data_7X8I # _model_server_result.job_id f5uXCyEVQ3-NFq34CLBRgw _model_server_result.datetime_utc '2024-11-22 00:26:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7X8I # _exptl.entry_id 7X8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.35 _cell.angle_gamma 90 _cell.entry_id 7X8I _cell.length_a 76.434 _cell.length_b 84.197 _cell.length_c 60.524 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -19.666058 0 119.439794 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 373 A CYS 401 1_555 A SG CYS 388 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc1 A NE2 HIS 198 A HIS 226 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc2 A NE2 HIS 280 A HIS 308 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc3 A OE1 GLU 366 A GLU 394 1_555 B CO CO . A CO 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 B CO CO . A CO 501 1_555 C O04 FNO . A FNO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 B CO CO . A CO 501 1_555 C O05 FNO . A FNO 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7X8I _atom_sites.fract_transf_matrix[1][1] 0.013083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002154 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 501 501 CO CO . C 3 FNO A 1 502 601 FNO LIG . D 4 HOH A 1 601 39 HOH HOH . D 4 HOH A 2 602 53 HOH HOH . D 4 HOH A 3 603 32 HOH HOH . D 4 HOH A 4 604 24 HOH HOH . D 4 HOH A 5 605 42 HOH HOH . D 4 HOH A 6 606 62 HOH HOH . D 4 HOH A 7 607 57 HOH HOH . D 4 HOH A 8 608 5 HOH HOH . D 4 HOH A 9 609 29 HOH HOH . D 4 HOH A 10 610 73 HOH HOH . D 4 HOH A 11 611 23 HOH HOH . D 4 HOH A 12 612 22 HOH HOH . D 4 HOH A 13 613 51 HOH HOH . D 4 HOH A 14 614 9 HOH HOH . D 4 HOH A 15 615 7 HOH HOH . D 4 HOH A 16 616 69 HOH HOH . D 4 HOH A 17 617 14 HOH HOH . D 4 HOH A 18 618 15 HOH HOH . D 4 HOH A 19 619 8 HOH HOH . D 4 HOH A 20 620 72 HOH HOH . D 4 HOH A 21 621 49 HOH HOH . D 4 HOH A 22 622 3 HOH HOH . D 4 HOH A 23 623 67 HOH HOH . D 4 HOH A 24 624 47 HOH HOH . D 4 HOH A 25 625 30 HOH HOH . D 4 HOH A 26 626 44 HOH HOH . D 4 HOH A 27 627 18 HOH HOH . D 4 HOH A 28 628 21 HOH HOH . D 4 HOH A 29 629 58 HOH HOH . D 4 HOH A 30 630 26 HOH HOH . D 4 HOH A 31 631 59 HOH HOH . D 4 HOH A 32 632 54 HOH HOH . D 4 HOH A 33 633 13 HOH HOH . D 4 HOH A 34 634 4 HOH HOH . D 4 HOH A 35 635 48 HOH HOH . D 4 HOH A 36 636 50 HOH HOH . D 4 HOH A 37 637 35 HOH HOH . D 4 HOH A 38 638 38 HOH HOH . D 4 HOH A 39 639 34 HOH HOH . D 4 HOH A 40 640 56 HOH HOH . D 4 HOH A 41 641 6 HOH HOH . D 4 HOH A 42 642 33 HOH HOH . D 4 HOH A 43 643 11 HOH HOH . D 4 HOH A 44 645 37 HOH HOH . D 4 HOH A 45 646 66 HOH HOH . D 4 HOH A 46 647 63 HOH HOH . D 4 HOH A 47 648 31 HOH HOH . D 4 HOH A 48 649 40 HOH HOH . D 4 HOH A 49 650 60 HOH HOH . D 4 HOH A 50 651 25 HOH HOH . D 4 HOH A 51 652 41 HOH HOH . D 4 HOH A 52 653 10 HOH HOH . D 4 HOH A 53 654 55 HOH HOH . D 4 HOH A 54 655 64 HOH HOH . D 4 HOH A 55 656 52 HOH HOH . D 4 HOH A 56 657 19 HOH HOH . D 4 HOH A 57 658 27 HOH HOH . D 4 HOH A 58 659 36 HOH HOH . D 4 HOH A 59 660 28 HOH HOH . D 4 HOH A 60 661 45 HOH HOH . D 4 HOH A 61 662 68 HOH HOH . D 4 HOH A 62 663 16 HOH HOH . D 4 HOH A 63 664 12 HOH HOH . D 4 HOH A 64 665 61 HOH HOH . D 4 HOH A 65 666 20 HOH HOH . D 4 HOH A 66 667 70 HOH HOH . D 4 HOH A 67 668 43 HOH HOH . D 4 HOH A 68 669 2 HOH HOH . D 4 HOH A 69 670 1 HOH HOH . D 4 HOH A 70 671 17 HOH HOH . D 4 HOH A 71 672 65 HOH HOH . D 4 HOH A 72 673 46 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.081 _atom_site.Cartn_y -2.571 _atom_site.Cartn_z 78.253 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #