data_7X8R
#
_model_server_result.job_id            JVdVI2TGCrBEHXelHgvcFA 
_model_server_result.datetime_utc      '2024-11-26 13:14:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7x8r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    7X8R 
#
_exptl.entry_id    7X8R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1077.138 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2,4-bis(3-methoxy-4-thiophen-2-ylcarbonyloxy-phenyl)-1,3-bis[[4-[(2-methylpropan-2-yl)oxycarbonylamino]phenyl]carbonylamino]cyclobutane-1,3-dicarboxylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 24 N CYS 22 1_555 D SG CYS 98 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 D SG CYS 101 N CYS 99 1_555 D SG CYS 109 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 E SG CYS 203 R CYS 226 1_555 E SG CYS 273 R CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C54 H52 N4 O16 S2' 
_chem_comp.formula_weight    1077.138 
_chem_comp.id                BYI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2,4-bis(3-methoxy-4-thiophen-2-ylcarbonyloxy-phenyl)-1,3-bis[[4-[(2-methylpropan-2-yl)oxycarbonylamino]phenyl]carbonylamino]cyclobutane-1,3-dicarboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C34 C33 BYI doub 70 n y 
C34 S35 BYI sing 71 n y 
C33 C32 BYI sing 72 n y 
S35 C31 BYI sing 73 n y 
C32 C31 BYI doub 74 n y 
C31 C29 BYI sing 75 n n 
C29 O28 BYI sing 76 n n 
C29 O30 BYI doub 77 n n 
O28 C25 BYI sing 78 n n 
C25 C26 BYI doub 79 n y 
C25 C24 BYI sing 80 n y 
O36 C37 BYI sing 81 n n 
O36 C24 BYI sing 82 n n 
C26 C27 BYI sing 83 n y 
C24 C23 BYI doub 84 n y 
O52 C51 BYI doub 85 n n 
C01 C02 BYI sing 86 n n 
N50 C51 BYI sing 87 n n 
N50 C47 BYI sing 88 n n 
C51 O53 BYI sing 89 n n 
C27 C22 BYI doub 90 n y 
C23 C22 BYI sing 91 n y 
N08 C06 BYI sing 92 n n 
N08 C09 BYI sing 93 n n 
C04 C02 BYI sing 94 n n 
C46 C47 BYI doub 95 n y 
C46 C45 BYI sing 96 n y 
S71 C70 BYI sing 97 n y 
S71 C67 BYI sing 98 n y 
O05 C02 BYI sing 99 n n 
O05 C06 BYI sing 100 n n 
C73 O72 BYI sing 101 n n 
C14 C09 BYI doub 102 n y 
C14 C13 BYI sing 103 n y 
C02 C03 BYI sing 104 n n 
C56 C54 BYI sing 105 n n 
C70 C69 BYI doub 106 n y 
C47 C48 BYI sing 107 n y 
C55 C54 BYI sing 108 n n 
C22 C21 BYI sing 109 n n 
C06 O07 BYI doub 110 n n 
C09 C10 BYI sing 111 n y 
C45 C44 BYI doub 112 n y 
C13 C12 BYI doub 113 n y 
O53 C54 BYI sing 114 n n 
C54 C57 BYI sing 115 n n 
O66 C65 BYI doub 116 n n 
O72 C60 BYI sing 117 n n 
C67 C65 BYI sing 118 n n 
C67 C68 BYI doub 119 n y 
C69 C68 BYI sing 120 n y 
C10 C11 BYI doub 121 n y 
C48 C49 BYI doub 122 n y 
C65 O64 BYI sing 123 n n 
C44 C49 BYI sing 124 n y 
C44 C42 BYI sing 125 n n 
C21 C18 BYI sing 126 n n 
C21 C20 BYI sing 127 n n 
C12 C11 BYI sing 128 n y 
C12 C15 BYI sing 129 n n 
N17 C15 BYI sing 130 n n 
N17 C18 BYI sing 131 n n 
N41 C42 BYI sing 132 n n 
N41 C20 BYI sing 133 n n 
C60 C59 BYI doub 134 n y 
C60 C61 BYI sing 135 n y 
C59 C58 BYI sing 136 n y 
C42 O43 BYI doub 137 n n 
C15 O16 BYI doub 138 n n 
C18 C19 BYI sing 139 n n 
C18 C74 BYI sing 140 n n 
C20 C19 BYI sing 141 n n 
C20 C38 BYI sing 142 n n 
O64 C61 BYI sing 143 n n 
O75 C74 BYI doub 144 n n 
C61 C62 BYI doub 145 n y 
O39 C38 BYI doub 146 n n 
C58 C19 BYI sing 147 n n 
C58 C63 BYI doub 148 n y 
C74 O76 BYI sing 149 n n 
C38 O40 BYI sing 150 n n 
C62 C63 BYI sing 151 n y 
C10 H1 BYI sing 152 n n 
C13 H2 BYI sing 153 n n 
C21 H3 BYI sing 154 n n 
C26 H4 BYI sing 155 n n 
C01 H5 BYI sing 156 n n 
C01 H6 BYI sing 157 n n 
C01 H7 BYI sing 158 n n 
C03 H8 BYI sing 159 n n 
C03 H9 BYI sing 160 n n 
C03 H10 BYI sing 161 n n 
C04 H11 BYI sing 162 n n 
C04 H12 BYI sing 163 n n 
C04 H13 BYI sing 164 n n 
C11 H14 BYI sing 165 n n 
C14 H15 BYI sing 166 n n 
C19 H16 BYI sing 167 n n 
C23 H17 BYI sing 168 n n 
C27 H18 BYI sing 169 n n 
C32 H19 BYI sing 170 n n 
C33 H20 BYI sing 171 n n 
C34 H21 BYI sing 172 n n 
C37 H22 BYI sing 173 n n 
C37 H23 BYI sing 174 n n 
C37 H24 BYI sing 175 n n 
C45 H25 BYI sing 176 n n 
C46 H26 BYI sing 177 n n 
C48 H27 BYI sing 178 n n 
C49 H28 BYI sing 179 n n 
C55 H29 BYI sing 180 n n 
C55 H30 BYI sing 181 n n 
C55 H31 BYI sing 182 n n 
C56 H32 BYI sing 183 n n 
C56 H33 BYI sing 184 n n 
C56 H34 BYI sing 185 n n 
C57 H35 BYI sing 186 n n 
C57 H36 BYI sing 187 n n 
C57 H37 BYI sing 188 n n 
C59 H38 BYI sing 189 n n 
C62 H39 BYI sing 190 n n 
C63 H40 BYI sing 191 n n 
C68 H41 BYI sing 192 n n 
C69 H42 BYI sing 193 n n 
C70 H43 BYI sing 194 n n 
C73 H44 BYI sing 195 n n 
C73 H45 BYI sing 196 n n 
C73 H46 BYI sing 197 n n 
N08 H47 BYI sing 198 n n 
N17 H48 BYI sing 199 n n 
N41 H49 BYI sing 200 n n 
N50 H50 BYI sing 201 n n 
O40 H51 BYI sing 202 n n 
O76 H52 BYI sing 203 n n 
#
_atom_sites.entry_id                     7X8R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           BYI 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     601 
_pdbx_nonpoly_scheme.pdb_mon_id       BYI 
_pdbx_nonpoly_scheme.auth_mon_id      LIG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 BYI . . . F 6 133.818 138.41 179.285 1 122.33 ? C10 BYI 601 R 1 
HETATM 2 C C13 BYI . . . F 6 134.887 140.793 178.329 1 122.33 ? C13 BYI 601 R 1 
HETATM 3 C C15 BYI . . . F 6 134.061 142.075 180.385 1 122.33 ? C15 BYI 601 R 1 
HETATM 4 C C20 BYI . . . F 6 132.563 146.102 180.51 1 122.33 ? C20 BYI 601 R 1 
HETATM 5 C C21 BYI . . . F 6 133.698 145.815 179.537 1 122.33 ? C21 BYI 601 R 1 
HETATM 6 C C22 BYI . . . F 6 133.477 145.609 177.975 1 122.33 ? C22 BYI 601 R 1 
HETATM 7 C C24 BYI . . . F 6 132.216 145.814 175.903 1 122.33 ? C24 BYI 601 R 1 
HETATM 8 C C26 BYI . . . F 6 134.379 144.772 175.876 1 122.33 ? C26 BYI 601 R 1 
HETATM 9 C C01 BYI . . . F 6 132.743 132.812 176.763 1 122.33 ? C01 BYI 601 R 1 
HETATM 10 C C02 BYI . . . F 6 133.731 133.565 177.683 1 122.33 ? C02 BYI 601 R 1 
HETATM 11 C C03 BYI . . . F 6 133.422 133.163 179.141 1 122.33 ? C03 BYI 601 R 1 
HETATM 12 C C04 BYI . . . F 6 135.168 133.138 177.296 1 122.33 ? C04 BYI 601 R 1 
HETATM 13 C C06 BYI . . . F 6 134.495 135.896 177.976 1 122.33 ? C06 BYI 601 R 1 
HETATM 14 C C09 BYI . . . F 6 134.489 138.434 178.064 1 122.33 ? C09 BYI 601 R 1 
HETATM 15 C C11 BYI . . . F 6 133.682 139.578 180.028 1 122.33 ? C11 BYI 601 R 1 
HETATM 16 C C12 BYI . . . F 6 134.217 140.766 179.551 1 122.33 ? C12 BYI 601 R 1 
HETATM 17 C C14 BYI . . . F 6 135.023 139.623 177.586 1 122.33 ? C14 BYI 601 R 1 
HETATM 18 C C18 BYI . . . F 6 134.172 144.687 180.437 1 122.33 ? C18 BYI 601 R 1 
HETATM 19 C C19 BYI . . . F 6 132.881 144.762 181.161 1 122.33 ? C19 BYI 601 R 1 
HETATM 20 C C23 BYI . . . F 6 132.343 146.027 177.274 1 122.33 ? C23 BYI 601 R 1 
HETATM 21 C C25 BYI . . . F 6 133.241 145.19 175.2 1 122.33 ? C25 BYI 601 R 1 
HETATM 22 C C27 BYI . . . F 6 134.495 144.99 177.245 1 122.33 ? C27 BYI 601 R 1 
HETATM 23 C C29 BYI . . . F 6 132.595 143.684 173.531 1 122.33 ? C29 BYI 601 R 1 
HETATM 24 C C31 BYI . . . F 6 132.695 143.084 172.122 1 122.33 ? C31 BYI 601 R 1 
HETATM 25 C C32 BYI . . . F 6 133.851 142.995 171.324 1 122.33 ? C32 BYI 601 R 1 
HETATM 26 C C33 BYI . . . F 6 133.618 142.376 170.056 1 122.33 ? C33 BYI 601 R 1 
HETATM 27 C C34 BYI . . . F 6 132.29 141.965 169.833 1 122.33 ? C34 BYI 601 R 1 
HETATM 28 C C37 BYI . . . F 6 129.887 145.513 175.556 1 122.33 ? C37 BYI 601 R 1 
HETATM 29 C C38 BYI . . . F 6 133.036 147.244 181.443 1 122.33 ? C38 BYI 601 R 1 
HETATM 30 C C42 BYI . . . F 6 130.278 147.38 180.318 1 122.33 ? C42 BYI 601 R 1 
HETATM 31 C C44 BYI . . . F 6 128.974 147.596 179.476 1 122.33 ? C44 BYI 601 R 1 
HETATM 32 C C45 BYI . . . F 6 129.083 147.883 178.118 1 122.33 ? C45 BYI 601 R 1 
HETATM 33 C C46 BYI . . . F 6 127.938 148.088 177.356 1 122.33 ? C46 BYI 601 R 1 
HETATM 34 C C47 BYI . . . F 6 126.684 148.013 177.955 1 122.33 ? C47 BYI 601 R 1 
HETATM 35 C C48 BYI . . . F 6 126.574 147.737 179.316 1 122.33 ? C48 BYI 601 R 1 
HETATM 36 C C49 BYI . . . F 6 127.721 147.53 180.08 1 122.33 ? C49 BYI 601 R 1 
HETATM 37 C C51 BYI . . . F 6 124.803 149.554 177.176 1 122.33 ? C51 BYI 601 R 1 
HETATM 38 C C54 BYI . . . F 6 125.388 151.484 178.53 1 122.33 ? C54 BYI 601 R 1 
HETATM 39 C C55 BYI . . . F 6 124.533 152.646 177.971 1 122.33 ? C55 BYI 601 R 1 
HETATM 40 C C56 BYI . . . F 6 126.728 151.421 177.763 1 122.33 ? C56 BYI 601 R 1 
HETATM 41 C C57 BYI . . . F 6 125.679 151.751 180.021 1 122.33 ? C57 BYI 601 R 1 
HETATM 42 C C58 BYI . . . F 6 131.386 144.292 181.063 1 122.33 ? C58 BYI 601 R 1 
HETATM 43 C C59 BYI . . . F 6 131.062 143.398 180.036 1 122.33 ? C59 BYI 601 R 1 
HETATM 44 C C60 BYI . . . F 6 129.771 142.9 179.894 1 122.33 ? C60 BYI 601 R 1 
HETATM 45 C C61 BYI . . . F 6 128.783 143.268 180.821 1 122.33 ? C61 BYI 601 R 1 
HETATM 46 C C62 BYI . . . F 6 129.115 144.128 181.87 1 122.33 ? C62 BYI 601 R 1 
HETATM 47 C C63 BYI . . . F 6 130.415 144.624 182.016 1 122.33 ? C63 BYI 601 R 1 
HETATM 48 C C65 BYI . . . F 6 126.888 142.628 179.451 1 122.33 ? C65 BYI 601 R 1 
HETATM 49 C C67 BYI . . . F 6 126.262 141.267 179.045 1 122.33 ? C67 BYI 601 R 1 
HETATM 50 C C68 BYI . . . F 6 125.83 140.245 179.913 1 122.33 ? C68 BYI 601 R 1 
HETATM 51 C C69 BYI . . . F 6 125.295 139.1 179.239 1 122.33 ? C69 BYI 601 R 1 
HETATM 52 C C70 BYI . . . F 6 125.298 139.198 177.835 1 122.33 ? C70 BYI 601 R 1 
HETATM 53 C C73 BYI . . . F 6 130.083 142.443 177.572 1 122.33 ? C73 BYI 601 R 1 
HETATM 54 C C74 BYI . . . F 6 135.341 145.041 181.282 1 122.33 ? C74 BYI 601 R 1 
HETATM 55 N N08 BYI . . . F 6 134.63 137.19 177.286 1 122.33 ? N08 BYI 601 R 1 
HETATM 56 N N17 BYI . . . F 6 134.308 143.383 179.724 1 122.33 ? N17 BYI 601 R 1 
HETATM 57 N N41 BYI . . . F 6 131.304 146.383 179.858 1 122.33 ? N41 BYI 601 R 1 
HETATM 58 N N50 BYI . . . F 6 125.471 148.239 177.144 1 122.33 ? N50 BYI 601 R 1 
HETATM 59 O O05 BYI . . . F 6 133.525 134.97 177.498 1 122.33 ? O05 BYI 601 R 1 
HETATM 60 O O07 BYI . . . F 6 135.183 135.676 178.916 1 122.33 ? O07 BYI 601 R 1 
HETATM 61 O O16 BYI . . . F 6 133.743 142.01 181.526 1 122.33 ? O16 BYI 601 R 1 
HETATM 62 O O28 BYI . . . F 6 133.122 144.964 173.812 1 122.33 ? O28 BYI 601 R 1 
HETATM 63 O O30 BYI . . . F 6 132.065 143.065 174.393 1 122.33 ? O30 BYI 601 R 1 
HETATM 64 O O36 BYI . . . F 6 131.055 146.24 175.225 1 122.33 ? O36 BYI 601 R 1 
HETATM 65 O O39 BYI . . . F 6 133.65 148.238 180.962 1 122.33 ? O39 BYI 601 R 1 
HETATM 66 O O40 BYI . . . F 6 132.809 147.183 182.687 1 122.33 ? O40 BYI 601 R 1 
HETATM 67 O O43 BYI . . . F 6 130.404 148.022 181.309 1 122.33 ? O43 BYI 601 R 1 
HETATM 68 O O52 BYI . . . F 6 124.361 150.013 176.176 1 122.33 ? O52 BYI 601 R 1 
HETATM 69 O O53 BYI . . . F 6 124.676 150.253 178.411 1 122.33 ? O53 BYI 601 R 1 
HETATM 70 O O64 BYI . . . F 6 127.436 142.786 180.742 1 122.33 ? O64 BYI 601 R 1 
HETATM 71 O O66 BYI . . . F 6 126.922 143.525 178.678 1 122.33 ? O66 BYI 601 R 1 
HETATM 72 O O72 BYI . . . F 6 129.513 142.029 178.812 1 122.33 ? O72 BYI 601 R 1 
HETATM 73 O O75 BYI . . . F 6 136.44 145.354 180.744 1 122.33 ? O75 BYI 601 R 1 
HETATM 74 O O76 BYI . . . F 6 135.234 145.028 182.542 1 122.33 ? O76 BYI 601 R 1 
HETATM 75 S S35 BYI . . . F 6 131.437 142.387 171.231 1 122.33 ? S35 BYI 601 R 1 
HETATM 76 S S71 BYI . . . F 6 125.969 140.712 177.473 1 122.33 ? S71 BYI 601 R 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           391 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           76 
#