data_7X9I # _model_server_result.job_id SmCjpsMSMXRIUHylcRA3yQ _model_server_result.datetime_utc '2024-10-11 15:18:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":207}' # _entry.id 7X9I # _exptl.entry_id 7X9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7X9I _cell.length_a 38.239 _cell.length_b 56.004 _cell.length_c 59.34 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 C 1 GLC Y 1 SUC 2 n B FRU 2 C 2 FRU Y 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . C GLC 1 1_555 B O2 FRU . C FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? metalc ? metalc1 A O GLY 37 A GLY 37 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc2 A OE2 GLU 53 A GLU 53 1_555 G MN MN . A MN 205 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.67 ? metalc ? metalc3 A OE1 GLU 53 A GLU 53 1_555 H MN MN . A MN 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.572 ? metalc ? metalc4 A OE1 GLU 53 A GLU 53 1_555 I NA NA . A NA 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 A OE2 GLU 57 A GLU 57 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 A OE2 GLU 57 A GLU 57 1_555 H MN MN . A MN 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.708 ? metalc ? metalc7 A OE2 GLU 57 A GLU 57 1_555 I NA NA . A NA 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.871 ? metalc ? metalc8 D O2B 8DG . A 8DG 202 1_555 F MN MN . A MN 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc9 D O1A 8DG . A 8DG 202 1_555 F MN MN . A MN 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc10 D O1B 8DG . A 8DG 202 1_555 G MN MN . A MN 205 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.047 ? metalc ? metalc11 D O2B 8DG . A 8DG 202 1_555 H MN MN . A MN 206 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.577 ? metalc ? metalc12 E OP2 8OG . A 8OG 203 1_555 F MN MN . A MN 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc13 F MN MN . A MN 204 1_555 J O HOH . A HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc14 F MN MN . A MN 204 1_555 J O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc15 F MN MN . A MN 204 1_555 J O HOH . A HOH 408 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.174 ? metalc ? metalc16 G MN MN . A MN 205 1_555 J O HOH . A HOH 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc17 G MN MN . A MN 205 1_555 J O HOH . A HOH 302 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.56 ? metalc ? metalc18 G MN MN . A MN 205 1_555 J O HOH . A HOH 323 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc19 H MN MN . A MN 206 1_555 J O HOH . A HOH 307 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc20 H MN MN . A MN 206 1_555 J O HOH . A HOH 311 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc21 I NA NA . A NA 207 1_555 J O HOH . A HOH 307 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc22 I NA NA . A NA 207 1_555 J O HOH . A HOH 311 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc23 I NA NA . A NA 207 1_555 J O HOH . A HOH 355 1_555 ? B ? ? B ? ? ? ? ? ? ? 3.036 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7X9I _atom_sites.fract_transf_matrix[1][1] 0.026151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 201 1 SO4 SO4 . D 4 8DG A 1 202 25 8DG 8GT . E 5 8OG A 1 203 26 8OG 8OG . F 6 MN A 1 204 1 MN MN . G 6 MN A 1 205 2 MN MN . H 6 MN A 1 206 4 MN MN . I 7 NA A 1 207 5 NA NA . J 8 HOH A 1 301 8 HOH HOH . J 8 HOH A 2 302 106 HOH HOH . J 8 HOH A 3 303 108 HOH HOH . J 8 HOH A 4 304 18 HOH HOH . J 8 HOH A 5 305 86 HOH HOH . J 8 HOH A 6 306 112 HOH HOH . J 8 HOH A 7 307 39 HOH HOH . J 8 HOH A 8 308 122 HOH HOH . J 8 HOH A 9 309 66 HOH HOH . J 8 HOH A 10 310 78 HOH HOH . J 8 HOH A 11 311 19 HOH HOH . J 8 HOH A 12 312 76 HOH HOH . J 8 HOH A 13 313 17 HOH HOH . J 8 HOH A 14 314 128 HOH HOH . J 8 HOH A 15 315 25 HOH HOH . J 8 HOH A 16 316 5 HOH HOH . J 8 HOH A 17 317 134 HOH HOH . J 8 HOH A 18 318 53 HOH HOH . J 8 HOH A 19 319 13 HOH HOH . J 8 HOH A 20 320 7 HOH HOH . J 8 HOH A 21 321 31 HOH HOH . J 8 HOH A 22 322 82 HOH HOH . J 8 HOH A 23 323 36 HOH HOH . J 8 HOH A 24 324 49 HOH HOH . J 8 HOH A 25 325 92 HOH HOH . J 8 HOH A 26 326 34 HOH HOH . J 8 HOH A 27 327 32 HOH HOH . J 8 HOH A 28 328 4 HOH HOH . J 8 HOH A 29 329 75 HOH HOH . J 8 HOH A 30 330 11 HOH HOH . J 8 HOH A 31 331 10 HOH HOH . J 8 HOH A 32 332 33 HOH HOH . J 8 HOH A 33 333 84 HOH HOH . J 8 HOH A 34 334 2 HOH HOH . J 8 HOH A 35 335 12 HOH HOH . J 8 HOH A 36 336 94 HOH HOH . J 8 HOH A 37 337 29 HOH HOH . J 8 HOH A 38 338 30 HOH HOH . J 8 HOH A 39 339 6 HOH HOH . J 8 HOH A 40 340 77 HOH HOH . J 8 HOH A 41 341 1 HOH HOH . J 8 HOH A 42 342 64 HOH HOH . J 8 HOH A 43 343 74 HOH HOH . J 8 HOH A 44 344 79 HOH HOH . J 8 HOH A 45 345 23 HOH HOH . J 8 HOH A 46 346 3 HOH HOH . J 8 HOH A 47 347 46 HOH HOH . J 8 HOH A 48 348 96 HOH HOH . J 8 HOH A 49 349 81 HOH HOH . J 8 HOH A 50 350 22 HOH HOH . J 8 HOH A 51 351 103 HOH HOH . J 8 HOH A 52 352 109 HOH HOH . J 8 HOH A 53 353 135 HOH HOH . J 8 HOH A 54 354 27 HOH HOH . J 8 HOH A 55 355 3 HOH HOH . J 8 HOH A 56 356 142 HOH HOH . J 8 HOH A 57 357 67 HOH HOH . J 8 HOH A 58 358 147 HOH HOH . J 8 HOH A 59 359 40 HOH HOH . J 8 HOH A 60 360 146 HOH HOH . J 8 HOH A 61 361 9 HOH HOH . J 8 HOH A 62 362 37 HOH HOH . J 8 HOH A 63 363 26 HOH HOH . J 8 HOH A 64 364 89 HOH HOH . J 8 HOH A 65 365 125 HOH HOH . J 8 HOH A 66 366 21 HOH HOH . J 8 HOH A 67 367 60 HOH HOH . J 8 HOH A 68 368 100 HOH HOH . J 8 HOH A 69 369 101 HOH HOH . J 8 HOH A 70 370 62 HOH HOH . J 8 HOH A 71 371 63 HOH HOH . J 8 HOH A 72 372 68 HOH HOH . J 8 HOH A 73 373 114 HOH HOH . J 8 HOH A 74 374 14 HOH HOH . J 8 HOH A 75 375 52 HOH HOH . J 8 HOH A 76 376 133 HOH HOH . J 8 HOH A 77 377 129 HOH HOH . J 8 HOH A 78 378 105 HOH HOH . J 8 HOH A 79 379 50 HOH HOH . J 8 HOH A 80 380 44 HOH HOH . J 8 HOH A 81 381 72 HOH HOH . J 8 HOH A 82 382 41 HOH HOH . J 8 HOH A 83 383 143 HOH HOH . J 8 HOH A 84 384 83 HOH HOH . J 8 HOH A 85 385 15 HOH HOH . J 8 HOH A 86 386 102 HOH HOH . J 8 HOH A 87 387 141 HOH HOH . J 8 HOH A 88 388 54 HOH HOH . J 8 HOH A 89 389 48 HOH HOH . J 8 HOH A 90 390 58 HOH HOH . J 8 HOH A 91 391 59 HOH HOH . J 8 HOH A 92 392 98 HOH HOH . J 8 HOH A 93 393 47 HOH HOH . J 8 HOH A 94 394 139 HOH HOH . J 8 HOH A 95 395 24 HOH HOH . J 8 HOH A 96 396 57 HOH HOH . J 8 HOH A 97 397 20 HOH HOH . J 8 HOH A 98 398 85 HOH HOH . J 8 HOH A 99 399 117 HOH HOH . J 8 HOH A 100 400 107 HOH HOH . J 8 HOH A 101 401 35 HOH HOH . J 8 HOH A 102 402 43 HOH HOH . J 8 HOH A 103 403 45 HOH HOH . J 8 HOH A 104 404 80 HOH HOH . J 8 HOH A 105 405 42 HOH HOH . J 8 HOH A 106 406 131 HOH HOH . J 8 HOH A 107 407 110 HOH HOH . J 8 HOH A 108 408 27 HOH HOH . J 8 HOH A 109 409 124 HOH HOH . J 8 HOH A 110 410 65 HOH HOH . J 8 HOH A 111 411 38 HOH HOH . J 8 HOH A 112 412 113 HOH HOH . J 8 HOH A 113 413 145 HOH HOH . J 8 HOH A 114 414 91 HOH HOH . J 8 HOH A 115 415 116 HOH HOH . J 8 HOH A 116 416 126 HOH HOH . J 8 HOH A 117 417 140 HOH HOH . J 8 HOH A 118 418 56 HOH HOH . J 8 HOH A 119 419 97 HOH HOH . J 8 HOH A 120 420 127 HOH HOH . J 8 HOH A 121 421 137 HOH HOH . J 8 HOH A 122 422 71 HOH HOH . J 8 HOH A 123 423 87 HOH HOH . J 8 HOH A 124 424 70 HOH HOH . J 8 HOH A 125 425 132 HOH HOH . J 8 HOH A 126 426 144 HOH HOH . J 8 HOH A 127 427 120 HOH HOH . J 8 HOH A 128 428 95 HOH HOH . J 8 HOH A 129 429 118 HOH HOH . J 8 HOH A 130 430 28 HOH HOH . J 8 HOH A 131 431 28 HOH HOH . J 8 HOH A 132 432 121 HOH HOH . J 8 HOH A 133 433 148 HOH HOH . J 8 HOH A 134 434 136 HOH HOH . J 8 HOH A 135 435 90 HOH HOH . J 8 HOH A 136 436 61 HOH HOH . J 8 HOH A 137 437 104 HOH HOH . J 8 HOH A 138 438 115 HOH HOH . J 8 HOH A 139 439 88 HOH HOH . J 8 HOH A 140 440 93 HOH HOH . J 8 HOH A 141 441 130 HOH HOH . J 8 HOH A 142 442 99 HOH HOH . J 8 HOH A 143 443 16 HOH HOH . J 8 HOH A 144 444 73 HOH HOH . J 8 HOH A 145 445 123 HOH HOH . J 8 HOH A 146 446 55 HOH HOH . J 8 HOH A 147 447 29 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id B _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 7 _atom_site.Cartn_x -9 _atom_site.Cartn_y 3.024 _atom_site.Cartn_z 17.992 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 30.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 207 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #