data_7X64
#
_model_server_result.job_id            X_a2T0Gj7wm9f3KGnViJvQ 
_model_server_result.datetime_utc      '2024-10-22 07:34:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7x64 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    7X64 
#
_exptl.entry_id    7X64 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.442 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(phenylmethyl)quinazoline-2,4-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.81 
_cell.angle_gamma         90 
_cell.entry_id            7X64 
_cell.length_a            77.498 
_cell.length_b            83.939 
_cell.length_c            65.666 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7X64 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 373 A CYS 401 1_555 A SG CYS 388 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A NE2 HIS 198 A HIS 226 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc2 A NE2 HIS 280 A HIS 308 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc3 A OE1 GLU 366 A GLU 394 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc4 B CO CO . A CO 501 1_555 C O24 9XU . A 9XU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc5 B CO CO . A CO 501 1_555 C O14 9XU . A 9XU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
#
_chem_comp.formula           'C24 H22 N2 O5' 
_chem_comp.formula_weight    418.442 
_chem_comp.id                9XU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(phenylmethyl)quinazoline-2,4-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O24 C19 9XU doub 1 n n 
O14 C12 9XU doub 2 n n 
C11 C6 9XU sing 3 n n 
C19 C20 9XU sing 4 n n 
C19 C18 9XU sing 5 n n 
C20 C21 9XU sing 6 n n 
O13 C10 9XU doub 7 n n 
C18 C12 9XU sing 8 n n 
C18 C23 9XU doub 9 n n 
C12 C1 9XU sing 10 n n 
C6 C1 9XU doub 11 n y 
C6 C5 9XU sing 12 n y 
C1 C2 9XU sing 13 n y 
C10 C5 9XU sing 14 n n 
C10 N9 9XU sing 15 n n 
C21 C22 9XU sing 16 n n 
C5 C4 9XU doub 17 n y 
C15 N9 9XU sing 18 n n 
C15 C26 9XU sing 19 n n 
C23 C22 9XU sing 20 n n 
C23 O25 9XU sing 21 n n 
N9 C8 9XU sing 22 n n 
C31 C26 9XU doub 23 n y 
C31 C30 9XU sing 24 n y 
C2 C3 9XU doub 25 n y 
C26 C27 9XU sing 26 n y 
C4 C3 9XU sing 27 n y 
C4 N7 9XU sing 28 n n 
C30 C29 9XU doub 29 n y 
C8 N7 9XU sing 30 n n 
C8 O16 9XU doub 31 n n 
N7 C17 9XU sing 32 n n 
C27 C28 9XU doub 33 n y 
C29 C28 9XU sing 34 n y 
C15 H1 9XU sing 35 n n 
C15 H2 9XU sing 36 n n 
C17 H3 9XU sing 37 n n 
C17 H4 9XU sing 38 n n 
C17 H5 9XU sing 39 n n 
C20 H6 9XU sing 40 n n 
C20 H7 9XU sing 41 n n 
C21 H8 9XU sing 42 n n 
C21 H9 9XU sing 43 n n 
C22 H10 9XU sing 44 n n 
C22 H11 9XU sing 45 n n 
C28 H12 9XU sing 46 n n 
C2 H13 9XU sing 47 n n 
C3 H14 9XU sing 48 n n 
C11 H15 9XU sing 49 n n 
C11 H16 9XU sing 50 n n 
C11 H17 9XU sing 51 n n 
C27 H22 9XU sing 52 n n 
C29 H23 9XU sing 53 n n 
C30 H24 9XU sing 54 n n 
C31 H25 9XU sing 55 n n 
O25 H28 9XU sing 56 n n 
#
_atom_sites.entry_id                     7X64 
_atom_sites.fract_transf_matrix[1][1]    0.012904 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002464 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011913 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CO A 1 501 1 CO CO . 
C 3 9XU A 1 502 501 9XU LIG . 
D 4 HOH A 1 601 29 HOH HOH . 
D 4 HOH A 2 602 4 HOH HOH . 
D 4 HOH A 3 603 10 HOH HOH . 
D 4 HOH A 4 604 1 HOH HOH . 
D 4 HOH A 5 605 38 HOH HOH . 
D 4 HOH A 6 606 15 HOH HOH . 
D 4 HOH A 7 607 27 HOH HOH . 
D 4 HOH A 8 608 34 HOH HOH . 
D 4 HOH A 9 609 35 HOH HOH . 
D 4 HOH A 10 610 22 HOH HOH . 
D 4 HOH A 11 611 2 HOH HOH . 
D 4 HOH A 12 612 31 HOH HOH . 
D 4 HOH A 13 613 26 HOH HOH . 
D 4 HOH A 14 614 33 HOH HOH . 
D 4 HOH A 15 615 14 HOH HOH . 
D 4 HOH A 16 616 37 HOH HOH . 
D 4 HOH A 17 617 21 HOH HOH . 
D 4 HOH A 18 618 5 HOH HOH . 
D 4 HOH A 19 619 12 HOH HOH . 
D 4 HOH A 20 620 36 HOH HOH . 
D 4 HOH A 21 621 25 HOH HOH . 
D 4 HOH A 22 622 17 HOH HOH . 
D 4 HOH A 23 623 18 HOH HOH . 
D 4 HOH A 24 624 3 HOH HOH . 
D 4 HOH A 25 625 11 HOH HOH . 
D 4 HOH A 26 626 24 HOH HOH . 
D 4 HOH A 27 627 16 HOH HOH . 
D 4 HOH A 28 628 20 HOH HOH . 
D 4 HOH A 29 629 39 HOH HOH . 
D 4 HOH A 30 630 6 HOH HOH . 
D 4 HOH A 31 631 7 HOH HOH . 
D 4 HOH A 32 632 9 HOH HOH . 
D 4 HOH A 33 633 8 HOH HOH . 
D 4 HOH A 34 634 30 HOH HOH . 
D 4 HOH A 35 635 19 HOH HOH . 
D 4 HOH A 36 636 13 HOH HOH . 
D 4 HOH A 37 637 32 HOH HOH . 
D 4 HOH A 38 638 28 HOH HOH . 
D 4 HOH A 39 639 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 9XU . . . C 3 9.358 0.401 22.258 1 70.95 ? C10 9XU 502 A 1 
HETATM 2 C C15 9XU . . . C 3 6.949 0.837 22.626 1 71.86 ? C15 9XU 502 A 1 
HETATM 3 C C17 9XU . . . C 3 10.43 2.894 25.506 1 73.75 ? C17 9XU 502 A 1 
HETATM 4 C C20 9XU . . . C 3 17.255 -2.91 21.124 1 54.49 ? C20 9XU 502 A 1 
HETATM 5 C C21 9XU . . . C 3 17.137 -3.616 22.49 1 57.98 ? C21 9XU 502 A 1 
HETATM 6 C C22 9XU . . . C 3 16.191 -2.928 23.447 1 57.94 ? C22 9XU 502 A 1 
HETATM 7 C C26 9XU . . . C 3 6.045 0.014 23.605 1 78.66 ? C26 9XU 502 A 1 
HETATM 8 C C28 9XU . . . C 3 4.862 -0.305 25.775 1 79.65 ? C28 9XU 502 A 1 
HETATM 9 C C1 9XU . . . C 3 13.199 0.186 22.242 1 61.77 ? C1 9XU 502 A 1 
HETATM 10 C C2 9XU . . . C 3 13.45 1.059 23.34 1 66.06 ? C2 9XU 502 A 1 
HETATM 11 C C3 9XU . . . C 3 12.404 1.649 24.026 1 69.49 ? C3 9XU 502 A 1 
HETATM 12 C C4 9XU . . . C 3 11.061 1.386 23.623 1 68.89 ? C4 9XU 502 A 1 
HETATM 13 C C5 9XU . . . C 3 10.777 0.557 22.563 1 67.76 ? C5 9XU 502 A 1 
HETATM 14 C C6 9XU . . . C 3 11.881 -0.06 21.827 1 64.83 ? C6 9XU 502 A 1 
HETATM 15 C C8 9XU . . . C 3 8.755 1.837 24.05 1 73.56 ? C8 9XU 502 A 1 
HETATM 16 C C11 9XU . . . C 3 11.627 -0.985 20.63 1 59.64 ? C11 9XU 502 A 1 
HETATM 17 C C12 9XU . . . C 3 14.515 -0.356 21.537 1 57.92 ? C12 9XU 502 A 1 
HETATM 18 C C18 9XU . . . C 3 14.969 -1.824 21.48 1 56.41 ? C18 9XU 502 A 1 
HETATM 19 C C19 9XU . . . C 3 16.407 -1.651 21.045 1 53.61 ? C19 9XU 502 A 1 
HETATM 20 C C23 9XU . . . C 3 14.85 -2.628 22.806 1 65.24 ? C23 9XU 502 A 1 
HETATM 21 C C27 9XU . . . C 3 5.725 0.484 24.887 1 80.96 ? C27 9XU 502 A 1 
HETATM 22 C C29 9XU . . . C 3 4.364 -1.508 25.316 1 84.55 ? C29 9XU 502 A 1 
HETATM 23 C C30 9XU . . . C 3 4.679 -1.968 23.999 1 82.3 ? C30 9XU 502 A 1 
HETATM 24 C C31 9XU . . . C 3 5.524 -1.212 23.134 1 76.47 ? C31 9XU 502 A 1 
HETATM 25 N N7 9XU . . . C 3 10.063 2.014 24.357 1 71.19 ? N7 9XU 502 A 1 
HETATM 26 N N9 9XU . . . C 3 8.41 1.033 23.019 1 72.61 ? N9 9XU 502 A 1 
HETATM 27 O O13 9XU . . . C 3 8.872 -0.411 21.192 1 72.02 ? O13 9XU 502 A 1 
HETATM 28 O O14 9XU . . . C 3 14.46 0.106 20.256 1 52.88 ? O14 9XU 502 A 1 
HETATM 29 O O16 9XU . . . C 3 7.916 2.406 24.719 1 74.15 ? O16 9XU 502 A 1 
HETATM 30 O O24 9XU . . . C 3 16.464 -1.111 19.683 1 49.17 ? O24 9XU 502 A 1 
HETATM 31 O O25 9XU . . . C 3 14.033 -1.961 23.749 1 66.44 ? O25 9XU 502 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#