data_7X53
#
_model_server_result.job_id            gUP34kRnyPFHVnn3AF-KUw 
_model_server_result.datetime_utc      '2025-02-05 09:40:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7x53 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    7X53 
#
_exptl.entry_id    7X53 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.94 
_cell.angle_gamma         90 
_cell.entry_id            7X53 
_cell.length_a            79.831 
_cell.length_b            55.63 
_cell.length_c            88.023 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7X53 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 361 A CYS 361 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc2 B SG CYS 361 B CYS 361 1_555 D FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     7X53 
_atom_sites.fract_transf_matrix[1][1]    0.012526 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002877 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017976 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 601 HEM HEM . 
D 2 HEM B 1 601 601 HEM HEM . 
E 3 HOH A 1 701 5 HOH HOH . 
E 3 HOH A 2 702 4 HOH HOH . 
E 3 HOH A 3 703 10 HOH HOH . 
E 3 HOH A 4 704 7 HOH HOH . 
E 3 HOH A 5 705 6 HOH HOH . 
E 3 HOH A 6 706 3 HOH HOH . 
F 3 HOH B 1 701 8 HOH HOH . 
F 3 HOH B 2 702 1 HOH HOH . 
F 3 HOH B 3 703 9 HOH HOH . 
F 3 HOH B 4 704 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 2 1.78 -5.335 23.98 1 37.4 ? CHA HEM 601 B 1 
HETATM 2 C CHB HEM . . . D 2 2.015 -1.11 26.375 1 37.85 ? CHB HEM 601 B 1 
HETATM 3 C CHC HEM . . . D 2 -0.898 0.916 23.061 1 39.58 ? CHC HEM 601 B 1 
HETATM 4 C CHD HEM . . . D 2 -1.324 -3.359 20.802 1 37.68 ? CHD HEM 601 B 1 
HETATM 5 C C1A HEM . . . D 2 2.036 -4.398 24.96 1 37.18 ? C1A HEM 601 B 1 
HETATM 6 C C2A HEM . . . D 2 2.658 -4.638 26.249 1 37.12 ? C2A HEM 601 B 1 
HETATM 7 C C3A HEM . . . D 2 2.722 -3.474 26.901 1 37.74 ? C3A HEM 601 B 1 
HETATM 8 C C4A HEM . . . D 2 2.14 -2.447 26.061 1 37.43 ? C4A HEM 601 B 1 
HETATM 9 C CMA HEM . . . D 2 3.314 -3.261 28.31 1 40.04 ? CMA HEM 601 B 1 
HETATM 10 C CAA HEM . . . D 2 3.175 -5.99 26.788 1 37.56 ? CAA HEM 601 B 1 
HETATM 11 C CBA HEM . . . D 2 4.366 -6.454 25.957 1 38.39 ? CBA HEM 601 B 1 
HETATM 12 C CGA HEM . . . D 2 4.936 -7.72 26.541 1 39.6 ? CGA HEM 601 B 1 
HETATM 13 O O1A HEM . . . D 2 4.191 -8.439 27.255 1 40.34 ? O1A HEM 601 B 1 
HETATM 14 O O2A HEM . . . D 2 6.135 -8.009 26.291 1 40.03 ? O2A HEM 601 B 1 
HETATM 15 C C1B HEM . . . D 2 1.235 -0.194 25.702 1 38.85 ? C1B HEM 601 B 1 
HETATM 16 C C2B HEM . . . D 2 0.986 1.177 26.104 1 39.67 ? C2B HEM 601 B 1 
HETATM 17 C C3B HEM . . . D 2 0.175 1.735 25.192 1 39.97 ? C3B HEM 601 B 1 
HETATM 18 C C4B HEM . . . D 2 -0.107 0.738 24.178 1 39.38 ? C4B HEM 601 B 1 
HETATM 19 C CMB HEM . . . D 2 1.561 1.837 27.377 1 40.4 ? CMB HEM 601 B 1 
HETATM 20 C CAB HEM . . . D 2 -0.377 3.179 25.168 1 41.04 ? CAB HEM 601 B 1 
HETATM 21 C CBB HEM . . . D 2 0.399 4.25 25.38 1 41.59 ? CBB HEM 601 B 1 
HETATM 22 C C1C HEM . . . D 2 -1.249 -0.055 22.147 1 39.38 ? C1C HEM 601 B 1 
HETATM 23 C C2C HEM . . . D 2 -2.051 0.154 20.958 1 38.96 ? C2C HEM 601 B 1 
HETATM 24 C C3C HEM . . . D 2 -2.171 -1.031 20.326 1 38.63 ? C3C HEM 601 B 1 
HETATM 25 C C4C HEM . . . D 2 -1.447 -2.018 21.105 1 38.24 ? C4C HEM 601 B 1 
HETATM 26 C CMC HEM . . . D 2 -2.629 1.532 20.558 1 39.1 ? CMC HEM 601 B 1 
HETATM 27 C CAC HEM . . . D 2 -2.921 -1.39 19.015 1 38.99 ? CAC HEM 601 B 1 
HETATM 28 C CBC HEM . . . D 2 -3.652 -0.537 18.287 1 39.42 ? CBC HEM 601 B 1 
HETATM 29 C C1D HEM . . . D 2 -0.534 -4.275 21.467 1 37.54 ? C1D HEM 601 B 1 
HETATM 30 C C2D HEM . . . D 2 -0.395 -5.683 21.149 1 37.54 ? C2D HEM 601 B 1 
HETATM 31 C C3D HEM . . . D 2 0.456 -6.228 22.023 1 37.42 ? C3D HEM 601 B 1 
HETATM 32 C C4D HEM . . . D 2 0.897 -5.187 22.931 1 37.38 ? C4D HEM 601 B 1 
HETATM 33 C CMD HEM . . . D 2 -1.109 -6.43 20.002 1 37.84 ? CMD HEM 601 B 1 
HETATM 34 C CAD HEM . . . D 2 0.898 -7.707 22.055 1 37.81 ? CAD HEM 601 B 1 
HETATM 35 C CBD HEM . . . D 2 2.262 -7.844 21.385 1 38.03 ? CBD HEM 601 B 1 
HETATM 36 C CGD HEM . . . D 2 2.702 -9.284 21.408 1 39.19 ? CGD HEM 601 B 1 
HETATM 37 O O1D HEM . . . D 2 3.258 -9.758 20.384 1 39.18 ? O1D HEM 601 B 1 
HETATM 38 O O2D HEM . . . D 2 2.496 -9.958 22.45 1 40.3 ? O2D HEM 601 B 1 
HETATM 39 N NA HEM . . . D 2 1.731 -3.05 24.886 1 37.1 ? NA HEM 601 B 1 
HETATM 40 N NB HEM . . . D 2 0.555 -0.425 24.522 1 38.92 ? NB HEM 601 B 1 
HETATM 41 N NC HEM . . . D 2 -0.899 -1.388 22.205 1 38.23 ? NC HEM 601 B 1 
HETATM 42 N ND HEM . . . D 2 0.271 -4.011 22.56 1 37.37 ? ND HEM 601 B 1 
HETATM 43 FE FE HEM . . . D 2 0.384 -2.23 23.568 1 38.2 ? FE HEM 601 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#