data_7XC1 # _model_server_result.job_id PMA4m40LiQwOqR4n0tfPAQ _model_server_result.datetime_utc '2024-11-15 02:52:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xc1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7XC1 # _exptl.entry_id 7XC1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XC1 _cell.length_a 82.653 _cell.length_b 82.653 _cell.length_c 275.074 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XC1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 132 A ASP 124 1_555 A N NEP 133 A NEP 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C NEP 133 A NEP 125 1_555 A N ILE 134 A ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ASP 132 B ASP 124 1_555 B N NEP 133 B NEP 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale4 B C NEP 133 B NEP 125 1_555 B N ILE 134 B ILE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 167 n n N1 C6 EPE sing 168 n n N1 C9 EPE sing 169 n n C2 C3 EPE sing 170 n n C2 H21 EPE sing 171 n n C2 H22 EPE sing 172 n n C3 N4 EPE sing 173 n n C3 H31 EPE sing 174 n n C3 H32 EPE sing 175 n n N4 C5 EPE sing 176 n n N4 C7 EPE sing 177 n n C5 C6 EPE sing 178 n n C5 H51 EPE sing 179 n n C5 H52 EPE sing 180 n n C6 H61 EPE sing 181 n n C6 H62 EPE sing 182 n n C7 C8 EPE sing 183 n n C7 H71 EPE sing 184 n n C7 H72 EPE sing 185 n n C8 O8 EPE sing 186 n n C8 H81 EPE sing 187 n n C8 H82 EPE sing 188 n n O8 HO8 EPE sing 189 n n C9 C10 EPE sing 190 n n C9 H91 EPE sing 191 n n C9 H92 EPE sing 192 n n C10 S EPE sing 193 n n C10 H101 EPE sing 194 n n C10 H102 EPE sing 195 n n S O1S EPE doub 196 n n S O2S EPE doub 197 n n S O3S EPE sing 198 n n O3S HOS3 EPE sing 199 n n # _atom_sites.entry_id 7XC1 _atom_sites.fract_transf_matrix[1][1] 0.012099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5ID A 1 401 401 5ID 5ID . D 3 EPE A 1 402 501 EPE EPE . E 4 GOL A 1 403 601 GOL GOL . F 4 GOL A 1 404 701 GOL GOL . G 5 B8Z A 1 405 901 B8Z HT2 . H 6 SO4 A 1 406 1 SO4 SO4 . I 3 EPE B 1 401 401 EPE EPE . J 2 5ID B 1 402 501 5ID 5ID . K 4 GOL B 1 403 601 GOL GOL . L 4 GOL B 1 404 701 GOL GOL . M 7 HOH A 1 501 8 HOH HOH . M 7 HOH A 2 502 15 HOH HOH . M 7 HOH A 3 503 52 HOH HOH . M 7 HOH A 4 504 180 HOH HOH . M 7 HOH A 5 505 175 HOH HOH . M 7 HOH A 6 506 14 HOH HOH . M 7 HOH A 7 507 27 HOH HOH . M 7 HOH A 8 508 97 HOH HOH . M 7 HOH A 9 509 123 HOH HOH . M 7 HOH A 10 510 106 HOH HOH . M 7 HOH A 11 511 12 HOH HOH . M 7 HOH A 12 512 53 HOH HOH . M 7 HOH A 13 513 176 HOH HOH . M 7 HOH A 14 514 16 HOH HOH . M 7 HOH A 15 515 173 HOH HOH . M 7 HOH A 16 516 177 HOH HOH . M 7 HOH A 17 517 28 HOH HOH . M 7 HOH A 18 518 121 HOH HOH . M 7 HOH A 19 519 23 HOH HOH . M 7 HOH A 20 520 57 HOH HOH . M 7 HOH A 21 521 18 HOH HOH . M 7 HOH A 22 522 124 HOH HOH . M 7 HOH A 23 523 44 HOH HOH . M 7 HOH A 24 524 113 HOH HOH . M 7 HOH A 25 525 31 HOH HOH . M 7 HOH A 26 526 102 HOH HOH . M 7 HOH A 27 527 99 HOH HOH . M 7 HOH A 28 528 22 HOH HOH . M 7 HOH A 29 529 45 HOH HOH . M 7 HOH A 30 530 139 HOH HOH . M 7 HOH A 31 531 17 HOH HOH . M 7 HOH A 32 532 50 HOH HOH . M 7 HOH A 33 533 129 HOH HOH . M 7 HOH A 34 534 56 HOH HOH . M 7 HOH A 35 535 24 HOH HOH . M 7 HOH A 36 536 148 HOH HOH . M 7 HOH A 37 537 118 HOH HOH . M 7 HOH A 38 538 39 HOH HOH . M 7 HOH A 39 539 100 HOH HOH . M 7 HOH A 40 540 91 HOH HOH . M 7 HOH A 41 541 7 HOH HOH . M 7 HOH A 42 542 131 HOH HOH . M 7 HOH A 43 543 119 HOH HOH . M 7 HOH A 44 544 9 HOH HOH . M 7 HOH A 45 545 117 HOH HOH . M 7 HOH A 46 546 109 HOH HOH . M 7 HOH A 47 547 29 HOH HOH . M 7 HOH A 48 548 112 HOH HOH . M 7 HOH A 49 549 108 HOH HOH . M 7 HOH A 50 550 153 HOH HOH . M 7 HOH A 51 551 128 HOH HOH . M 7 HOH A 52 552 95 HOH HOH . M 7 HOH A 53 553 107 HOH HOH . M 7 HOH A 54 554 38 HOH HOH . M 7 HOH A 55 555 126 HOH HOH . M 7 HOH A 56 556 93 HOH HOH . M 7 HOH A 57 557 43 HOH HOH . M 7 HOH A 58 558 42 HOH HOH . M 7 HOH A 59 559 13 HOH HOH . M 7 HOH A 60 560 110 HOH HOH . M 7 HOH A 61 561 154 HOH HOH . M 7 HOH A 62 562 6 HOH HOH . M 7 HOH A 63 563 3 HOH HOH . M 7 HOH A 64 564 25 HOH HOH . M 7 HOH A 65 565 174 HOH HOH . M 7 HOH A 66 566 21 HOH HOH . M 7 HOH A 67 567 98 HOH HOH . M 7 HOH A 68 568 130 HOH HOH . M 7 HOH A 69 569 30 HOH HOH . M 7 HOH A 70 570 137 HOH HOH . M 7 HOH A 71 571 40 HOH HOH . M 7 HOH A 72 572 185 HOH HOH . M 7 HOH A 73 573 10 HOH HOH . M 7 HOH A 74 574 143 HOH HOH . M 7 HOH A 75 575 145 HOH HOH . M 7 HOH A 76 576 138 HOH HOH . M 7 HOH A 77 577 166 HOH HOH . M 7 HOH A 78 578 85 HOH HOH . M 7 HOH A 79 579 54 HOH HOH . M 7 HOH A 80 580 168 HOH HOH . M 7 HOH A 81 581 171 HOH HOH . M 7 HOH A 82 582 11 HOH HOH . M 7 HOH A 83 583 141 HOH HOH . M 7 HOH A 84 584 48 HOH HOH . M 7 HOH A 85 585 133 HOH HOH . M 7 HOH A 86 586 172 HOH HOH . M 7 HOH A 87 587 146 HOH HOH . M 7 HOH A 88 588 46 HOH HOH . M 7 HOH A 89 589 152 HOH HOH . M 7 HOH A 90 590 58 HOH HOH . M 7 HOH A 91 591 144 HOH HOH . M 7 HOH A 92 592 51 HOH HOH . M 7 HOH A 93 593 135 HOH HOH . M 7 HOH A 94 594 19 HOH HOH . M 7 HOH A 95 595 20 HOH HOH . M 7 HOH A 96 596 170 HOH HOH . M 7 HOH A 97 597 134 HOH HOH . M 7 HOH A 98 598 49 HOH HOH . M 7 HOH A 99 599 59 HOH HOH . M 7 HOH A 100 600 167 HOH HOH . M 7 HOH A 101 601 184 HOH HOH . M 7 HOH A 102 602 41 HOH HOH . M 7 HOH A 103 603 47 HOH HOH . M 7 HOH A 104 604 142 HOH HOH . M 7 HOH A 105 605 183 HOH HOH . N 7 HOH B 1 501 60 HOH HOH . N 7 HOH B 2 502 64 HOH HOH . N 7 HOH B 3 503 80 HOH HOH . N 7 HOH B 4 504 61 HOH HOH . N 7 HOH B 5 505 79 HOH HOH . N 7 HOH B 6 506 96 HOH HOH . N 7 HOH B 7 507 66 HOH HOH . N 7 HOH B 8 508 151 HOH HOH . N 7 HOH B 9 509 116 HOH HOH . N 7 HOH B 10 510 88 HOH HOH . N 7 HOH B 11 511 71 HOH HOH . N 7 HOH B 12 512 86 HOH HOH . N 7 HOH B 13 513 82 HOH HOH . N 7 HOH B 14 514 157 HOH HOH . N 7 HOH B 15 515 178 HOH HOH . N 7 HOH B 16 516 114 HOH HOH . N 7 HOH B 17 517 73 HOH HOH . N 7 HOH B 18 518 74 HOH HOH . N 7 HOH B 19 519 65 HOH HOH . N 7 HOH B 20 520 67 HOH HOH . N 7 HOH B 21 521 89 HOH HOH . N 7 HOH B 22 522 94 HOH HOH . N 7 HOH B 23 523 181 HOH HOH . N 7 HOH B 24 524 125 HOH HOH . N 7 HOH B 25 525 92 HOH HOH . N 7 HOH B 26 526 122 HOH HOH . N 7 HOH B 27 527 159 HOH HOH . N 7 HOH B 28 528 149 HOH HOH . N 7 HOH B 29 529 81 HOH HOH . N 7 HOH B 30 530 115 HOH HOH . N 7 HOH B 31 531 34 HOH HOH . N 7 HOH B 32 532 104 HOH HOH . N 7 HOH B 33 533 69 HOH HOH . N 7 HOH B 34 534 127 HOH HOH . N 7 HOH B 35 535 182 HOH HOH . N 7 HOH B 36 536 105 HOH HOH . N 7 HOH B 37 537 179 HOH HOH . N 7 HOH B 38 538 160 HOH HOH . N 7 HOH B 39 539 120 HOH HOH . N 7 HOH B 40 540 103 HOH HOH . N 7 HOH B 41 541 111 HOH HOH . N 7 HOH B 42 542 132 HOH HOH . N 7 HOH B 43 543 4 HOH HOH . N 7 HOH B 44 544 68 HOH HOH . N 7 HOH B 45 545 150 HOH HOH . N 7 HOH B 46 546 83 HOH HOH . N 7 HOH B 47 547 84 HOH HOH . N 7 HOH B 48 548 162 HOH HOH . N 7 HOH B 49 549 32 HOH HOH . N 7 HOH B 50 550 136 HOH HOH . N 7 HOH B 51 551 76 HOH HOH . N 7 HOH B 52 552 70 HOH HOH . N 7 HOH B 53 553 72 HOH HOH . N 7 HOH B 54 554 161 HOH HOH . N 7 HOH B 55 555 101 HOH HOH . N 7 HOH B 56 556 156 HOH HOH . N 7 HOH B 57 557 33 HOH HOH . N 7 HOH B 58 558 63 HOH HOH . N 7 HOH B 59 559 87 HOH HOH . N 7 HOH B 60 560 90 HOH HOH . N 7 HOH B 61 561 155 HOH HOH . N 7 HOH B 62 562 158 HOH HOH . N 7 HOH B 63 563 163 HOH HOH . N 7 HOH B 64 564 26 HOH HOH . N 7 HOH B 65 565 140 HOH HOH . N 7 HOH B 66 566 169 HOH HOH . N 7 HOH B 67 567 36 HOH HOH . N 7 HOH B 68 568 75 HOH HOH . N 7 HOH B 69 569 55 HOH HOH . N 7 HOH B 70 570 165 HOH HOH . N 7 HOH B 71 571 147 HOH HOH . N 7 HOH B 72 572 77 HOH HOH . N 7 HOH B 73 573 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 3 -2.849 -28.838 -7.568 1 79.89 ? N1 EPE 402 A 1 HETATM 2 C C2 EPE . . . D 3 -1.899 -27.765 -7.218 1 82.35 ? C2 EPE 402 A 1 HETATM 3 C C3 EPE . . . D 3 -2.255 -27.018 -5.931 1 89.6 ? C3 EPE 402 A 1 HETATM 4 N N4 EPE . . . D 3 -2.604 -27.892 -4.831 1 83.17 ? N4 EPE 402 A 1 HETATM 5 C C5 EPE . . . D 3 -3.206 -29.171 -5.139 1 82.54 ? C5 EPE 402 A 1 HETATM 6 C C6 EPE . . . D 3 -3.858 -29.109 -6.525 1 80.92 ? C6 EPE 402 A 1 HETATM 7 C C7 EPE . . . D 3 -2.275 -27.496 -3.472 1 92.06 ? C7 EPE 402 A 1 HETATM 8 C C8 EPE . . . D 3 -3.208 -28.065 -2.408 1 91.43 ? C8 EPE 402 A 1 HETATM 9 O O8 EPE . . . D 3 -3.11 -27.302 -1.224 1 100.98 ? O8 EPE 402 A 1 HETATM 10 C C9 EPE . . . D 3 -3.471 -28.506 -8.866 1 78.83 ? C9 EPE 402 A 1 HETATM 11 C C10 EPE . . . D 3 -4.129 -29.756 -9.433 1 77.09 ? C10 EPE 402 A 1 HETATM 12 S S EPE . . . D 3 -3.568 -30.235 -11.088 1 68.12 ? S EPE 402 A 1 HETATM 13 O O1S EPE . . . D 3 -4.76 -30.404 -11.916 1 68.75 ? O1S EPE 402 A 1 HETATM 14 O O2S EPE . . . D 3 -2.671 -29.219 -11.651 1 67.94 ? O2S EPE 402 A 1 HETATM 15 O O3S EPE . . . D 3 -2.848 -31.505 -10.939 1 68.88 ? O3S EPE 402 A 1 HETATM 16 H H21 EPE . . . D 3 -1.862 -27.049 -8.04 1 98.82 ? H21 EPE 402 A 1 HETATM 17 H H22 EPE . . . D 3 -0.906 -28.2 -7.108 1 98.82 ? H22 EPE 402 A 1 HETATM 18 H H31 EPE . . . D 3 -3.094 -26.352 -6.132 1 107.51 ? H31 EPE 402 A 1 HETATM 19 H H32 EPE . . . D 3 -1.404 -26.404 -5.635 1 107.51 ? H32 EPE 402 A 1 HETATM 20 H H51 EPE . . . D 3 -3.957 -29.418 -4.388 1 99.04 ? H51 EPE 402 A 1 HETATM 21 H H52 EPE . . . D 3 -2.446 -29.952 -5.122 1 99.04 ? H52 EPE 402 A 1 HETATM 22 H H61 EPE . . . D 3 -4.614 -28.325 -6.537 1 97.1 ? H61 EPE 402 A 1 HETATM 23 H H62 EPE . . . D 3 -4.354 -30.056 -6.737 1 97.1 ? H62 EPE 402 A 1 HETATM 24 H H71 EPE . . . D 3 -2.301 -26.408 -3.411 1 110.47 ? H71 EPE 402 A 1 HETATM 25 H H72 EPE . . . D 3 -1.258 -27.82 -3.252 1 110.47 ? H72 EPE 402 A 1 HETATM 26 H H81 EPE . . . D 3 -2.941 -29.101 -2.2 1 109.71 ? H81 EPE 402 A 1 HETATM 27 H H82 EPE . . . D 3 -4.235 -28.05 -2.772 1 109.71 ? H82 EPE 402 A 1 HETATM 28 H HO8 EPE . . . D 3 -2.383 -26.651 -1.315 1 121.18 ? HO8 EPE 402 A 1 HETATM 29 H H91 EPE . . . D 3 -4.215 -27.721 -8.734 1 94.6 ? H91 EPE 402 A 1 HETATM 30 H H92 EPE . . . D 3 -2.714 -28.137 -9.559 1 94.6 ? H92 EPE 402 A 1 HETATM 31 H H101 EPE . . . D 3 -3.939 -30.585 -8.752 1 92.51 ? H101 EPE 402 A 1 HETATM 32 H H102 EPE . . . D 3 -5.206 -29.592 -9.469 1 92.51 ? H102 EPE 402 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #