data_7X8D # _model_server_result.job_id b-aNDVrNkEEWsCGBkx5jvQ _model_server_result.datetime_utc '2024-11-09 02:11:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7X8D # _exptl.entry_id 7X8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.158 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHENYLPYRUVIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.1 _cell.angle_gamma 90 _cell.entry_id 7X8D _cell.length_a 76.969 _cell.length_b 84.18 _cell.length_c 62.075 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -21.771779 0 122.22607 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 373 A CYS 401 1_555 A SG CYS 388 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A NE2 HIS 198 A HIS 226 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc2 A OE1 GLU 366 A GLU 394 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc3 B CO CO . A CO 501 1_555 D O HOH . A HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? # _chem_comp.formula 'C9 H8 O3' _chem_comp.formula_weight 164.158 _chem_comp.id PPY _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHENYLPYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PPY doub 260 n n C1 O2 PPY sing 261 n n C1 C2 PPY sing 262 n n O2 HO2 PPY sing 263 n n C2 O3 PPY doub 264 n n C2 C3 PPY sing 265 n n C3 C1' PPY sing 266 n n C3 H31 PPY sing 267 n n C3 H32 PPY sing 268 n n C1' C2' PPY doub 269 n y C1' C6' PPY sing 270 n y C2' C3' PPY sing 271 n y C2' H2' PPY sing 272 n n C3' C4' PPY doub 273 n y C3' H3' PPY sing 274 n n C4' C5' PPY sing 275 n y C4' H4' PPY sing 276 n n C5' C6' PPY doub 277 n y C5' H5' PPY sing 278 n n C6' H6' PPY sing 279 n n # _atom_sites.entry_id 7X8D _atom_sites.fract_transf_matrix[1][1] 0.012992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002314 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016363 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 501 1 CO CO . C 3 PPY A 1 502 501 PPY LIG . D 4 HOH A 1 601 168 HOH HOH . D 4 HOH A 2 602 43 HOH HOH . D 4 HOH A 3 603 37 HOH HOH . D 4 HOH A 4 604 53 HOH HOH . D 4 HOH A 5 605 184 HOH HOH . D 4 HOH A 6 606 104 HOH HOH . D 4 HOH A 7 607 169 HOH HOH . D 4 HOH A 8 608 183 HOH HOH . D 4 HOH A 9 609 46 HOH HOH . D 4 HOH A 10 610 57 HOH HOH . D 4 HOH A 11 611 39 HOH HOH . D 4 HOH A 12 612 145 HOH HOH . D 4 HOH A 13 613 8 HOH HOH . D 4 HOH A 14 614 101 HOH HOH . D 4 HOH A 15 615 123 HOH HOH . D 4 HOH A 16 616 118 HOH HOH . D 4 HOH A 17 617 117 HOH HOH . D 4 HOH A 18 618 93 HOH HOH . D 4 HOH A 19 619 139 HOH HOH . D 4 HOH A 20 620 26 HOH HOH . D 4 HOH A 21 621 142 HOH HOH . D 4 HOH A 22 622 132 HOH HOH . D 4 HOH A 23 623 105 HOH HOH . D 4 HOH A 24 624 176 HOH HOH . D 4 HOH A 25 625 14 HOH HOH . D 4 HOH A 26 626 35 HOH HOH . D 4 HOH A 27 627 25 HOH HOH . D 4 HOH A 28 628 107 HOH HOH . D 4 HOH A 29 629 129 HOH HOH . D 4 HOH A 30 630 68 HOH HOH . D 4 HOH A 31 631 128 HOH HOH . D 4 HOH A 32 632 72 HOH HOH . D 4 HOH A 33 633 84 HOH HOH . D 4 HOH A 34 634 60 HOH HOH . D 4 HOH A 35 635 167 HOH HOH . D 4 HOH A 36 636 41 HOH HOH . D 4 HOH A 37 637 67 HOH HOH . D 4 HOH A 38 638 33 HOH HOH . D 4 HOH A 39 639 143 HOH HOH . D 4 HOH A 40 640 174 HOH HOH . D 4 HOH A 41 641 22 HOH HOH . D 4 HOH A 42 642 10 HOH HOH . D 4 HOH A 43 643 13 HOH HOH . D 4 HOH A 44 644 113 HOH HOH . D 4 HOH A 45 645 27 HOH HOH . D 4 HOH A 46 646 115 HOH HOH . D 4 HOH A 47 647 1 HOH HOH . D 4 HOH A 48 648 122 HOH HOH . D 4 HOH A 49 649 50 HOH HOH . D 4 HOH A 50 650 66 HOH HOH . D 4 HOH A 51 651 80 HOH HOH . D 4 HOH A 52 652 21 HOH HOH . D 4 HOH A 53 653 86 HOH HOH . D 4 HOH A 54 654 62 HOH HOH . D 4 HOH A 55 656 92 HOH HOH . D 4 HOH A 56 657 166 HOH HOH . D 4 HOH A 57 658 49 HOH HOH . D 4 HOH A 58 659 109 HOH HOH . D 4 HOH A 59 660 155 HOH HOH . D 4 HOH A 60 661 59 HOH HOH . D 4 HOH A 61 662 69 HOH HOH . D 4 HOH A 62 663 173 HOH HOH . D 4 HOH A 63 664 11 HOH HOH . D 4 HOH A 64 665 79 HOH HOH . D 4 HOH A 65 666 138 HOH HOH . D 4 HOH A 66 667 78 HOH HOH . D 4 HOH A 67 668 19 HOH HOH . D 4 HOH A 68 669 42 HOH HOH . D 4 HOH A 69 670 75 HOH HOH . D 4 HOH A 70 671 58 HOH HOH . D 4 HOH A 71 672 16 HOH HOH . D 4 HOH A 72 673 114 HOH HOH . D 4 HOH A 73 674 127 HOH HOH . D 4 HOH A 74 675 156 HOH HOH . D 4 HOH A 75 676 159 HOH HOH . D 4 HOH A 76 677 17 HOH HOH . D 4 HOH A 77 678 96 HOH HOH . D 4 HOH A 78 679 15 HOH HOH . D 4 HOH A 79 680 44 HOH HOH . D 4 HOH A 80 681 81 HOH HOH . D 4 HOH A 81 682 89 HOH HOH . D 4 HOH A 82 683 20 HOH HOH . D 4 HOH A 83 684 9 HOH HOH . D 4 HOH A 84 685 136 HOH HOH . D 4 HOH A 85 686 12 HOH HOH . D 4 HOH A 86 687 112 HOH HOH . D 4 HOH A 87 688 83 HOH HOH . D 4 HOH A 88 689 29 HOH HOH . D 4 HOH A 89 690 54 HOH HOH . D 4 HOH A 90 691 31 HOH HOH . D 4 HOH A 91 692 94 HOH HOH . D 4 HOH A 92 693 172 HOH HOH . D 4 HOH A 93 694 108 HOH HOH . D 4 HOH A 94 695 87 HOH HOH . D 4 HOH A 95 696 7 HOH HOH . D 4 HOH A 96 697 121 HOH HOH . D 4 HOH A 97 698 97 HOH HOH . D 4 HOH A 98 699 30 HOH HOH . D 4 HOH A 99 700 180 HOH HOH . D 4 HOH A 100 701 74 HOH HOH . D 4 HOH A 101 702 70 HOH HOH . D 4 HOH A 102 703 4 HOH HOH . D 4 HOH A 103 704 76 HOH HOH . D 4 HOH A 104 705 102 HOH HOH . D 4 HOH A 105 706 135 HOH HOH . D 4 HOH A 106 707 47 HOH HOH . D 4 HOH A 107 708 23 HOH HOH . D 4 HOH A 108 709 119 HOH HOH . D 4 HOH A 109 710 45 HOH HOH . D 4 HOH A 110 711 144 HOH HOH . D 4 HOH A 111 712 99 HOH HOH . D 4 HOH A 112 713 40 HOH HOH . D 4 HOH A 113 714 71 HOH HOH . D 4 HOH A 114 715 175 HOH HOH . D 4 HOH A 115 716 6 HOH HOH . D 4 HOH A 116 717 73 HOH HOH . D 4 HOH A 117 718 77 HOH HOH . D 4 HOH A 118 719 56 HOH HOH . D 4 HOH A 119 720 38 HOH HOH . D 4 HOH A 120 721 170 HOH HOH . D 4 HOH A 121 722 24 HOH HOH . D 4 HOH A 122 723 88 HOH HOH . D 4 HOH A 123 724 51 HOH HOH . D 4 HOH A 124 725 90 HOH HOH . D 4 HOH A 125 726 134 HOH HOH . D 4 HOH A 126 727 185 HOH HOH . D 4 HOH A 127 728 100 HOH HOH . D 4 HOH A 128 729 61 HOH HOH . D 4 HOH A 129 730 32 HOH HOH . D 4 HOH A 130 731 153 HOH HOH . D 4 HOH A 131 732 137 HOH HOH . D 4 HOH A 132 733 150 HOH HOH . D 4 HOH A 133 734 125 HOH HOH . D 4 HOH A 134 735 64 HOH HOH . D 4 HOH A 135 736 63 HOH HOH . D 4 HOH A 136 737 161 HOH HOH . D 4 HOH A 137 738 18 HOH HOH . D 4 HOH A 138 739 55 HOH HOH . D 4 HOH A 139 740 110 HOH HOH . D 4 HOH A 140 741 149 HOH HOH . D 4 HOH A 141 742 133 HOH HOH . D 4 HOH A 142 743 5 HOH HOH . D 4 HOH A 143 744 146 HOH HOH . D 4 HOH A 144 745 111 HOH HOH . D 4 HOH A 145 746 95 HOH HOH . D 4 HOH A 146 747 154 HOH HOH . D 4 HOH A 147 748 162 HOH HOH . D 4 HOH A 148 749 98 HOH HOH . D 4 HOH A 149 750 3 HOH HOH . D 4 HOH A 150 751 177 HOH HOH . D 4 HOH A 151 752 28 HOH HOH . D 4 HOH A 152 753 103 HOH HOH . D 4 HOH A 153 754 65 HOH HOH . D 4 HOH A 154 755 151 HOH HOH . D 4 HOH A 155 756 36 HOH HOH . D 4 HOH A 156 757 52 HOH HOH . D 4 HOH A 157 758 2 HOH HOH . D 4 HOH A 158 759 157 HOH HOH . D 4 HOH A 159 760 165 HOH HOH . D 4 HOH A 160 761 106 HOH HOH . D 4 HOH A 161 762 85 HOH HOH . D 4 HOH A 162 763 182 HOH HOH . D 4 HOH A 163 764 152 HOH HOH . D 4 HOH A 164 765 82 HOH HOH . D 4 HOH A 165 766 141 HOH HOH . D 4 HOH A 166 767 171 HOH HOH . D 4 HOH A 167 768 160 HOH HOH . D 4 HOH A 168 769 178 HOH HOH . D 4 HOH A 169 770 147 HOH HOH . D 4 HOH A 170 771 179 HOH HOH . D 4 HOH A 171 772 140 HOH HOH . D 4 HOH A 172 773 163 HOH HOH . D 4 HOH A 173 774 131 HOH HOH . D 4 HOH A 174 775 116 HOH HOH . D 4 HOH A 175 776 158 HOH HOH . D 4 HOH A 176 777 164 HOH HOH . D 4 HOH A 177 778 148 HOH HOH . D 4 HOH A 178 779 124 HOH HOH . D 4 HOH A 179 780 48 HOH HOH . D 4 HOH A 180 781 120 HOH HOH . D 4 HOH A 181 782 181 HOH HOH . D 4 HOH A 182 783 126 HOH HOH . D 4 HOH A 183 784 130 HOH HOH . D 4 HOH A 184 785 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PPY . . . C 3 5.854 -6.307 82.949 1 44.61 ? C1 PPY 502 A 1 HETATM 2 O O1 PPY . . . C 3 6.036 -7.551 82.889 1 46.23 ? O1 PPY 502 A 1 HETATM 3 O O2 PPY . . . C 3 6.844 -5.526 83.031 1 49.67 -1 O2 PPY 502 A 1 HETATM 4 C C2 PPY . . . C 3 4.443 -5.732 82.92 1 45.6 ? C2 PPY 502 A 1 HETATM 5 O O3 PPY . . . C 3 4.316 -4.587 83.192 1 48.87 ? O3 PPY 502 A 1 HETATM 6 C C3 PPY . . . C 3 3.267 -6.639 82.513 1 41.57 ? C3 PPY 502 A 1 HETATM 7 C C1' PPY . . . C 3 1.849 -6.169 82.881 1 40.6 ? C1' PPY 502 A 1 HETATM 8 C C2' PPY . . . C 3 1.524 -4.831 83.068 1 47.32 ? C2' PPY 502 A 1 HETATM 9 C C3' PPY . . . C 3 0.235 -4.448 83.395 1 47.03 ? C3' PPY 502 A 1 HETATM 10 C C4' PPY . . . C 3 -0.758 -5.403 83.533 1 49.84 ? C4' PPY 502 A 1 HETATM 11 C C5' PPY . . . C 3 -0.449 -6.741 83.34 1 44.02 ? C5' PPY 502 A 1 HETATM 12 C C6' PPY . . . C 3 0.845 -7.115 83.018 1 40.09 ? C6' PPY 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #