data_7XBC # _model_server_result.job_id aR_jwhXkj12K94ijH_7mKQ _model_server_result.datetime_utc '2024-11-23 17:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7XBC # _exptl.entry_id 7XBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 259.151 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XBC _cell.length_a 54.718 _cell.length_b 69.909 _cell.length_c 33.635 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 N O8 P' _chem_comp.formula_weight 259.151 _chem_comp.id GLP _chem_comp.mon_nstd_flag n _chem_comp.name 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'GLUCOSAMINE 6-PHOSPHATE;6-O-phosphono-alpha-D-glucosamine;2-amino-2-deoxy-6-O-phosphono-alpha-D-glucose;2-amino-2-deoxy-6-O-phosphono-D-glucose;2-amino-2-deoxy-6-O-phosphono-glucose' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLP sing 212 n n C1 O1 GLP sing 213 n n C1 O5 GLP sing 214 n n C1 H1 GLP sing 215 n n C2 C3 GLP sing 216 n n C2 N2 GLP sing 217 n n C2 H2 GLP sing 218 n n C3 C4 GLP sing 219 n n C3 O3 GLP sing 220 n n C3 H3 GLP sing 221 n n C4 C5 GLP sing 222 n n C4 O4 GLP sing 223 n n C4 H4 GLP sing 224 n n C5 C6 GLP sing 225 n n C5 O5 GLP sing 226 n n C5 H5 GLP sing 227 n n C6 O6 GLP sing 228 n n C6 H61 GLP sing 229 n n C6 H62 GLP sing 230 n n O1 HO1 GLP sing 231 n n N2 HN21 GLP sing 232 n n N2 HN22 GLP sing 233 n n O3 HO3 GLP sing 234 n n O4 HO4 GLP sing 235 n n O6 P GLP sing 236 n n P O1P GLP doub 237 n n P O2P GLP sing 238 n n P O3P GLP sing 239 n n O2P HOP2 GLP sing 240 n n O3P HOP3 GLP sing 241 n n # _pdbx_chem_comp_identifier.comp_id GLP _pdbx_chem_comp_identifier.identifier a-D-GlcpN6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 7XBC _atom_sites.fract_transf_matrix[1][1] 0.018276 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029731 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BZV A 1 201 200 BZV RIG . C 3 1PE A 1 202 210 1PE P6G . D 4 GLP A 1 203 220 GLP GLP . E 5 HOH A 1 301 1130 HOH HOH . E 5 HOH A 2 302 1212 HOH HOH . E 5 HOH A 3 303 1175 HOH HOH . E 5 HOH A 4 304 1057 HOH HOH . E 5 HOH A 5 305 1 HOH HOH . E 5 HOH A 6 306 1211 HOH HOH . E 5 HOH A 7 307 1025 HOH HOH . E 5 HOH A 8 308 1033 HOH HOH . E 5 HOH A 9 309 1045 HOH HOH . E 5 HOH A 10 310 1129 HOH HOH . E 5 HOH A 11 311 1185 HOH HOH . E 5 HOH A 12 312 22 HOH HOH . E 5 HOH A 13 313 14 HOH HOH . E 5 HOH A 14 314 1167 HOH HOH . E 5 HOH A 15 315 1090 HOH HOH . E 5 HOH A 16 316 1064 HOH HOH . E 5 HOH A 17 317 1125 HOH HOH . E 5 HOH A 18 318 1037 HOH HOH . E 5 HOH A 19 319 1216 HOH HOH . E 5 HOH A 20 320 1132 HOH HOH . E 5 HOH A 21 321 1006 HOH HOH . E 5 HOH A 22 322 1031 HOH HOH . E 5 HOH A 23 323 1126 HOH HOH . E 5 HOH A 24 324 1149 HOH HOH . E 5 HOH A 25 325 1218 HOH HOH . E 5 HOH A 26 326 1046 HOH HOH . E 5 HOH A 27 327 1062 HOH HOH . E 5 HOH A 28 328 5 HOH HOH . E 5 HOH A 29 329 1200 HOH HOH . E 5 HOH A 30 330 1015 HOH HOH . E 5 HOH A 31 331 1012 HOH HOH . E 5 HOH A 32 332 1079 HOH HOH . E 5 HOH A 33 333 1121 HOH HOH . E 5 HOH A 34 334 1055 HOH HOH . E 5 HOH A 35 335 1076 HOH HOH . E 5 HOH A 36 336 1213 HOH HOH . E 5 HOH A 37 337 1103 HOH HOH . E 5 HOH A 38 338 1013 HOH HOH . E 5 HOH A 39 339 1087 HOH HOH . E 5 HOH A 40 340 1089 HOH HOH . E 5 HOH A 41 341 1105 HOH HOH . E 5 HOH A 42 342 1009 HOH HOH . E 5 HOH A 43 343 1122 HOH HOH . E 5 HOH A 44 344 1022 HOH HOH . E 5 HOH A 45 345 1069 HOH HOH . E 5 HOH A 46 346 1118 HOH HOH . E 5 HOH A 47 347 1066 HOH HOH . E 5 HOH A 48 348 16 HOH HOH . E 5 HOH A 49 349 1119 HOH HOH . E 5 HOH A 50 350 1001 HOH HOH . E 5 HOH A 51 351 1128 HOH HOH . E 5 HOH A 52 352 1041 HOH HOH . E 5 HOH A 53 353 1034 HOH HOH . E 5 HOH A 54 354 1148 HOH HOH . E 5 HOH A 55 355 1084 HOH HOH . E 5 HOH A 56 356 1131 HOH HOH . E 5 HOH A 57 357 1050 HOH HOH . E 5 HOH A 58 358 1095 HOH HOH . E 5 HOH A 59 359 1073 HOH HOH . E 5 HOH A 60 360 1083 HOH HOH . E 5 HOH A 61 361 1091 HOH HOH . E 5 HOH A 62 362 1098 HOH HOH . E 5 HOH A 63 363 1002 HOH HOH . E 5 HOH A 64 364 1007 HOH HOH . E 5 HOH A 65 365 1094 HOH HOH . E 5 HOH A 66 366 1068 HOH HOH . E 5 HOH A 67 367 1030 HOH HOH . E 5 HOH A 68 368 1011 HOH HOH . E 5 HOH A 69 369 1111 HOH HOH . E 5 HOH A 70 370 1036 HOH HOH . E 5 HOH A 71 371 1106 HOH HOH . E 5 HOH A 72 372 1056 HOH HOH . E 5 HOH A 73 373 1070 HOH HOH . E 5 HOH A 74 374 1004 HOH HOH . E 5 HOH A 75 375 1044 HOH HOH . E 5 HOH A 76 376 1085 HOH HOH . E 5 HOH A 77 377 1078 HOH HOH . E 5 HOH A 78 378 1081 HOH HOH . E 5 HOH A 79 379 1020 HOH HOH . E 5 HOH A 80 380 1016 HOH HOH . E 5 HOH A 81 381 1163 HOH HOH . E 5 HOH A 82 382 1052 HOH HOH . E 5 HOH A 83 383 1108 HOH HOH . E 5 HOH A 84 384 1017 HOH HOH . E 5 HOH A 85 385 1024 HOH HOH . E 5 HOH A 86 386 17 HOH HOH . E 5 HOH A 87 387 1077 HOH HOH . E 5 HOH A 88 388 1169 HOH HOH . E 5 HOH A 89 389 1043 HOH HOH . E 5 HOH A 90 390 1093 HOH HOH . E 5 HOH A 91 391 1116 HOH HOH . E 5 HOH A 92 392 1204 HOH HOH . E 5 HOH A 93 393 1120 HOH HOH . E 5 HOH A 94 394 1040 HOH HOH . E 5 HOH A 95 395 1029 HOH HOH . E 5 HOH A 96 396 1170 HOH HOH . E 5 HOH A 97 397 1086 HOH HOH . E 5 HOH A 98 398 1117 HOH HOH . E 5 HOH A 99 399 1065 HOH HOH . E 5 HOH A 100 400 1158 HOH HOH . E 5 HOH A 101 401 1021 HOH HOH . E 5 HOH A 102 402 1099 HOH HOH . E 5 HOH A 103 403 1141 HOH HOH . E 5 HOH A 104 404 1114 HOH HOH . E 5 HOH A 105 405 1102 HOH HOH . E 5 HOH A 106 406 1072 HOH HOH . E 5 HOH A 107 407 1109 HOH HOH . E 5 HOH A 108 408 1096 HOH HOH . E 5 HOH A 109 409 1123 HOH HOH . E 5 HOH A 110 410 1189 HOH HOH . E 5 HOH A 111 411 1179 HOH HOH . E 5 HOH A 112 412 1080 HOH HOH . E 5 HOH A 113 413 1165 HOH HOH . E 5 HOH A 114 414 1107 HOH HOH . E 5 HOH A 115 415 1019 HOH HOH . E 5 HOH A 116 416 1074 HOH HOH . E 5 HOH A 117 417 1115 HOH HOH . E 5 HOH A 118 418 1207 HOH HOH . E 5 HOH A 119 419 1205 HOH HOH . E 5 HOH A 120 420 1061 HOH HOH . E 5 HOH A 121 421 1088 HOH HOH . E 5 HOH A 122 422 1100 HOH HOH . E 5 HOH A 123 423 1054 HOH HOH . E 5 HOH A 124 424 1097 HOH HOH . E 5 HOH A 125 425 1067 HOH HOH . E 5 HOH A 126 426 1026 HOH HOH . E 5 HOH A 127 427 1058 HOH HOH . E 5 HOH A 128 428 1003 HOH HOH . E 5 HOH A 129 429 1104 HOH HOH . E 5 HOH A 130 430 1217 HOH HOH . E 5 HOH A 131 431 1008 HOH HOH . E 5 HOH A 132 432 24 HOH HOH . E 5 HOH A 133 433 1124 HOH HOH . E 5 HOH A 134 434 13 HOH HOH . E 5 HOH A 135 435 1047 HOH HOH . E 5 HOH A 136 436 23 HOH HOH . E 5 HOH A 137 437 1143 HOH HOH . E 5 HOH A 138 438 1051 HOH HOH . E 5 HOH A 139 439 1023 HOH HOH . E 5 HOH A 140 440 1038 HOH HOH . E 5 HOH A 141 441 1195 HOH HOH . E 5 HOH A 142 442 1048 HOH HOH . E 5 HOH A 143 443 1210 HOH HOH . E 5 HOH A 144 444 1225 HOH HOH . E 5 HOH A 145 445 1135 HOH HOH . E 5 HOH A 146 446 1039 HOH HOH . E 5 HOH A 147 447 1127 HOH HOH . E 5 HOH A 148 448 1196 HOH HOH . E 5 HOH A 149 449 1042 HOH HOH . E 5 HOH A 150 450 1010 HOH HOH . E 5 HOH A 151 451 1224 HOH HOH . E 5 HOH A 152 452 1075 HOH HOH . E 5 HOH A 153 453 1101 HOH HOH . E 5 HOH A 154 454 1223 HOH HOH . E 5 HOH A 155 455 1206 HOH HOH . E 5 HOH A 156 456 1144 HOH HOH . E 5 HOH A 157 457 11 HOH HOH . E 5 HOH A 158 458 21 HOH HOH . E 5 HOH A 159 459 1063 HOH HOH . E 5 HOH A 160 460 2 HOH HOH . E 5 HOH A 161 461 1082 HOH HOH . E 5 HOH A 162 462 1191 HOH HOH . E 5 HOH A 163 463 1159 HOH HOH . E 5 HOH A 164 464 1028 HOH HOH . E 5 HOH A 165 465 1049 HOH HOH . E 5 HOH A 166 466 1171 HOH HOH . E 5 HOH A 167 467 1160 HOH HOH . E 5 HOH A 168 468 1183 HOH HOH . E 5 HOH A 169 469 1222 HOH HOH . E 5 HOH A 170 470 1112 HOH HOH . E 5 HOH A 171 471 6 HOH HOH . E 5 HOH A 172 472 19 HOH HOH . E 5 HOH A 173 473 1053 HOH HOH . E 5 HOH A 174 474 10 HOH HOH . E 5 HOH A 175 475 1194 HOH HOH . E 5 HOH A 176 476 1220 HOH HOH . E 5 HOH A 177 477 1155 HOH HOH . E 5 HOH A 178 478 1110 HOH HOH . E 5 HOH A 179 479 1113 HOH HOH . E 5 HOH A 180 480 1157 HOH HOH . E 5 HOH A 181 481 1215 HOH HOH . E 5 HOH A 182 482 1172 HOH HOH . E 5 HOH A 183 483 1014 HOH HOH . E 5 HOH A 184 484 1177 HOH HOH . E 5 HOH A 185 485 1174 HOH HOH . E 5 HOH A 186 486 18 HOH HOH . E 5 HOH A 187 487 9 HOH HOH . E 5 HOH A 188 488 1146 HOH HOH . E 5 HOH A 189 489 1176 HOH HOH . E 5 HOH A 190 490 1201 HOH HOH . E 5 HOH A 191 491 4 HOH HOH . E 5 HOH A 192 492 3 HOH HOH . E 5 HOH A 193 493 1166 HOH HOH . E 5 HOH A 194 494 1133 HOH HOH . E 5 HOH A 195 495 15 HOH HOH . E 5 HOH A 196 496 1134 HOH HOH . E 5 HOH A 197 497 1092 HOH HOH . E 5 HOH A 198 498 1219 HOH HOH . E 5 HOH A 199 499 1221 HOH HOH . E 5 HOH A 200 500 1137 HOH HOH . E 5 HOH A 201 501 8 HOH HOH . E 5 HOH A 202 502 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLP . . . D 4 -19.477 24.648 14.928 0.36 12.29 ? C1 GLP 203 A 1 HETATM 2 C C2 GLP . . . D 4 -19.663 24.022 13.548 0.36 10.16 ? C2 GLP 203 A 1 HETATM 3 C C3 GLP . . . D 4 -18.528 23.091 13.243 0.36 9.9 ? C3 GLP 203 A 1 HETATM 4 C C4 GLP . . . D 4 -17.268 23.918 13.251 0.36 10.77 ? C4 GLP 203 A 1 HETATM 5 C C5 GLP . . . D 4 -17.077 24.533 14.619 0.36 8.71 ? C5 GLP 203 A 1 HETATM 6 C C6 GLP . . . D 4 -15.741 25.277 14.784 0.36 10.53 ? C6 GLP 203 A 1 HETATM 7 O O1 GLP . . . D 4 -19.534 23.721 15.996 0.36 18.19 ? O1 GLP 203 A 1 HETATM 8 N N2 GLP . . . D 4 -20.971 23.445 13.423 0.1 11.45 ? N2 GLP 203 A 1 HETATM 9 O O3 GLP . . . D 4 -18.762 22.373 12.036 0.1 11.57 ? O3 GLP 203 A 1 HETATM 10 O O4 GLP . . . D 4 -16.227 23.012 13.144 0.36 13.56 ? O4 GLP 203 A 1 HETATM 11 O O5 GLP . . . D 4 -18.217 25.332 14.984 0.36 12.21 ? O5 GLP 203 A 1 HETATM 12 O O6 GLP . . . D 4 -14.957 24.81 15.914 0.36 13.7 ? O6 GLP 203 A 1 HETATM 13 P P GLP . . . D 4 -15.399 25.196 17.44 0.36 9.21 ? P GLP 203 A 1 HETATM 14 O O1P GLP . . . D 4 -15.535 26.695 17.383 0.36 12.9 ? O1P GLP 203 A 1 HETATM 15 O O2P GLP . . . D 4 -14.391 24.749 18.372 0.36 10.29 ? O2P GLP 203 A 1 HETATM 16 O O3P GLP . . . D 4 -16.71 24.563 17.677 0.36 9.52 ? O3P GLP 203 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #