data_7X4N # _model_server_result.job_id rai_CVbHDZzM0r-L6QklDQ _model_server_result.datetime_utc '2025-03-04 14:19:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x4n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7X4N # _exptl.entry_id 7X4N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.51 _cell.angle_gamma 90 _cell.entry_id 7X4N _cell.length_a 82.33 _cell.length_b 80.98 _cell.length_c 117.75 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X4N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 71 A GLU 71 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc2 E O2G GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 E O2B GTP . A GTP 501 1_555 F MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 D OG1 THR 91 E THR 91 1_555 I MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 D OG SER 217 E SER 217 1_555 I MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc6 H O1G ANP . E ANP 401 1_555 I MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 H O1B ANP . E ANP 401 1_555 I MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 224 n n PG O2G GTP sing 225 n n PG O3G GTP sing 226 n n PG O3B GTP sing 227 n n O2G HOG2 GTP sing 228 n n O3G HOG3 GTP sing 229 n n O3B PB GTP sing 230 n n PB O1B GTP doub 231 n n PB O2B GTP sing 232 n n PB O3A GTP sing 233 n n O2B HOB2 GTP sing 234 n n O3A PA GTP sing 235 n n PA O1A GTP doub 236 n n PA O2A GTP sing 237 n n PA O5' GTP sing 238 n n O2A HOA2 GTP sing 239 n n O5' C5' GTP sing 240 n n C5' C4' GTP sing 241 n n C5' H5' GTP sing 242 n n C5' "H5''" GTP sing 243 n n C4' O4' GTP sing 244 n n C4' C3' GTP sing 245 n n C4' H4' GTP sing 246 n n O4' C1' GTP sing 247 n n C3' O3' GTP sing 248 n n C3' C2' GTP sing 249 n n C3' H3' GTP sing 250 n n O3' HO3' GTP sing 251 n n C2' O2' GTP sing 252 n n C2' C1' GTP sing 253 n n C2' H2' GTP sing 254 n n O2' HO2' GTP sing 255 n n C1' N9 GTP sing 256 n n C1' H1' GTP sing 257 n n N9 C8 GTP sing 258 n y N9 C4 GTP sing 259 n y C8 N7 GTP doub 260 n y C8 H8 GTP sing 261 n n N7 C5 GTP sing 262 n y C5 C6 GTP sing 263 n n C5 C4 GTP doub 264 n y C6 O6 GTP doub 265 n n C6 N1 GTP sing 266 n n N1 C2 GTP sing 267 n n N1 HN1 GTP sing 268 n n C2 N2 GTP sing 269 n n C2 N3 GTP doub 270 n n N2 HN21 GTP sing 271 n n N2 HN22 GTP sing 272 n n N3 C4 GTP sing 273 n n # _atom_sites.entry_id 7X4N _atom_sites.fract_transf_matrix[1][1] 0.012146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GTP A 1 501 501 GTP GTP . F 6 MG A 1 502 2 MG MG . G 7 GDP B 1 501 501 GDP GDP . H 8 ANP E 1 401 802 ANP ANP . I 6 MG E 1 402 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 5 -29.502 -20.386 -42.949 1 41.84 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . E 5 -28.278 -20.048 -42.12 1 29.11 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . E 5 -30.489 -19.221 -42.961 1 37.26 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . E 5 -30.169 -21.677 -42.57 1 32.38 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . E 5 -28.929 -20.787 -44.402 1 46.63 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . E 5 -28.743 -19.714 -45.563 1 41.98 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . E 5 -28.193 -20.512 -46.722 1 48.87 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . E 5 -30.093 -19.077 -45.823 1 43.27 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . E 5 -27.626 -18.64 -45.123 1 36.98 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . E 5 -27.178 -17.449 -46.122 1 41.91 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . E 5 -27.849 -16.154 -45.704 1 41.15 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . E 5 -27.502 -17.774 -47.559 1 37.43 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . E 5 -25.574 -17.322 -45.905 1 35.6 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . E 5 -24.958 -16.179 -45.351 1 33.83 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . E 5 -23.861 -15.676 -46.276 1 35.68 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . E 5 -24.473 -15.419 -47.507 1 38.55 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . E 5 -23.211 -14.373 -45.845 1 37.7 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . E 5 -21.801 -14.439 -46.001 1 32.63 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . E 5 -23.722 -13.333 -46.81 1 41.53 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . E 5 -22.632 -12.478 -47.075 1 48.2 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . E 5 -24.134 -14.151 -48.026 1 33.8 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . E 5 -25.367 -13.774 -48.742 1 33.79 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . E 5 -26.646 -13.982 -48.287 1 34.75 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . E 5 -27.526 -13.579 -49.243 1 39.54 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . E 5 -26.832 -13.148 -50.339 1 41.11 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . E 5 -27.227 -12.624 -51.583 1 35.38 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . E 5 -28.414 -12.476 -51.901 1 35.42 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . E 5 -26.259 -12.258 -52.491 1 34.96 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . E 5 -24.923 -12.403 -52.194 1 32.63 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . E 5 -24.026 -12.043 -53.103 1 40.53 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . E 5 -24.521 -12.915 -50.981 1 34.21 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . E 5 -25.461 -13.281 -50.047 1 43.59 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #