data_7XB6 # _model_server_result.job_id SCjZyhyu6m9AopPb_jrU4Q _model_server_result.datetime_utc '2024-12-26 20:01:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":602}' # _entry.id 7XB6 # _exptl.entry_id 7XB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.246 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-[(S)-(carbamoyloxy)(hydroxy)phosphoryl]adenosine" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.042 _cell.angle_gamma 90 _cell.entry_id 7XB6 _cell.length_a 54.391 _cell.length_b 245.567 _cell.length_c 96.946 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 180 A ASP 180 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 A OD1 ASP 363 A ASP 363 1_555 E MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? metalc ? metalc3 E MG MG . A MG 601 1_555 F O2A CA0 . A CA0 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc4 B OD1 ASP 180 B ASP 180 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc5 B OD2 ASP 180 B ASP 180 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc6 B OD1 ASP 363 B ASP 363 1_555 G MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc7 G MG MG . B MG 601 1_555 H O1A CA0 . B CA0 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.836 ? metalc ? metalc8 C OD1 ASP 180 C ASP 180 1_555 I MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc9 C OD1 ASP 363 C ASP 363 1_555 I MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc10 D OD1 ASP 180 D ASP 180 1_555 K MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc11 D OD2 ASP 180 D ASP 180 1_555 K MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc12 D OD1 ASP 363 D ASP 363 1_555 K MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc13 K MG MG . D MG 601 1_555 L O2A CA0 . D CA0 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'C11 H15 N6 O8 P' _chem_comp.formula_weight 390.246 _chem_comp.id CA0 _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(S)-(carbamoyloxy)(hydroxy)phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 CA0 doub 70 n y C6 N1 CA0 sing 71 n y N3 C2 CA0 sing 72 n y C2 H2 CA0 sing 73 n n C4 N3 CA0 doub 74 n y N9 C4 CA0 sing 75 n y C4 C5 CA0 sing 76 n y N7 C5 CA0 sing 77 n y C5 C6 CA0 doub 78 n y C6 N6 CA0 sing 79 n n N6 HN6 CA0 sing 80 n n N6 HN6A CA0 sing 81 n n C8 N7 CA0 doub 82 n y N9 C8 CA0 sing 83 n y C8 H8 CA0 sing 84 n n C1' N9 CA0 sing 85 n n O2A PA CA0 doub 86 n n O1A PA CA0 sing 87 n n PA O3A CA0 sing 88 n n PA O5' CA0 sing 89 n n N2B CB CA0 sing 90 n n O1B CB CA0 doub 91 n n CB O3A CA0 sing 92 n n O4' C1' CA0 sing 93 n n C2' C1' CA0 sing 94 n n C1' H1' CA0 sing 95 n n O1A HO1A CA0 sing 96 n n O2' C2' CA0 sing 97 n n C3' C2' CA0 sing 98 n n C2' H2' CA0 sing 99 n n O2' HO2' CA0 sing 100 n n N2B HN2B CA0 sing 101 n n N2B HN2A CA0 sing 102 n n O3' C3' CA0 sing 103 n n C4' C3' CA0 sing 104 n n C3' H3' CA0 sing 105 n n O3' HO3' CA0 sing 106 n n C4' C5' CA0 sing 107 n n C4' O4' CA0 sing 108 n n C4' H4' CA0 sing 109 n n O5' C5' CA0 sing 110 n n C5' H5' CA0 sing 111 n n C5' "H5'A" CA0 sing 112 n n # _atom_sites.entry_id 7XB6 _atom_sites.fract_transf_matrix[1][1] 0.018385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 601 1 MG MG . F 3 CA0 A 1 602 1 CA0 CA0 . G 2 MG B 1 601 2 MG MG . H 3 CA0 B 1 602 2 CA0 CA0 . I 2 MG C 1 601 3 MG MG . J 3 CA0 C 1 602 3 CA0 CA0 . K 2 MG D 1 601 4 MG MG . L 3 CA0 D 1 602 4 CA0 CA0 . M 4 HOH A 1 701 22 HOH HOH . M 4 HOH A 2 702 2 HOH HOH . M 4 HOH A 3 703 101 HOH HOH . M 4 HOH A 4 704 52 HOH HOH . M 4 HOH A 5 705 12 HOH HOH . M 4 HOH A 6 706 108 HOH HOH . M 4 HOH A 7 707 97 HOH HOH . M 4 HOH A 8 708 168 HOH HOH . M 4 HOH A 9 709 152 HOH HOH . M 4 HOH A 10 710 67 HOH HOH . M 4 HOH A 11 711 150 HOH HOH . M 4 HOH A 12 712 42 HOH HOH . M 4 HOH A 13 713 138 HOH HOH . M 4 HOH A 14 714 5 HOH HOH . M 4 HOH A 15 715 77 HOH HOH . M 4 HOH A 16 716 159 HOH HOH . M 4 HOH A 17 717 39 HOH HOH . M 4 HOH A 18 718 86 HOH HOH . M 4 HOH A 19 719 51 HOH HOH . M 4 HOH A 20 720 156 HOH HOH . M 4 HOH A 21 721 160 HOH HOH . M 4 HOH A 22 722 31 HOH HOH . M 4 HOH A 23 723 165 HOH HOH . M 4 HOH A 24 724 65 HOH HOH . M 4 HOH A 25 725 96 HOH HOH . M 4 HOH A 26 726 135 HOH HOH . M 4 HOH A 27 727 40 HOH HOH . M 4 HOH A 28 728 144 HOH HOH . M 4 HOH A 29 729 162 HOH HOH . M 4 HOH A 30 730 16 HOH HOH . M 4 HOH A 31 731 154 HOH HOH . M 4 HOH A 32 732 49 HOH HOH . M 4 HOH A 33 733 28 HOH HOH . M 4 HOH A 34 734 145 HOH HOH . M 4 HOH A 35 735 131 HOH HOH . M 4 HOH A 36 736 112 HOH HOH . M 4 HOH A 37 737 59 HOH HOH . M 4 HOH A 38 738 110 HOH HOH . M 4 HOH A 39 739 124 HOH HOH . M 4 HOH A 40 740 71 HOH HOH . M 4 HOH A 41 741 72 HOH HOH . N 4 HOH B 1 701 75 HOH HOH . N 4 HOH B 2 702 122 HOH HOH . N 4 HOH B 3 703 14 HOH HOH . N 4 HOH B 4 704 102 HOH HOH . N 4 HOH B 5 705 121 HOH HOH . N 4 HOH B 6 706 157 HOH HOH . N 4 HOH B 7 707 136 HOH HOH . N 4 HOH B 8 708 81 HOH HOH . N 4 HOH B 9 709 167 HOH HOH . N 4 HOH B 10 710 62 HOH HOH . N 4 HOH B 11 711 130 HOH HOH . N 4 HOH B 12 712 41 HOH HOH . N 4 HOH B 13 713 111 HOH HOH . N 4 HOH B 14 714 7 HOH HOH . N 4 HOH B 15 715 158 HOH HOH . N 4 HOH B 16 716 43 HOH HOH . N 4 HOH B 17 717 38 HOH HOH . N 4 HOH B 18 718 69 HOH HOH . N 4 HOH B 19 719 88 HOH HOH . N 4 HOH B 20 720 163 HOH HOH . N 4 HOH B 21 721 143 HOH HOH . N 4 HOH B 22 722 17 HOH HOH . N 4 HOH B 23 723 147 HOH HOH . N 4 HOH B 24 724 23 HOH HOH . N 4 HOH B 25 725 129 HOH HOH . N 4 HOH B 26 726 4 HOH HOH . N 4 HOH B 27 727 98 HOH HOH . N 4 HOH B 28 728 119 HOH HOH . N 4 HOH B 29 729 92 HOH HOH . N 4 HOH B 30 730 105 HOH HOH . N 4 HOH B 31 731 166 HOH HOH . N 4 HOH B 32 732 45 HOH HOH . N 4 HOH B 33 733 55 HOH HOH . N 4 HOH B 34 734 58 HOH HOH . N 4 HOH B 35 735 78 HOH HOH . N 4 HOH B 36 736 56 HOH HOH . N 4 HOH B 37 737 70 HOH HOH . N 4 HOH B 38 738 66 HOH HOH . N 4 HOH B 39 739 53 HOH HOH . N 4 HOH B 40 740 83 HOH HOH . N 4 HOH B 41 741 93 HOH HOH . O 4 HOH C 1 701 100 HOH HOH . O 4 HOH C 2 702 68 HOH HOH . O 4 HOH C 3 703 106 HOH HOH . O 4 HOH C 4 704 29 HOH HOH . O 4 HOH C 5 705 125 HOH HOH . O 4 HOH C 6 706 146 HOH HOH . O 4 HOH C 7 707 34 HOH HOH . O 4 HOH C 8 708 149 HOH HOH . O 4 HOH C 9 709 61 HOH HOH . O 4 HOH C 10 710 103 HOH HOH . O 4 HOH C 11 711 99 HOH HOH . O 4 HOH C 12 712 47 HOH HOH . O 4 HOH C 13 713 3 HOH HOH . O 4 HOH C 14 714 171 HOH HOH . O 4 HOH C 15 715 26 HOH HOH . O 4 HOH C 16 716 137 HOH HOH . O 4 HOH C 17 717 30 HOH HOH . O 4 HOH C 18 718 60 HOH HOH . O 4 HOH C 19 719 104 HOH HOH . O 4 HOH C 20 720 170 HOH HOH . O 4 HOH C 21 721 173 HOH HOH . O 4 HOH C 22 722 148 HOH HOH . O 4 HOH C 23 723 126 HOH HOH . O 4 HOH C 24 724 82 HOH HOH . O 4 HOH C 25 725 37 HOH HOH . O 4 HOH C 26 726 50 HOH HOH . O 4 HOH C 27 727 155 HOH HOH . O 4 HOH C 28 728 32 HOH HOH . O 4 HOH C 29 729 48 HOH HOH . O 4 HOH C 30 730 27 HOH HOH . O 4 HOH C 31 731 115 HOH HOH . O 4 HOH C 32 732 95 HOH HOH . O 4 HOH C 33 733 172 HOH HOH . O 4 HOH C 34 734 64 HOH HOH . O 4 HOH C 35 735 36 HOH HOH . O 4 HOH C 36 736 141 HOH HOH . O 4 HOH C 37 737 87 HOH HOH . O 4 HOH C 38 738 91 HOH HOH . O 4 HOH C 39 739 46 HOH HOH . O 4 HOH C 40 740 142 HOH HOH . O 4 HOH C 41 741 123 HOH HOH . O 4 HOH C 42 742 134 HOH HOH . O 4 HOH C 43 743 74 HOH HOH . O 4 HOH C 44 744 13 HOH HOH . O 4 HOH C 45 745 120 HOH HOH . O 4 HOH C 46 746 80 HOH HOH . P 4 HOH D 1 701 63 HOH HOH . P 4 HOH D 2 702 57 HOH HOH . P 4 HOH D 3 703 33 HOH HOH . P 4 HOH D 4 704 140 HOH HOH . P 4 HOH D 5 705 73 HOH HOH . P 4 HOH D 6 706 116 HOH HOH . P 4 HOH D 7 707 107 HOH HOH . P 4 HOH D 8 708 54 HOH HOH . P 4 HOH D 9 709 35 HOH HOH . P 4 HOH D 10 710 113 HOH HOH . P 4 HOH D 11 711 164 HOH HOH . P 4 HOH D 12 712 127 HOH HOH . P 4 HOH D 13 713 21 HOH HOH . P 4 HOH D 14 714 114 HOH HOH . P 4 HOH D 15 715 132 HOH HOH . P 4 HOH D 16 716 169 HOH HOH . P 4 HOH D 17 717 161 HOH HOH . P 4 HOH D 18 718 84 HOH HOH . P 4 HOH D 19 719 25 HOH HOH . P 4 HOH D 20 720 133 HOH HOH . P 4 HOH D 21 721 9 HOH HOH . P 4 HOH D 22 722 19 HOH HOH . P 4 HOH D 23 723 90 HOH HOH . P 4 HOH D 24 724 76 HOH HOH . P 4 HOH D 25 725 117 HOH HOH . P 4 HOH D 26 726 89 HOH HOH . P 4 HOH D 27 727 153 HOH HOH . P 4 HOH D 28 728 128 HOH HOH . P 4 HOH D 29 729 20 HOH HOH . P 4 HOH D 30 730 79 HOH HOH . P 4 HOH D 31 731 44 HOH HOH . P 4 HOH D 32 732 18 HOH HOH . P 4 HOH D 33 733 151 HOH HOH . P 4 HOH D 34 734 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CA0 . . . H 3 11.02 76.272 65.349 1 126.77 0 N1 CA0 602 B 1 HETATM 2 C C2 CA0 . . . H 3 10.243 77.361 65.284 1 122.05 0 C2 CA0 602 B 1 HETATM 3 N N3 CA0 . . . H 3 10.114 78.247 64.301 1 119.18 0 N3 CA0 602 B 1 HETATM 4 C C4 CA0 . . . H 3 10.911 77.927 63.272 1 135 0 C4 CA0 602 B 1 HETATM 5 C C5 CA0 . . . H 3 11.76 76.846 63.186 1 141.54 0 C5 CA0 602 B 1 HETATM 6 C C6 CA0 . . . H 3 11.809 75.976 64.29 1 134.65 0 C6 CA0 602 B 1 HETATM 7 N N6 CA0 . . . H 3 12.585 74.899 64.35 1 117.18 0 N6 CA0 602 B 1 HETATM 8 N N7 CA0 . . . H 3 12.421 76.854 61.964 1 139.38 0 N7 CA0 602 B 1 HETATM 9 C C8 CA0 . . . H 3 11.97 77.92 61.348 1 136.7 0 C8 CA0 602 B 1 HETATM 10 N N9 CA0 . . . H 3 11.046 78.606 62.093 1 138.17 0 N9 CA0 602 B 1 HETATM 11 P PA CA0 . . . H 3 7.418 79.655 56.615 1 118.3 0 PA CA0 602 B 1 HETATM 12 C CB CA0 . . . H 3 7.514 82.145 55.914 1 100.2 0 CB CA0 602 B 1 HETATM 13 C C1' CA0 . . . H 3 10.355 79.827 61.728 1 128.47 0 C1' CA0 602 B 1 HETATM 14 O O1A CA0 . . . H 3 5.93 79.7 56.494 1 108.11 0 O1A CA0 602 B 1 HETATM 15 O O1B CA0 . . . H 3 8.019 83.132 56.393 1 84.51 0 O1B CA0 602 B 1 HETATM 16 C C2' CA0 . . . H 3 11.305 80.871 61.161 1 123.3 0 C2' CA0 602 B 1 HETATM 17 O O2' CA0 . . . H 3 11.896 81.633 62.19 1 120.24 0 O2' CA0 602 B 1 HETATM 18 O O2A CA0 . . . H 3 8.14 78.412 56.221 1 102.87 0 O2A CA0 602 B 1 HETATM 19 N N2B CA0 . . . H 3 6.31 82.095 55.337 1 88.42 0 N2B CA0 602 B 1 HETATM 20 C C3' CA0 . . . H 3 10.383 81.691 60.252 1 116.27 0 C3' CA0 602 B 1 HETATM 21 O O3' CA0 . . . H 3 9.889 82.846 60.919 1 119.33 0 O3' CA0 602 B 1 HETATM 22 O O3A CA0 . . . H 3 8.091 80.939 55.906 1 123.04 0 O3A CA0 602 B 1 HETATM 23 C C4' CA0 . . . H 3 9.242 80.726 59.894 1 116.3 0 C4' CA0 602 B 1 HETATM 24 O O4' CA0 . . . H 3 9.466 79.53 60.68 1 122.31 0 O4' CA0 602 B 1 HETATM 25 C C5' CA0 . . . H 3 9.137 80.343 58.439 1 120.36 0 C5' CA0 602 B 1 HETATM 26 O O5' CA0 . . . H 3 7.783 79.928 58.147 1 122.93 0 O5' CA0 602 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 797 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 26 #