data_7XA7 # _model_server_result.job_id 05K6EFM7OtvppdtNOxVlkw _model_server_result.datetime_utc '2025-01-28 03:44:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xa7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":601}' # _entry.id 7XA7 # _exptl.entry_id 7XA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XA7 _cell.length_a 63.943 _cell.length_b 130.849 _cell.length_c 564.829 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression G,H,O,P,W 1 1 A,B,I,J,Q,R 2 1 C,D,K,L,S,T 3 1 E,F,M,N,U,V 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 N N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 116 1_555 A SG CYS 124 A CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 327 A CYS 327 1_555 A SG CYS 344 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 513 A CYS 513 1_555 A SG CYS 525 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 18 B CYS 336 1_555 B SG CYS 43 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 B SG CYS 61 B CYS 379 1_555 B SG CYS 114 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 73 B CYS 391 1_555 B SG CYS 207 B CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 162 B CYS 480 1_555 B SG CYS 170 B CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 C SG CYS 116 C CYS 116 1_555 C SG CYS 124 C CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 C SG CYS 327 C CYS 327 1_555 C SG CYS 344 C CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 C SG CYS 513 C CYS 513 1_555 C SG CYS 525 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 D SG CYS 18 D CYS 336 1_555 D SG CYS 43 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 D SG CYS 61 D CYS 379 1_555 D SG CYS 114 D CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 D SG CYS 73 D CYS 391 1_555 D SG CYS 207 D CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 D SG CYS 162 D CYS 480 1_555 D SG CYS 170 D CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 E SG CYS 116 E CYS 116 1_555 E SG CYS 124 E CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 E SG CYS 327 E CYS 327 1_555 E SG CYS 344 E CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf17 E SG CYS 513 E CYS 513 1_555 E SG CYS 525 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf18 F SG CYS 18 F CYS 336 1_555 F SG CYS 43 F CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 F SG CYS 61 F CYS 379 1_555 F SG CYS 114 F CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf20 F SG CYS 73 F CYS 391 1_555 F SG CYS 207 F CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 F SG CYS 162 F CYS 480 1_555 F SG CYS 170 F CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 G SG CYS 116 G CYS 116 1_555 G SG CYS 124 G CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 G SG CYS 327 G CYS 327 1_555 G SG CYS 344 G CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf24 G SG CYS 513 G CYS 513 1_555 G SG CYS 525 G CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf25 H SG CYS 18 H CYS 336 1_555 H SG CYS 43 H CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf26 H SG CYS 61 H CYS 379 1_555 H SG CYS 114 H CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf27 H SG CYS 73 H CYS 391 1_555 H SG CYS 207 H CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 H SG CYS 162 H CYS 480 1_555 H SG CYS 170 H CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B ND2 ASN 25 B ASN 343 1_555 J C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 D ND2 ASN 25 D ASN 343 1_555 L C1 NAG . D NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 F ND2 ASN 25 F ASN 343 1_555 N C1 NAG . F NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 H ND2 ASN 25 H ASN 343 1_555 P C1 NAG . H NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A NE2 HIS 357 A HIS 357 1_555 I ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 A NE2 HIS 361 A HIS 361 1_555 I ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc3 A OE1 GLU 385 A GLU 385 1_555 I ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 A OE2 GLU 385 A GLU 385 1_555 I ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc5 C NE2 HIS 357 C HIS 357 1_555 K ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 C NE2 HIS 361 C HIS 361 1_555 K ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc7 C OE1 GLU 385 C GLU 385 1_555 K ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc8 C OE2 GLU 385 C GLU 385 1_555 K ZN ZN . C ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc9 K ZN ZN . C ZN 601 1_555 S O HOH . C HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc10 E NE2 HIS 357 E HIS 357 1_555 M ZN ZN . E ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc11 E NE2 HIS 361 E HIS 361 1_555 M ZN ZN . E ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc12 E OE2 GLU 385 E GLU 385 1_555 M ZN ZN . E ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc13 G NE2 HIS 357 G HIS 357 1_555 O ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc14 G NE2 HIS 361 G HIS 361 1_555 O ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc15 G OE1 GLU 385 G GLU 385 1_555 O ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc16 G OE2 GLU 385 G GLU 385 1_555 O ZN ZN . G ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7XA7 _atom_sites.fract_transf_matrix[1][1] 0.015639 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ZN A 1 601 1 ZN ZN . J 4 NAG B 1 601 601 NAG NAG . K 3 ZN C 1 601 2 ZN ZN . L 4 NAG D 1 601 601 NAG NAG . M 3 ZN E 1 601 3 ZN ZN . N 4 NAG F 1 601 601 NAG NAG . O 3 ZN G 1 601 4 ZN ZN . P 4 NAG H 1 601 601 NAG NAG . Q 5 HOH A 1 701 10 HOH HOH . Q 5 HOH A 2 702 11 HOH HOH . Q 5 HOH A 3 703 17 HOH HOH . Q 5 HOH A 4 704 3 HOH HOH . Q 5 HOH A 5 705 31 HOH HOH . Q 5 HOH A 6 706 27 HOH HOH . Q 5 HOH A 7 707 26 HOH HOH . Q 5 HOH A 8 708 5 HOH HOH . Q 5 HOH A 9 709 43 HOH HOH . R 5 HOH B 1 701 19 HOH HOH . R 5 HOH B 2 702 40 HOH HOH . R 5 HOH B 3 703 29 HOH HOH . S 5 HOH C 1 701 6 HOH HOH . S 5 HOH C 2 702 12 HOH HOH . S 5 HOH C 3 703 13 HOH HOH . S 5 HOH C 4 704 39 HOH HOH . S 5 HOH C 5 705 15 HOH HOH . S 5 HOH C 6 706 18 HOH HOH . S 5 HOH C 7 707 34 HOH HOH . S 5 HOH C 8 708 25 HOH HOH . S 5 HOH C 9 709 9 HOH HOH . S 5 HOH C 10 710 14 HOH HOH . S 5 HOH C 11 711 21 HOH HOH . T 5 HOH D 1 701 23 HOH HOH . U 5 HOH E 1 701 32 HOH HOH . U 5 HOH E 2 702 30 HOH HOH . U 5 HOH E 3 703 38 HOH HOH . U 5 HOH E 4 704 42 HOH HOH . U 5 HOH E 5 705 4 HOH HOH . U 5 HOH E 6 706 44 HOH HOH . U 5 HOH E 7 707 8 HOH HOH . U 5 HOH E 8 708 37 HOH HOH . U 5 HOH E 9 709 41 HOH HOH . V 5 HOH F 1 701 36 HOH HOH . V 5 HOH F 2 702 22 HOH HOH . V 5 HOH F 3 703 24 HOH HOH . V 5 HOH F 4 704 33 HOH HOH . V 5 HOH F 5 705 20 HOH HOH . W 5 HOH G 1 701 1 HOH HOH . W 5 HOH G 2 702 35 HOH HOH . W 5 HOH G 3 703 2 HOH HOH . W 5 HOH G 4 704 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 4 61.034 72.611 59.838 1 105.56 ? C1 NAG 601 H 1 HETATM 2 C C2 NAG . . . P 4 62.505 73.045 59.863 1 102.65 ? C2 NAG 601 H 1 HETATM 3 C C3 NAG . . . P 4 63.414 71.868 59.52 1 105.88 ? C3 NAG 601 H 1 HETATM 4 C C4 NAG . . . P 4 63.118 70.683 60.427 1 116.05 ? C4 NAG 601 H 1 HETATM 5 C C5 NAG . . . P 4 61.635 70.332 60.36 1 100.03 ? C5 NAG 601 H 1 HETATM 6 C C6 NAG . . . P 4 61.244 69.232 61.32 1 96.6 ? C6 NAG 601 H 1 HETATM 7 C C7 NAG . . . P 4 62.705 75.433 59.334 1 100.98 ? C7 NAG 601 H 1 HETATM 8 C C8 NAG . . . P 4 62.977 76.448 58.264 1 83.82 ? C8 NAG 601 H 1 HETATM 9 N N2 NAG . . . P 4 62.742 74.153 58.951 1 97.79 ? N2 NAG 601 H 1 HETATM 10 O O3 NAG . . . P 4 64.774 72.264 59.667 1 90.6 ? O3 NAG 601 H 1 HETATM 11 O O4 NAG . . . P 4 63.887 69.556 60.023 1 114.48 ? O4 NAG 601 H 1 HETATM 12 O O5 NAG . . . P 4 60.848 71.481 60.706 1 91.95 ? O5 NAG 601 H 1 HETATM 13 O O6 NAG . . . P 4 59.842 69.001 61.303 1 106.47 ? O6 NAG 601 H 1 HETATM 14 O O7 NAG . . . P 4 62.456 75.757 60.489 1 104.81 ? O7 NAG 601 H 1 # _model_server_stats.io_time_ms 224 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #