data_7XC9 # _model_server_result.job_id Ro6x-hjcuIQEifsP4PN7BA _model_server_result.datetime_utc '2025-03-05 04:14:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xc9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7XC9 # _exptl.entry_id 7XC9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XC9 _cell.length_a 39.789 _cell.length_b 49.251 _cell.length_c 77.574 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XC9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 B FE HEM . A HEM 201 1_555 C O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7XC9 _atom_sites.fract_transf_matrix[1][1] 0.025133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 201 HEM HEM . C 3 HOH A 1 301 23 HOH HOH . C 3 HOH A 2 302 136 HOH HOH . C 3 HOH A 3 303 59 HOH HOH . C 3 HOH A 4 304 17 HOH HOH . C 3 HOH A 5 305 16 HOH HOH . C 3 HOH A 6 306 56 HOH HOH . C 3 HOH A 7 307 57 HOH HOH . C 3 HOH A 8 308 123 HOH HOH . C 3 HOH A 9 309 10 HOH HOH . C 3 HOH A 10 310 9 HOH HOH . C 3 HOH A 11 311 107 HOH HOH . C 3 HOH A 12 312 98 HOH HOH . C 3 HOH A 13 313 124 HOH HOH . C 3 HOH A 14 314 130 HOH HOH . C 3 HOH A 15 315 7 HOH HOH . C 3 HOH A 16 316 117 HOH HOH . C 3 HOH A 17 317 104 HOH HOH . C 3 HOH A 18 318 118 HOH HOH . C 3 HOH A 19 319 48 HOH HOH . C 3 HOH A 20 320 76 HOH HOH . C 3 HOH A 21 321 18 HOH HOH . C 3 HOH A 22 322 50 HOH HOH . C 3 HOH A 23 323 87 HOH HOH . C 3 HOH A 24 324 66 HOH HOH . C 3 HOH A 25 325 31 HOH HOH . C 3 HOH A 26 326 93 HOH HOH . C 3 HOH A 27 327 92 HOH HOH . C 3 HOH A 28 328 121 HOH HOH . C 3 HOH A 29 329 134 HOH HOH . C 3 HOH A 30 330 72 HOH HOH . C 3 HOH A 31 331 11 HOH HOH . C 3 HOH A 32 332 49 HOH HOH . C 3 HOH A 33 333 20 HOH HOH . C 3 HOH A 34 334 5 HOH HOH . C 3 HOH A 35 335 2 HOH HOH . C 3 HOH A 36 336 61 HOH HOH . C 3 HOH A 37 337 40 HOH HOH . C 3 HOH A 38 338 8 HOH HOH . C 3 HOH A 39 339 28 HOH HOH . C 3 HOH A 40 340 91 HOH HOH . C 3 HOH A 41 341 14 HOH HOH . C 3 HOH A 42 342 65 HOH HOH . C 3 HOH A 43 343 90 HOH HOH . C 3 HOH A 44 344 79 HOH HOH . C 3 HOH A 45 345 34 HOH HOH . C 3 HOH A 46 346 97 HOH HOH . C 3 HOH A 47 347 36 HOH HOH . C 3 HOH A 48 348 138 HOH HOH . C 3 HOH A 49 349 88 HOH HOH . C 3 HOH A 50 350 70 HOH HOH . C 3 HOH A 51 351 96 HOH HOH . C 3 HOH A 52 352 24 HOH HOH . C 3 HOH A 53 353 1 HOH HOH . C 3 HOH A 54 354 74 HOH HOH . C 3 HOH A 55 355 140 HOH HOH . C 3 HOH A 56 356 4 HOH HOH . C 3 HOH A 57 357 45 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 143 HOH HOH . C 3 HOH A 60 360 19 HOH HOH . C 3 HOH A 61 361 100 HOH HOH . C 3 HOH A 62 362 6 HOH HOH . C 3 HOH A 63 363 99 HOH HOH . C 3 HOH A 64 364 113 HOH HOH . C 3 HOH A 65 365 12 HOH HOH . C 3 HOH A 66 366 53 HOH HOH . C 3 HOH A 67 367 3 HOH HOH . C 3 HOH A 68 368 125 HOH HOH . C 3 HOH A 69 369 22 HOH HOH . C 3 HOH A 70 370 55 HOH HOH . C 3 HOH A 71 371 30 HOH HOH . C 3 HOH A 72 372 122 HOH HOH . C 3 HOH A 73 373 77 HOH HOH . C 3 HOH A 74 374 119 HOH HOH . C 3 HOH A 75 375 38 HOH HOH . C 3 HOH A 76 376 26 HOH HOH . C 3 HOH A 77 377 131 HOH HOH . C 3 HOH A 78 378 94 HOH HOH . C 3 HOH A 79 379 129 HOH HOH . C 3 HOH A 80 380 35 HOH HOH . C 3 HOH A 81 381 101 HOH HOH . C 3 HOH A 82 382 80 HOH HOH . C 3 HOH A 83 383 46 HOH HOH . C 3 HOH A 84 384 27 HOH HOH . C 3 HOH A 85 385 13 HOH HOH . C 3 HOH A 86 386 33 HOH HOH . C 3 HOH A 87 387 29 HOH HOH . C 3 HOH A 88 388 137 HOH HOH . C 3 HOH A 89 389 32 HOH HOH . C 3 HOH A 90 390 62 HOH HOH . C 3 HOH A 91 391 86 HOH HOH . C 3 HOH A 92 392 63 HOH HOH . C 3 HOH A 93 393 133 HOH HOH . C 3 HOH A 94 394 43 HOH HOH . C 3 HOH A 95 395 78 HOH HOH . C 3 HOH A 96 396 112 HOH HOH . C 3 HOH A 97 397 128 HOH HOH . C 3 HOH A 98 398 111 HOH HOH . C 3 HOH A 99 399 60 HOH HOH . C 3 HOH A 100 400 132 HOH HOH . C 3 HOH A 101 401 115 HOH HOH . C 3 HOH A 102 402 25 HOH HOH . C 3 HOH A 103 403 44 HOH HOH . C 3 HOH A 104 404 51 HOH HOH . C 3 HOH A 105 405 135 HOH HOH . C 3 HOH A 106 406 126 HOH HOH . C 3 HOH A 107 407 39 HOH HOH . C 3 HOH A 108 408 41 HOH HOH . C 3 HOH A 109 409 127 HOH HOH . C 3 HOH A 110 410 64 HOH HOH . C 3 HOH A 111 411 116 HOH HOH . C 3 HOH A 112 412 83 HOH HOH . C 3 HOH A 113 413 109 HOH HOH . C 3 HOH A 114 414 108 HOH HOH . C 3 HOH A 115 415 85 HOH HOH . C 3 HOH A 116 416 69 HOH HOH . C 3 HOH A 117 417 145 HOH HOH . C 3 HOH A 118 418 139 HOH HOH . C 3 HOH A 119 419 68 HOH HOH . C 3 HOH A 120 420 110 HOH HOH . C 3 HOH A 121 421 102 HOH HOH . C 3 HOH A 122 422 37 HOH HOH . C 3 HOH A 123 423 106 HOH HOH . C 3 HOH A 124 424 142 HOH HOH . C 3 HOH A 125 425 21 HOH HOH . C 3 HOH A 126 426 84 HOH HOH . C 3 HOH A 127 427 82 HOH HOH . C 3 HOH A 128 428 81 HOH HOH . C 3 HOH A 129 429 42 HOH HOH . C 3 HOH A 130 430 141 HOH HOH . C 3 HOH A 131 431 114 HOH HOH . C 3 HOH A 132 432 95 HOH HOH . C 3 HOH A 133 433 67 HOH HOH . C 3 HOH A 134 434 54 HOH HOH . C 3 HOH A 135 435 75 HOH HOH . C 3 HOH A 136 436 105 HOH HOH . C 3 HOH A 137 437 15 HOH HOH . C 3 HOH A 138 438 73 HOH HOH . C 3 HOH A 139 439 89 HOH HOH . C 3 HOH A 140 440 71 HOH HOH . C 3 HOH A 141 441 144 HOH HOH . C 3 HOH A 142 442 103 HOH HOH . C 3 HOH A 143 443 120 HOH HOH . C 3 HOH A 144 444 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 6.315 9.56 7.435 1 12.68 ? CHA HEM 201 A 1 HETATM 2 C CHB HEM . . . B 2 4.952 7.026 3.554 1 9.33 ? CHB HEM 201 A 1 HETATM 3 C CHC HEM . . . B 2 4.985 3.007 6.274 1 11.2 ? CHC HEM 201 A 1 HETATM 4 C CHD HEM . . . B 2 6.408 5.541 10.14 1 9.6 ? CHD HEM 201 A 1 HETATM 5 C C1A HEM . . . B 2 5.961 9.206 6.153 1 10.02 ? C1A HEM 201 A 1 HETATM 6 C C2A HEM . . . B 2 5.886 10.115 5.031 1 9.53 ? C2A HEM 201 A 1 HETATM 7 C C3A HEM . . . B 2 5.506 9.425 3.961 1 10.79 ? C3A HEM 201 A 1 HETATM 8 C C4A HEM . . . B 2 5.328 8.045 4.369 1 9.07 ? C4A HEM 201 A 1 HETATM 9 C CMA HEM . . . B 2 5.301 9.984 2.544 1 8.69 ? CMA HEM 201 A 1 HETATM 10 C CAA HEM . . . B 2 6.198 11.622 5.085 1 8.28 ? CAA HEM 201 A 1 HETATM 11 C CBA HEM . . . B 2 7.54 11.887 4.404 1 8.6 ? CBA HEM 201 A 1 HETATM 12 C CGA HEM . . . B 2 8.655 11.096 5.04 1 12.48 ? CGA HEM 201 A 1 HETATM 13 O O1A HEM . . . B 2 8.969 11.345 6.235 1 10.98 ? O1A HEM 201 A 1 HETATM 14 O O2A HEM . . . B 2 9.236 10.228 4.332 1 11.34 ? O2A HEM 201 A 1 HETATM 15 C C1B HEM . . . B 2 4.838 5.722 3.963 1 12.13 ? C1B HEM 201 A 1 HETATM 16 C C2B HEM . . . B 2 4.421 4.629 3.123 1 10.46 ? C2B HEM 201 A 1 HETATM 17 C C3B HEM . . . B 2 4.437 3.509 3.868 1 9.54 ? C3B HEM 201 A 1 HETATM 18 C C4B HEM . . . B 2 4.841 3.883 5.214 1 8.97 ? C4B HEM 201 A 1 HETATM 19 C CMB HEM . . . B 2 4.066 4.791 1.629 1 8.47 ? CMB HEM 201 A 1 HETATM 20 C CAB HEM . . . B 2 4.069 2.05 3.504 1 7.92 ? CAB HEM 201 A 1 HETATM 21 C CBB HEM . . . B 2 3.178 1.721 2.551 1 10.12 ? CBB HEM 201 A 1 HETATM 22 C C1C HEM . . . B 2 5.296 3.345 7.584 1 8.69 ? C1C HEM 201 A 1 HETATM 23 C C2C HEM . . . B 2 5.201 2.48 8.745 1 9.94 ? C2C HEM 201 A 1 HETATM 24 C C3C HEM . . . B 2 5.597 3.189 9.817 1 8.72 ? C3C HEM 201 A 1 HETATM 25 C C4C HEM . . . B 2 5.946 4.514 9.352 1 10.87 ? C4C HEM 201 A 1 HETATM 26 C CMC HEM . . . B 2 4.719 1.009 8.672 1 8.66 ? CMC HEM 201 A 1 HETATM 27 C CAC HEM . . . B 2 5.692 2.796 11.308 1 9.57 ? CAC HEM 201 A 1 HETATM 28 C CBC HEM . . . B 2 5.22 1.641 11.808 1 10.05 ? CBC HEM 201 A 1 HETATM 29 C C1D HEM . . . B 2 6.465 6.85 9.743 1 10.26 ? C1D HEM 201 A 1 HETATM 30 C C2D HEM . . . B 2 6.737 7.969 10.619 1 12.34 ? C2D HEM 201 A 1 HETATM 31 C C3D HEM . . . B 2 6.704 9.08 9.888 1 10.76 ? C3D HEM 201 A 1 HETATM 32 C C4D HEM . . . B 2 6.427 8.71 8.504 1 10.99 ? C4D HEM 201 A 1 HETATM 33 C CMD HEM . . . B 2 6.991 7.881 12.146 1 11.52 ? CMD HEM 201 A 1 HETATM 34 C CAD HEM . . . B 2 6.918 10.503 10.439 1 13.87 ? CAD HEM 201 A 1 HETATM 35 C CBD HEM . . . B 2 5.545 10.987 10.897 1 16.81 ? CBD HEM 201 A 1 HETATM 36 C CGD HEM . . . B 2 5.667 12.401 11.412 1 29.95 ? CGD HEM 201 A 1 HETATM 37 O O1D HEM . . . B 2 6.492 12.642 12.329 1 35.11 ? O1D HEM 201 A 1 HETATM 38 O O2D HEM . . . B 2 4.94 13.291 10.905 1 28.72 ? O2D HEM 201 A 1 HETATM 39 N NA HEM . . . B 2 5.611 7.941 5.711 1 8.61 ? NA HEM 201 A 1 HETATM 40 N NB HEM . . . B 2 5.083 5.234 5.235 1 8.7 ? NB HEM 201 A 1 HETATM 41 N NC HEM . . . B 2 5.758 4.578 7.99 1 7 ? NC HEM 201 A 1 HETATM 42 N ND HEM . . . B 2 6.278 7.328 8.452 1 10.94 ? ND HEM 201 A 1 HETATM 43 FE FE HEM . . . B 2 5.819 6.274 6.82 1 8.85 ? FE HEM 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #