data_7X4N # _model_server_result.job_id Veb3Obc3M7Kl45orGaInXw _model_server_result.datetime_utc '2025-03-04 14:03:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x4n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 7X4N # _exptl.entry_id 7X4N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.51 _cell.angle_gamma 90 _cell.entry_id 7X4N _cell.length_a 82.33 _cell.length_b 80.98 _cell.length_c 117.75 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X4N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 71 A GLU 71 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 E O2G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 E O2B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 D OG1 THR 91 E THR 91 1_555 I MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 D OG SER 217 E SER 217 1_555 I MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 H O1G ANP . E ANP 401 1_555 I MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 H O1B ANP . E ANP 401 1_555 I MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7X4N _atom_sites.fract_transf_matrix[1][1] 0.012146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GTP A 1 501 501 GTP GTP . F 6 MG A 1 502 2 MG MG . G 7 GDP B 1 501 501 GDP GDP . H 8 ANP E 1 401 802 ANP ANP . I 6 MG E 1 402 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 8 -19.753 -48.729 -27.594 1 39.22 ? PG ANP 401 E 1 HETATM 2 O O1G ANP . . . H 8 -20.333 -49.248 -26.297 1 52.26 ? O1G ANP 401 E 1 HETATM 3 O O2G ANP . . . H 8 -20.993 -48.429 -28.518 1 38.78 ? O2G ANP 401 E 1 HETATM 4 O O3G ANP . . . H 8 -18.828 -47.455 -27.441 1 30.77 ? O3G ANP 401 E 1 HETATM 5 P PB ANP . . . H 8 -17.517 -50.314 -27.156 1 47.9 ? PB ANP 401 E 1 HETATM 6 O O1B ANP . . . H 8 -17.988 -50.353 -25.725 1 41.84 ? O1B ANP 401 E 1 HETATM 7 O O2B ANP . . . H 8 -16.471 -49.177 -27.334 1 44.58 ? O2B ANP 401 E 1 HETATM 8 N N3B ANP . . . H 8 -18.8 -49.987 -28.185 1 44.81 ? N3B ANP 401 E 1 HETATM 9 P PA ANP . . . H 8 -17.455 -53.098 -27.17 1 44.95 ? PA ANP 401 E 1 HETATM 10 O O1A ANP . . . H 8 -18.941 -53.122 -26.987 1 35.75 ? O1A ANP 401 E 1 HETATM 11 O O2A ANP . . . H 8 -16.79 -53.49 -25.85 1 41.91 ? O2A ANP 401 E 1 HETATM 12 O O3A ANP . . . H 8 -16.85 -51.673 -27.559 1 44.84 ? O3A ANP 401 E 1 HETATM 13 O O5' ANP . . . H 8 -16.948 -54.04 -28.381 1 50.92 ? O5' ANP 401 E 1 HETATM 14 C C5' ANP . . . H 8 -17.703 -54.368 -29.592 1 46.86 ? C5' ANP 401 E 1 HETATM 15 C C4' ANP . . . H 8 -17.514 -55.818 -30.003 1 42.77 ? C4' ANP 401 E 1 HETATM 16 O O4' ANP . . . H 8 -16.107 -56.134 -30.11 1 44.02 ? O4' ANP 401 E 1 HETATM 17 C C3' ANP . . . H 8 -18.103 -56.869 -29.066 1 42.88 ? C3' ANP 401 E 1 HETATM 18 O O3' ANP . . . H 8 -18.61 -57.959 -29.827 1 60.22 ? O3' ANP 401 E 1 HETATM 19 C C2' ANP . . . H 8 -16.895 -57.288 -28.221 1 44.78 ? C2' ANP 401 E 1 HETATM 20 O O2' ANP . . . H 8 -17.054 -58.634 -27.792 1 60.41 ? O2' ANP 401 E 1 HETATM 21 C C1' ANP . . . H 8 -15.777 -57.204 -29.245 1 40.89 ? C1' ANP 401 E 1 HETATM 22 N N9 ANP . . . H 8 -14.446 -56.967 -28.756 1 41.3 ? N9 ANP 401 E 1 HETATM 23 C C8 ANP . . . H 8 -13.885 -55.75 -28.416 1 46.87 ? C8 ANP 401 E 1 HETATM 24 N N7 ANP . . . H 8 -12.626 -55.801 -28.098 1 50.86 ? N7 ANP 401 E 1 HETATM 25 C C5 ANP . . . H 8 -12.285 -57.13 -28.283 1 48.05 ? C5 ANP 401 E 1 HETATM 26 C C6 ANP . . . H 8 -11.084 -57.85 -28.12 1 49.48 ? C6 ANP 401 E 1 HETATM 27 N N6 ANP . . . H 8 -9.937 -57.283 -27.717 1 52.92 ? N6 ANP 401 E 1 HETATM 28 N N1 ANP . . . H 8 -11.102 -59.179 -28.363 1 48.8 ? N1 ANP 401 E 1 HETATM 29 C C2 ANP . . . H 8 -12.249 -59.741 -28.753 1 51.98 ? C2 ANP 401 E 1 HETATM 30 N N3 ANP . . . H 8 -13.441 -59.171 -28.949 1 50.27 ? N3 ANP 401 E 1 HETATM 31 C C4 ANP . . . H 8 -13.383 -57.854 -28.69 1 42.53 ? C4 ANP 401 E 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #