data_7X9K # _model_server_result.job_id z435D1YRfE9JsewqsRpUyQ _model_server_result.datetime_utc '2024-11-28 09:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x9k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":204}' # _entry.id 7X9K # _exptl.entry_id 7X9K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7X9K _cell.length_a 38.15 _cell.length_b 55.984 _cell.length_c 59.135 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X9K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC Y 1 SUC 2 n B FRU 2 B 2 FRU Y 1 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 GLC . B GLC 1 1_555 B O2 FRU . B FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? metalc ? metalc1 A O GLY 37 A GLY 37 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc2 A OE2 GLU 53 A GLU 53 1_555 G MN MN . A MN 205 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.695 ? metalc ? metalc3 A OE1 GLU 53 A GLU 53 1_555 H MN MN . A MN 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.602 ? metalc ? metalc4 A OE1 GLU 53 A GLU 53 1_555 I NA NA . A NA 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.496 ? metalc ? metalc5 A OE2 GLU 57 A GLU 57 1_555 F MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc6 A OE2 GLU 57 A GLU 57 1_555 H MN MN . A MN 206 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.468 ? metalc ? metalc7 A OE2 GLU 57 A GLU 57 1_555 I NA NA . A NA 207 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.573 ? metalc ? metalc8 C O2B 8DG . A 8DG 201 1_555 F MN MN . A MN 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc9 C O1A 8DG . A 8DG 201 1_555 F MN MN . A MN 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc10 C O1B 8DG . A 8DG 201 1_555 G MN MN . A MN 205 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.195 ? metalc ? metalc11 C O2B 8DG . A 8DG 201 1_555 H MN MN . A MN 206 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.388 ? metalc ? metalc12 D OP2 8OG . A 8OG 202 1_555 F MN MN . A MN 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc13 F MN MN . A MN 204 1_555 J O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc14 F MN MN . A MN 204 1_555 J O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc15 F MN MN . A MN 204 1_555 J O HOH . A HOH 396 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.105 ? metalc ? metalc16 G MN MN . A MN 205 1_555 J O HOH . A HOH 322 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc17 G MN MN . A MN 205 1_555 J O HOH . A HOH 341 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc18 H MN MN . A MN 206 1_555 J O HOH . A HOH 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc19 H MN MN . A MN 206 1_555 J O HOH . A HOH 309 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc20 I NA NA . A NA 207 1_555 J O HOH . A HOH 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc21 I NA NA . A NA 207 1_555 J O HOH . A HOH 309 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7X9K _atom_sites.fract_transf_matrix[1][1] 0.026212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 8DG A 1 201 25 8DG 8GT . D 4 8OG A 1 202 26 8OG 8OG . E 5 SO4 A 1 203 1 SO4 SO4 . F 6 MN A 1 204 1 MN MN . G 6 MN A 1 205 2 MN MN . H 6 MN A 1 206 4 MN MN . I 7 NA A 1 207 5 NA NA . J 8 HOH A 1 301 77 HOH HOH . J 8 HOH A 2 302 44 HOH HOH . J 8 HOH A 3 303 75 HOH HOH . J 8 HOH A 4 304 116 HOH HOH . J 8 HOH A 5 305 89 HOH HOH . J 8 HOH A 6 306 10 HOH HOH . J 8 HOH A 7 307 119 HOH HOH . J 8 HOH A 8 308 24 HOH HOH . J 8 HOH A 9 309 21 HOH HOH . J 8 HOH A 10 310 62 HOH HOH . J 8 HOH A 11 311 79 HOH HOH . J 8 HOH A 12 312 74 HOH HOH . J 8 HOH A 13 313 8 HOH HOH . J 8 HOH A 14 314 48 HOH HOH . J 8 HOH A 15 315 92 HOH HOH . J 8 HOH A 16 316 30 HOH HOH . J 8 HOH A 17 317 90 HOH HOH . J 8 HOH A 18 318 59 HOH HOH . J 8 HOH A 19 319 82 HOH HOH . J 8 HOH A 20 320 41 HOH HOH . J 8 HOH A 21 321 71 HOH HOH . J 8 HOH A 22 322 5 HOH HOH . J 8 HOH A 23 323 3 HOH HOH . J 8 HOH A 24 324 86 HOH HOH . J 8 HOH A 25 325 67 HOH HOH . J 8 HOH A 26 326 20 HOH HOH . J 8 HOH A 27 327 56 HOH HOH . J 8 HOH A 28 328 2 HOH HOH . J 8 HOH A 29 329 96 HOH HOH . J 8 HOH A 30 330 26 HOH HOH . J 8 HOH A 31 331 22 HOH HOH . J 8 HOH A 32 332 38 HOH HOH . J 8 HOH A 33 333 36 HOH HOH . J 8 HOH A 34 334 7 HOH HOH . J 8 HOH A 35 335 34 HOH HOH . J 8 HOH A 36 336 25 HOH HOH . J 8 HOH A 37 337 18 HOH HOH . J 8 HOH A 38 338 32 HOH HOH . J 8 HOH A 39 339 37 HOH HOH . J 8 HOH A 40 340 6 HOH HOH . J 8 HOH A 41 341 35 HOH HOH . J 8 HOH A 42 342 9 HOH HOH . J 8 HOH A 43 343 58 HOH HOH . J 8 HOH A 44 344 23 HOH HOH . J 8 HOH A 45 345 106 HOH HOH . J 8 HOH A 46 346 122 HOH HOH . J 8 HOH A 47 347 29 HOH HOH . J 8 HOH A 48 348 31 HOH HOH . J 8 HOH A 49 349 19 HOH HOH . J 8 HOH A 50 350 101 HOH HOH . J 8 HOH A 51 351 88 HOH HOH . J 8 HOH A 52 352 1 HOH HOH . J 8 HOH A 53 353 3 HOH HOH . J 8 HOH A 54 354 118 HOH HOH . J 8 HOH A 55 355 110 HOH HOH . J 8 HOH A 56 356 55 HOH HOH . J 8 HOH A 57 357 15 HOH HOH . J 8 HOH A 58 358 80 HOH HOH . J 8 HOH A 59 359 52 HOH HOH . J 8 HOH A 60 360 17 HOH HOH . J 8 HOH A 61 361 57 HOH HOH . J 8 HOH A 62 362 108 HOH HOH . J 8 HOH A 63 363 123 HOH HOH . J 8 HOH A 64 364 16 HOH HOH . J 8 HOH A 65 365 51 HOH HOH . J 8 HOH A 66 366 40 HOH HOH . J 8 HOH A 67 367 45 HOH HOH . J 8 HOH A 68 368 13 HOH HOH . J 8 HOH A 69 369 84 HOH HOH . J 8 HOH A 70 370 69 HOH HOH . J 8 HOH A 71 371 53 HOH HOH . J 8 HOH A 72 372 63 HOH HOH . J 8 HOH A 73 373 61 HOH HOH . J 8 HOH A 74 374 107 HOH HOH . J 8 HOH A 75 375 50 HOH HOH . J 8 HOH A 76 376 78 HOH HOH . J 8 HOH A 77 377 125 HOH HOH . J 8 HOH A 78 378 126 HOH HOH . J 8 HOH A 79 379 42 HOH HOH . J 8 HOH A 80 380 12 HOH HOH . J 8 HOH A 81 381 70 HOH HOH . J 8 HOH A 82 382 87 HOH HOH . J 8 HOH A 83 383 46 HOH HOH . J 8 HOH A 84 384 65 HOH HOH . J 8 HOH A 85 385 115 HOH HOH . J 8 HOH A 86 386 120 HOH HOH . J 8 HOH A 87 387 91 HOH HOH . J 8 HOH A 88 388 60 HOH HOH . J 8 HOH A 89 389 4 HOH HOH . J 8 HOH A 90 390 27 HOH HOH . J 8 HOH A 91 391 112 HOH HOH . J 8 HOH A 92 392 94 HOH HOH . J 8 HOH A 93 393 93 HOH HOH . J 8 HOH A 94 394 11 HOH HOH . J 8 HOH A 95 395 28 HOH HOH . J 8 HOH A 96 396 27 HOH HOH . J 8 HOH A 97 397 117 HOH HOH . J 8 HOH A 98 398 39 HOH HOH . J 8 HOH A 99 399 102 HOH HOH . J 8 HOH A 100 400 85 HOH HOH . J 8 HOH A 101 401 128 HOH HOH . J 8 HOH A 102 402 132 HOH HOH . J 8 HOH A 103 403 129 HOH HOH . J 8 HOH A 104 404 100 HOH HOH . J 8 HOH A 105 405 49 HOH HOH . J 8 HOH A 106 406 130 HOH HOH . J 8 HOH A 107 407 111 HOH HOH . J 8 HOH A 108 408 127 HOH HOH . J 8 HOH A 109 409 114 HOH HOH . J 8 HOH A 110 410 97 HOH HOH . J 8 HOH A 111 411 73 HOH HOH . J 8 HOH A 112 412 124 HOH HOH . J 8 HOH A 113 413 109 HOH HOH . J 8 HOH A 114 414 98 HOH HOH . J 8 HOH A 115 415 83 HOH HOH . J 8 HOH A 116 416 33 HOH HOH . J 8 HOH A 117 417 131 HOH HOH . J 8 HOH A 118 418 28 HOH HOH . J 8 HOH A 119 419 72 HOH HOH . J 8 HOH A 120 420 76 HOH HOH . J 8 HOH A 121 421 95 HOH HOH . J 8 HOH A 122 422 64 HOH HOH . J 8 HOH A 123 423 54 HOH HOH . J 8 HOH A 124 424 66 HOH HOH . J 8 HOH A 125 425 29 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 6 _atom_site.Cartn_x -7.47 _atom_site.Cartn_y 3.37 _atom_site.Cartn_z 21.135 _atom_site.occupancy 0.9 _atom_site.B_iso_or_equiv 16.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #