199 HOH HOH . D 4 HOH A 190 490 1197 HOH HOH . D 4 HOH A 191 491 1194 HOH HOH . D 4 HOH A 192 492 1089 HOH HOH . D 4 HOH A 193 493 1231 HOH HOH . D 4 HOH A 194 494 1083 HOH HOH . D 4 HOH A 195 495 1173 HOH HOH . D 4 HOH A 196 496 1050 HOH HOH . D 4 HOH A 197 497 1182 HOH HOH . D 4 HOH A 198 498 1253 HOH HOH . D 4 HOH A 199 499 1198 HOH HOH . D 4 HOH A 200 500 1189 HOH HOH . D 4 HOH A 201 501 1252 HOH HOH . D 4 HOH A 202 502 1001 HOH HOH . D 4 HOH A 203 503 1133 HOH HOH . D 4 HOH A 204 504 1250 HOH HOH . D 4 HOH A 205 505 1227 HOH HOH . D 4 HOH A 206 506 1238 HOH HOH . D 4 HOH A 207 507 1208 HOH HOH . D 4 HOH A 208 508 1230 HOH HOH . D 4 HOH A 209 509 1246 HOH HOH . D 4 HOH A 210 510 1185 HOH HOH . D 4 HOH A 211 511 1247 HOH HOH . D 4 HOH A 212 512 1147 HOH HOH . D 4 HOH A 213 513 1217 HOH HOH . D 4 HOH A 214 514 1162 HOH HOH . D 4 HOH A 215 515 1248 HOH HOH . D 4 HOH A 216 516 1153 HOH HOH . D 4 HOH A 217 517 1249 HOH HOH . D 4 HOH A 218 518 1150 HOH HOH . D 4 HOH A 219 519 1159 HOH HOH . D 4 HOH A 220 520 1148 HOH HOH . D 4 HOH A 221 521 1186 HOH HOH . D 4 HOH A 222 522 1174 HOH HOH . D 4 HOH A 223 523 1135 HOH HOH . D 4 HOH A 224 524 1137 HOH HOH . D 4 HOH A 225 525 1141 HOH HOH . D 4 HOH A 226 526 1156 HOH HOH . D 4 HOH A 227 527 1243 HOH HOH . D 4 HOH A 228 528 1071 HOH HOH . D 4 HOH A 229 529 1116 HOH HOH . D 4 HOH A 230 530 1209 HOH HOH . D 4 HOH A 231 531 1027 HOH HOH . D 4 HOH A 232 532 1204 HOH HOH . D 4 HOH A 233 533 1145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KNA . . . B 2 5.805 -16.537 -1.642 1 5.99 ? C1 KNA 200 A 1 HETATM 2 O O1 KNA . . . B 2 4.797 -16.293 -0.961 1 6.49 ? O1 KNA 200 A 1 HETATM 3 C C2 KNA . . . B 2 5.759 -17.626 -2.757 1 7.75 ? C2 KNA 200 A 1 HETATM 4 O O2 KNA . . . B 2 6.883 -15.895 -1.648 1 6.17 ? O2 KNA 200 A 1 HETATM 5 C C3 KNA . A . B 2 6.91 -18.111 -3.667 0.6 10.19 ? C3 KNA 200 A 1 HETATM 6 C C3 KNA . B . B 2 6.95 -18.122 -3.632 0.4 10.07 ? C3 KNA 200 A 1 HETATM 7 C C4 KNA . A . B 2 6.646 -19.43 -4.323 0.6 8.81 ? C4 KNA 200 A 1 HETATM 8 C C4 KNA . B . B 2 6.562 -18.922 -4.843 0.4 10.14 ? C4 KNA 200 A 1 HETATM 9 C C5 KNA . A . B 2 7.971 -19.828 -4.942 0.6 8.36 ? C5 KNA 200 A 1 HETATM 10 C C5 KNA . B . B 2 7.043 -20.304 -4.529 0.4 10.89 ? C5 KNA 200 A 1 HETATM 11 C C6 KNA . A . B 2 7.851 -20.87 -6.043 0.6 9.39 ? C6 KNA 200 A 1 HETATM 12 C C6 KNA . B . B 2 6.746 -21.414 -5.511 0.4 10.62 ? C6 KNA 200 A 1 HETATM 13 C C7 KNA . A . B 2 6.935 -22.039 -5.71 0.6 10.53 ? C7 KNA 200 A 1 HETATM 14 C C7 KNA . B . B 2 7.446 -22.652 -4.961 0.4 10.88 ? C7 KNA 200 A 1 HETATM 15 C C8 KNA . A . B 2 7.53 -22.958 -4.655 0.6 11.95 ? C8 KNA 200 A 1 HETATM 16 C C8 KNA . B . B 2 6.447 -23.615 -4.337 0.4 12.91 ? C8 KNA 200 A 1 HETATM 17 C C9 KNA . A . B 2 6.645 -24.129 -4.293 0.6 13.58 ? C9 KNA 200 A 1 HETATM 18 C C9 KNA . B . B 2 7.087 -24.592 -3.388 0.4 13.32 ? C9 KNA 200 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #