data_7X9P # _model_server_result.job_id B4OLI32p4jYbHkf2Rs9sCQ _model_server_result.datetime_utc '2024-10-18 23:35:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7x9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7X9P # _exptl.entry_id 7X9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 694.447 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[6-methoxy-5-[3-[[6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1-benzoselenophen-5-yl]oxy]propoxy]-1-benzoselenophen-2-yl]-4-oxidanylidene-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.55 _cell.angle_gamma 90 _cell.entry_id 7X9P _cell.length_a 33.321 _cell.length_b 53.983 _cell.length_c 100.013 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7X9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H28 O10 Se2' _chem_comp.formula_weight 694.447 _chem_comp.id A8A _chem_comp.mon_nstd_flag . _chem_comp.name '4-[6-methoxy-5-[3-[[6-methoxy-2-(4-oxidanyl-4-oxidanylidene-butanoyl)-1-benzoselenophen-5-yl]oxy]propoxy]-1-benzoselenophen-2-yl]-4-oxidanylidene-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 A8A sing 1 n n C16 C15 A8A sing 2 n n C17 C18 A8A sing 3 n n C15 O21 A8A doub 4 n n C15 C14 A8A sing 5 n n C18 O19 A8A doub 6 n n C18 O20 A8A sing 7 n n C13 C14 A8A doub 8 n y C13 C12 A8A sing 9 n y C14 SE22 A8A sing 10 n y C01 O02 A8A sing 11 n n C11 C12 A8A doub 12 n y C11 C10 A8A sing 13 n y C12 C23 A8A sing 14 n y O09 C10 A8A sing 15 n n O09 C08 A8A sing 16 n n C10 C25 A8A doub 17 n y O02 C03 A8A sing 18 n n SE22 C23 A8A sing 19 n y C08 C07 A8A sing 20 n n C23 C24 A8A doub 21 n y C41 C03 A8A doub 22 n y C41 C30 A8A sing 23 n y C25 C24 A8A sing 24 n y C25 O26 A8A sing 25 n n C03 C04 A8A sing 26 n y C07 C06 A8A sing 27 n n C30 SE31 A8A sing 28 n y C30 C29 A8A doub 29 n y SE31 C32 A8A sing 30 n y O26 C27 A8A sing 31 n n C04 O05 A8A sing 32 n n C04 C28 A8A doub 33 n y C06 O05 A8A sing 34 n n C29 C28 A8A sing 35 n y C29 C40 A8A sing 36 n y O37 C36 A8A doub 37 n n C32 C40 A8A doub 38 n y C32 C33 A8A sing 39 n n O39 C33 A8A doub 40 n n O38 C36 A8A sing 41 n n C36 C35 A8A sing 42 n n C33 C34 A8A sing 43 n n C35 C34 A8A sing 44 n n C13 H1 A8A sing 45 n n C17 H2 A8A sing 46 n n C17 H3 A8A sing 47 n n C24 H4 A8A sing 48 n n C28 H5 A8A sing 49 n n C01 H6 A8A sing 50 n n C01 H7 A8A sing 51 n n C01 H8 A8A sing 52 n n C06 H9 A8A sing 53 n n C06 H10 A8A sing 54 n n C07 H11 A8A sing 55 n n C07 H12 A8A sing 56 n n C08 H13 A8A sing 57 n n C08 H14 A8A sing 58 n n C11 H15 A8A sing 59 n n C16 H16 A8A sing 60 n n C16 H17 A8A sing 61 n n C27 H18 A8A sing 62 n n C27 H19 A8A sing 63 n n C27 H20 A8A sing 64 n n C34 H21 A8A sing 65 n n C34 H22 A8A sing 66 n n C35 H23 A8A sing 67 n n C35 H24 A8A sing 68 n n C40 H25 A8A sing 69 n n C41 H26 A8A sing 70 n n O20 H27 A8A sing 71 n n O38 H28 A8A sing 72 n n # _atom_sites.entry_id 7X9P _atom_sites.fract_transf_matrix[1][1] 0.030011 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004514 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A8A A 1 401 401 A8A LIG . C 3 HOH A 1 501 9 HOH HOH . C 3 HOH A 2 502 11 HOH HOH . C 3 HOH A 3 503 1 HOH HOH . C 3 HOH A 4 504 6 HOH HOH . C 3 HOH A 5 505 10 HOH HOH . C 3 HOH A 6 506 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A8A . . . B 2 -1.093 -6.516 -1.083 0.5 35.06 ? C10 A8A 401 A 1 HETATM 2 C C13 A8A . . . B 2 -0.189 -3.103 -2.513 0.5 39.22 ? C13 A8A 401 A 1 HETATM 3 C C15 A8A . . . B 2 -0.085 -0.48 -2.845 0.5 43.17 ? C15 A8A 401 A 1 HETATM 4 C C17 A8A . . . B 2 2.102 0.007 -3.966 0.5 42.82 ? C17 A8A 401 A 1 HETATM 5 C C24 A8A . . . B 2 -2.186 -4.757 0.196 0.5 34.92 ? C24 A8A 401 A 1 HETATM 6 C C28 A8A . . . B 2 0.923 -5.683 2.096 0.5 34.92 ? C28 A8A 401 A 1 HETATM 7 C C01 A8A . . . B 2 3.249 -6.504 -1.935 0.5 37.04 ? C01 A8A 401 A 1 HETATM 8 C C03 A8A . . . B 2 2.22 -6.143 0.119 0.5 35.46 ? C03 A8A 401 A 1 HETATM 9 C C04 A8A . . . B 2 1.521 -6.592 1.242 0.5 34.95 ? C04 A8A 401 A 1 HETATM 10 C C06 A8A . . . B 2 0.187 -8.533 1.492 0.5 38.95 ? C06 A8A 401 A 1 HETATM 11 C C07 A8A . . . B 2 0.093 -9.336 0.201 0.5 34.92 ? C07 A8A 401 A 1 HETATM 12 C C08 A8A . . . B 2 -1.126 -8.921 -0.621 0.5 39.03 ? C08 A8A 401 A 1 HETATM 13 C C11 A8A . . . B 2 -0.529 -5.54 -1.89 0.5 34.92 ? C11 A8A 401 A 1 HETATM 14 C C12 A8A . . . B 2 -0.778 -4.196 -1.67 0.5 36.69 ? C12 A8A 401 A 1 HETATM 15 C C14 A8A . . . B 2 -0.534 -1.77 -2.164 0.5 41.42 ? C14 A8A 401 A 1 HETATM 16 C C16 A8A . . . B 2 0.693 -0.543 -4.155 0.5 48.83 ? C16 A8A 401 A 1 HETATM 17 C C18 A8A . . . B 2 2.782 -0.649 -2.771 0.5 47.37 ? C18 A8A 401 A 1 HETATM 18 C C23 A8A . . . B 2 -1.618 -3.805 -0.612 0.5 34.97 ? C23 A8A 401 A 1 HETATM 19 C C25 A8A . . . B 2 -1.941 -6.116 -0.021 0.5 35.47 ? C25 A8A 401 A 1 HETATM 20 C C27 A8A . . . B 2 -3.054 -6.395 2.012 0.5 37.5 ? C27 A8A 401 A 1 HETATM 21 C C29 A8A . . . B 2 1.017 -4.326 1.824 0.5 36.3 ? C29 A8A 401 A 1 HETATM 22 C C30 A8A . . . B 2 1.72 -3.875 0.684 0.5 35.03 ? C30 A8A 401 A 1 HETATM 23 C C32 A8A . . . B 2 0.579 -1.909 2.277 0.5 41.47 ? C32 A8A 401 A 1 HETATM 24 C C33 A8A . . . B 2 0.06 -0.659 2.973 0.5 44.46 ? C33 A8A 401 A 1 HETATM 25 C C34 A8A . . . B 2 -0.681 -0.79 4.298 0.5 47.9 ? C34 A8A 401 A 1 HETATM 26 C C35 A8A . . . B 2 -2.107 -0.261 4.178 0.5 44.5 ? C35 A8A 401 A 1 HETATM 27 C C36 A8A . . . B 2 -2.808 -0.81 2.937 0.5 47 ? C36 A8A 401 A 1 HETATM 28 C C40 A8A . . . B 2 0.403 -3.26 2.682 0.5 38.93 ? C40 A8A 401 A 1 HETATM 29 C C41 A8A . . . B 2 2.314 -4.781 -0.158 0.5 34.92 ? C41 A8A 401 A 1 HETATM 30 O O02 A8A . . . B 2 2.821 -7.068 -0.732 0.5 37.19 ? O02 A8A 401 A 1 HETATM 31 O O05 A8A . . . B 2 1.459 -7.97 1.499 0.5 38.46 ? O05 A8A 401 A 1 HETATM 32 O O09 A8A . . . B 2 -0.751 -7.842 -1.429 0.5 36.17 ? O09 A8A 401 A 1 HETATM 33 O O19 A8A . . . B 2 2.638 -1.878 -2.552 0.5 49.54 -1 O19 A8A 401 A 1 HETATM 34 O O20 A8A . . . B 2 3.511 0.047 -2.017 0.5 47.96 ? O20 A8A 401 A 1 HETATM 35 O O21 A8A . . . B 2 -0.334 0.568 -2.361 0.5 46.36 ? O21 A8A 401 A 1 HETATM 36 O O26 A8A . . . B 2 -2.568 -7.004 0.854 0.5 37.63 ? O26 A8A 401 A 1 HETATM 37 O O37 A8A . . . B 2 -3.52 -0.05 2.233 0.5 52.73 -1 O37 A8A 401 A 1 HETATM 38 O O38 A8A . . . B 2 -2.674 -2.02 2.625 0.5 51.35 ? O38 A8A 401 A 1 HETATM 39 O O39 A8A . . . B 2 0.229 0.405 2.49 0.5 44.39 ? O39 A8A 401 A 1 HETATM 40 SE SE22 A8A . . . B 2 -1.666 -1.935 -0.692 0.5 47.71 ? SE22 A8A 401 A 1 HETATM 41 SE SE31 A8A . . . B 2 1.589 -2.003 0.712 0.5 44.34 ? SE31 A8A 401 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #