data_7XEN # _model_server_result.job_id zsMxQ-LM8h7XagPLJD6cNQ _model_server_result.datetime_utc '2024-12-06 08:47:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xen # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7XEN # _exptl.entry_id 7XEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.338 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7XEN _cell.length_a 94.2 _cell.length_b 94.2 _cell.length_c 133.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -44.4 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H19 N2 O7 P S' _chem_comp.formula_weight 378.338 _chem_comp.id 9ZN _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{R})-3-methyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CG2 CB 9ZN sing 1 n n CG1 CB 9ZN sing 2 n n CB SG 9ZN sing 3 n n CB CA 9ZN sing 4 n n OAX PAU 9ZN doub 5 n n OAV PAU 9ZN sing 6 n n CA C 9ZN sing 7 n n CA N 9ZN sing 8 n n OXT C 9ZN doub 9 n n PAU OAW 9ZN sing 10 n n PAU OAT 9ZN sing 11 n n C O 9ZN sing 12 n n CAS OAT 9ZN sing 13 n n CAS CAR 9ZN sing 14 n n N CAO 9ZN doub 15 n n CAO CAL 9ZN sing 16 n n CAR CAL 9ZN sing 17 n y CAR CAM 9ZN doub 18 n y CAL CAK 9ZN doub 19 n y CAM NAN 9ZN sing 20 n y CAK OAP 9ZN sing 21 n n CAK CAJ 9ZN sing 22 n y NAN CAJ 9ZN doub 23 n y CAJ CAQ 9ZN sing 24 n n OAV H1 9ZN sing 25 n n OAW H2 9ZN sing 26 n n CAS H3 9ZN sing 27 n n CAS H4 9ZN sing 28 n n CAM H5 9ZN sing 29 n n CAQ H6 9ZN sing 30 n n CAQ H7 9ZN sing 31 n n CAQ H8 9ZN sing 32 n n OAP H9 9ZN sing 33 n n CAO H10 9ZN sing 34 n n CA H14 9ZN sing 35 n n O H15 9ZN sing 36 n n CG2 H16 9ZN sing 37 n n CG2 H17 9ZN sing 38 n n CG2 H18 9ZN sing 39 n n CG1 H19 9ZN sing 40 n n CG1 H20 9ZN sing 41 n n CG1 H21 9ZN sing 42 n n SG H22 9ZN sing 43 n n # _atom_sites.entry_id 7XEN _atom_sites.fract_transf_matrix[1][1] 0.010616 _atom_sites.fract_transf_matrix[1][2] 0.006129 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9ZN A 1 501 501 9ZN 9ZN . C 3 HOH A 1 601 146 HOH HOH . C 3 HOH A 2 602 161 HOH HOH . C 3 HOH A 3 603 51 HOH HOH . C 3 HOH A 4 604 130 HOH HOH . C 3 HOH A 5 605 72 HOH HOH . C 3 HOH A 6 606 45 HOH HOH . C 3 HOH A 7 607 87 HOH HOH . C 3 HOH A 8 608 201 HOH HOH . C 3 HOH A 9 609 191 HOH HOH . C 3 HOH A 10 610 100 HOH HOH . C 3 HOH A 11 611 53 HOH HOH . C 3 HOH A 12 612 93 HOH HOH . C 3 HOH A 13 613 137 HOH HOH . C 3 HOH A 14 614 190 HOH HOH . C 3 HOH A 15 615 79 HOH HOH . C 3 HOH A 16 616 34 HOH HOH . C 3 HOH A 17 617 200 HOH HOH . C 3 HOH A 18 618 74 HOH HOH . C 3 HOH A 19 619 55 HOH HOH . C 3 HOH A 20 620 10 HOH HOH . C 3 HOH A 21 621 19 HOH HOH . C 3 HOH A 22 622 15 HOH HOH . C 3 HOH A 23 623 121 HOH HOH . C 3 HOH A 24 624 194 HOH HOH . C 3 HOH A 25 625 14 HOH HOH . C 3 HOH A 26 626 98 HOH HOH . C 3 HOH A 27 627 49 HOH HOH . C 3 HOH A 28 628 4 HOH HOH . C 3 HOH A 29 629 59 HOH HOH . C 3 HOH A 30 630 125 HOH HOH . C 3 HOH A 31 631 83 HOH HOH . C 3 HOH A 32 632 42 HOH HOH . C 3 HOH A 33 633 56 HOH HOH . C 3 HOH A 34 634 64 HOH HOH . C 3 HOH A 35 635 180 HOH HOH . C 3 HOH A 36 636 103 HOH HOH . C 3 HOH A 37 637 18 HOH HOH . C 3 HOH A 38 638 66 HOH HOH . C 3 HOH A 39 639 13 HOH HOH . C 3 HOH A 40 640 97 HOH HOH . C 3 HOH A 41 641 33 HOH HOH . C 3 HOH A 42 642 149 HOH HOH . C 3 HOH A 43 643 36 HOH HOH . C 3 HOH A 44 644 52 HOH HOH . C 3 HOH A 45 645 31 HOH HOH . C 3 HOH A 46 646 165 HOH HOH . C 3 HOH A 47 647 95 HOH HOH . C 3 HOH A 48 648 199 HOH HOH . C 3 HOH A 49 649 68 HOH HOH . C 3 HOH A 50 650 44 HOH HOH . C 3 HOH A 51 651 46 HOH HOH . C 3 HOH A 52 652 16 HOH HOH . C 3 HOH A 53 653 43 HOH HOH . C 3 HOH A 54 654 179 HOH HOH . C 3 HOH A 55 655 186 HOH HOH . C 3 HOH A 56 656 62 HOH HOH . C 3 HOH A 57 657 29 HOH HOH . C 3 HOH A 58 658 85 HOH HOH . C 3 HOH A 59 659 3 HOH HOH . C 3 HOH A 60 660 23 HOH HOH . C 3 HOH A 61 661 67 HOH HOH . C 3 HOH A 62 662 132 HOH HOH . C 3 HOH A 63 663 102 HOH HOH . C 3 HOH A 64 664 27 HOH HOH . C 3 HOH A 65 665 105 HOH HOH . C 3 HOH A 66 666 77 HOH HOH . C 3 HOH A 67 667 75 HOH HOH . C 3 HOH A 68 668 84 HOH HOH . C 3 HOH A 69 669 229 HOH HOH . C 3 HOH A 70 670 12 HOH HOH . C 3 HOH A 71 671 141 HOH HOH . C 3 HOH A 72 672 17 HOH HOH . C 3 HOH A 73 673 111 HOH HOH . C 3 HOH A 74 674 48 HOH HOH . C 3 HOH A 75 675 187 HOH HOH . C 3 HOH A 76 676 39 HOH HOH . C 3 HOH A 77 677 65 HOH HOH . C 3 HOH A 78 678 50 HOH HOH . C 3 HOH A 79 679 134 HOH HOH . C 3 HOH A 80 680 41 HOH HOH . C 3 HOH A 81 681 88 HOH HOH . C 3 HOH A 82 682 197 HOH HOH . C 3 HOH A 83 683 176 HOH HOH . C 3 HOH A 84 684 177 HOH HOH . C 3 HOH A 85 685 181 HOH HOH . C 3 HOH A 86 686 118 HOH HOH . C 3 HOH A 87 687 164 HOH HOH . C 3 HOH A 88 688 96 HOH HOH . C 3 HOH A 89 689 80 HOH HOH . C 3 HOH A 90 690 20 HOH HOH . C 3 HOH A 91 691 112 HOH HOH . C 3 HOH A 92 692 144 HOH HOH . C 3 HOH A 93 693 60 HOH HOH . C 3 HOH A 94 694 158 HOH HOH . C 3 HOH A 95 695 124 HOH HOH . C 3 HOH A 96 696 236 HOH HOH . C 3 HOH A 97 697 26 HOH HOH . C 3 HOH A 98 698 127 HOH HOH . C 3 HOH A 99 699 182 HOH HOH . C 3 HOH A 100 700 61 HOH HOH . C 3 HOH A 101 701 113 HOH HOH . C 3 HOH A 102 702 185 HOH HOH . C 3 HOH A 103 703 131 HOH HOH . C 3 HOH A 104 704 160 HOH HOH . C 3 HOH A 105 705 54 HOH HOH . C 3 HOH A 106 706 106 HOH HOH . C 3 HOH A 107 707 151 HOH HOH . C 3 HOH A 108 708 120 HOH HOH . C 3 HOH A 109 709 82 HOH HOH . C 3 HOH A 110 710 204 HOH HOH . C 3 HOH A 111 711 28 HOH HOH . C 3 HOH A 112 712 162 HOH HOH . C 3 HOH A 113 713 69 HOH HOH . C 3 HOH A 114 714 104 HOH HOH . C 3 HOH A 115 715 5 HOH HOH . C 3 HOH A 116 716 157 HOH HOH . C 3 HOH A 117 717 76 HOH HOH . C 3 HOH A 118 718 123 HOH HOH . C 3 HOH A 119 719 21 HOH HOH . C 3 HOH A 120 720 189 HOH HOH . C 3 HOH A 121 721 78 HOH HOH . C 3 HOH A 122 722 133 HOH HOH . C 3 HOH A 123 723 81 HOH HOH . C 3 HOH A 124 724 232 HOH HOH . C 3 HOH A 125 725 159 HOH HOH . C 3 HOH A 126 726 107 HOH HOH . C 3 HOH A 127 727 188 HOH HOH . C 3 HOH A 128 728 47 HOH HOH . C 3 HOH A 129 729 184 HOH HOH . C 3 HOH A 130 730 63 HOH HOH . C 3 HOH A 131 731 71 HOH HOH . C 3 HOH A 132 732 211 HOH HOH . C 3 HOH A 133 733 198 HOH HOH . C 3 HOH A 134 734 70 HOH HOH . C 3 HOH A 135 735 233 HOH HOH . C 3 HOH A 136 736 196 HOH HOH . C 3 HOH A 137 737 32 HOH HOH . C 3 HOH A 138 738 35 HOH HOH . C 3 HOH A 139 739 205 HOH HOH . C 3 HOH A 140 740 38 HOH HOH . C 3 HOH A 141 741 139 HOH HOH . C 3 HOH A 142 742 99 HOH HOH . C 3 HOH A 143 743 156 HOH HOH . C 3 HOH A 144 744 235 HOH HOH . C 3 HOH A 145 745 119 HOH HOH . C 3 HOH A 146 746 142 HOH HOH . C 3 HOH A 147 747 58 HOH HOH . C 3 HOH A 148 748 147 HOH HOH . C 3 HOH A 149 749 90 HOH HOH . C 3 HOH A 150 750 154 HOH HOH . C 3 HOH A 151 751 91 HOH HOH . C 3 HOH A 152 752 140 HOH HOH . C 3 HOH A 153 753 212 HOH HOH . C 3 HOH A 154 754 145 HOH HOH . C 3 HOH A 155 755 110 HOH HOH . C 3 HOH A 156 756 222 HOH HOH . C 3 HOH A 157 757 109 HOH HOH . C 3 HOH A 158 758 135 HOH HOH . C 3 HOH A 159 759 22 HOH HOH . C 3 HOH A 160 760 217 HOH HOH . C 3 HOH A 161 761 202 HOH HOH . C 3 HOH A 162 762 221 HOH HOH . C 3 HOH A 163 763 168 HOH HOH . C 3 HOH A 164 764 117 HOH HOH . C 3 HOH A 165 765 40 HOH HOH . C 3 HOH A 166 766 89 HOH HOH . C 3 HOH A 167 767 166 HOH HOH . C 3 HOH A 168 768 101 HOH HOH . C 3 HOH A 169 769 116 HOH HOH . C 3 HOH A 170 770 223 HOH HOH . C 3 HOH A 171 771 128 HOH HOH . C 3 HOH A 172 772 183 HOH HOH . C 3 HOH A 173 773 206 HOH HOH . C 3 HOH A 174 774 155 HOH HOH . C 3 HOH A 175 775 167 HOH HOH . C 3 HOH A 176 776 148 HOH HOH . C 3 HOH A 177 777 94 HOH HOH . C 3 HOH A 178 778 7 HOH HOH . C 3 HOH A 179 779 114 HOH HOH . C 3 HOH A 180 780 1 HOH HOH . C 3 HOH A 181 781 11 HOH HOH . C 3 HOH A 182 782 9 HOH HOH . C 3 HOH A 183 783 6 HOH HOH . C 3 HOH A 184 784 2 HOH HOH . C 3 HOH A 185 785 24 HOH HOH . C 3 HOH A 186 786 115 HOH HOH . C 3 HOH A 187 787 136 HOH HOH . C 3 HOH A 188 788 152 HOH HOH . C 3 HOH A 189 789 227 HOH HOH . C 3 HOH A 190 790 30 HOH HOH . C 3 HOH A 191 791 86 HOH HOH . C 3 HOH A 192 792 143 HOH HOH . C 3 HOH A 193 793 209 HOH HOH . C 3 HOH A 194 794 73 HOH HOH . C 3 HOH A 195 795 218 HOH HOH . C 3 HOH A 196 796 193 HOH HOH . C 3 HOH A 197 797 37 HOH HOH . C 3 HOH A 198 798 170 HOH HOH . C 3 HOH A 199 799 138 HOH HOH . C 3 HOH A 200 800 208 HOH HOH . C 3 HOH A 201 801 169 HOH HOH . C 3 HOH A 202 802 226 HOH HOH . C 3 HOH A 203 803 192 HOH HOH . C 3 HOH A 204 804 153 HOH HOH . C 3 HOH A 205 805 150 HOH HOH . C 3 HOH A 206 806 175 HOH HOH . C 3 HOH A 207 807 224 HOH HOH . C 3 HOH A 208 808 215 HOH HOH . C 3 HOH A 209 809 231 HOH HOH . C 3 HOH A 210 810 129 HOH HOH . C 3 HOH A 211 811 225 HOH HOH . C 3 HOH A 212 812 108 HOH HOH . C 3 HOH A 213 813 220 HOH HOH . C 3 HOH A 214 814 171 HOH HOH . C 3 HOH A 215 815 210 HOH HOH . C 3 HOH A 216 816 230 HOH HOH . C 3 HOH A 217 817 234 HOH HOH . C 3 HOH A 218 818 207 HOH HOH . C 3 HOH A 219 819 228 HOH HOH . C 3 HOH A 220 820 163 HOH HOH . C 3 HOH A 221 821 178 HOH HOH . C 3 HOH A 222 822 57 HOH HOH . C 3 HOH A 223 823 172 HOH HOH . C 3 HOH A 224 824 214 HOH HOH . C 3 HOH A 225 825 92 HOH HOH . C 3 HOH A 226 826 8 HOH HOH . C 3 HOH A 227 827 213 HOH HOH . C 3 HOH A 228 828 219 HOH HOH . C 3 HOH A 229 829 195 HOH HOH . C 3 HOH A 230 830 173 HOH HOH . C 3 HOH A 231 831 126 HOH HOH . C 3 HOH A 232 832 25 HOH HOH . C 3 HOH A 233 833 216 HOH HOH . C 3 HOH A 234 834 174 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAV 9ZN . . . B 2 47.462 -8.085 -17.751 1 54.7 ? OAV 9ZN 501 A 1 HETATM 2 P PAU 9ZN . . . B 2 46.176 -8.506 -16.965 1 66.31 ? PAU 9ZN 501 A 1 HETATM 3 O OAX 9ZN . . . B 2 45.371 -9.163 -18.169 1 63.56 ? OAX 9ZN 501 A 1 HETATM 4 O OAW 9ZN . . . B 2 45.424 -7.425 -16.242 1 64.04 ? OAW 9ZN 501 A 1 HETATM 5 O OAT 9ZN . . . B 2 46.474 -9.804 -16.041 1 71.58 ? OAT 9ZN 501 A 1 HETATM 6 C CAS 9ZN . . . B 2 47.254 -10.804 -16.66 1 64.29 ? CAS 9ZN 501 A 1 HETATM 7 C CAR 9ZN . . . B 2 47.403 -11.726 -15.627 1 74.73 ? CAR 9ZN 501 A 1 HETATM 8 C CAM 9ZN . . . B 2 48.468 -11.484 -14.777 1 73.8 ? CAM 9ZN 501 A 1 HETATM 9 N NAN 9ZN . . . B 2 48.745 -12.274 -13.709 1 65.45 ? NAN 9ZN 501 A 1 HETATM 10 C CAJ 9ZN . . . B 2 47.979 -13.359 -13.447 1 86.69 ? CAJ 9ZN 501 A 1 HETATM 11 C CAQ 9ZN . . . B 2 48.278 -14.207 -12.333 1 70.12 ? CAQ 9ZN 501 A 1 HETATM 12 C CAK 9ZN . . . B 2 46.906 -13.659 -14.293 1 77.67 ? CAK 9ZN 501 A 1 HETATM 13 O OAP 9ZN . . . B 2 46.183 -14.766 -13.95 1 64.39 ? OAP 9ZN 501 A 1 HETATM 14 C CAL 9ZN . . . B 2 46.548 -12.831 -15.376 1 76.21 ? CAL 9ZN 501 A 1 HETATM 15 C CAO 9ZN . . . B 2 45.491 -13.09 -16.262 1 75.91 ? CAO 9ZN 501 A 1 HETATM 16 N N 9ZN . . . B 2 45.196 -14.362 -16.328 1 74.58 ? N 9ZN 501 A 1 HETATM 17 C CA 9ZN . . . B 2 44.306 -14.942 -17.289 1 79.49 ? CA 9ZN 501 A 1 HETATM 18 C C 9ZN . . . B 2 43.697 -16.189 -16.666 1 78.34 ? C 9ZN 501 A 1 HETATM 19 O OXT 9ZN . . . B 2 42.527 -16.414 -17.016 1 78.99 ? OXT 9ZN 501 A 1 HETATM 20 O O 9ZN . . . B 2 44.353 -16.894 -15.849 1 76.64 ? O 9ZN 501 A 1 HETATM 21 C CB 9ZN . . . B 2 45.24 -15.241 -18.489 1 87.99 ? CB 9ZN 501 A 1 HETATM 22 C CG2 9ZN . . . B 2 44.632 -14.537 -19.714 1 91.14 ? CG2 9ZN 501 A 1 HETATM 23 C CG1 9ZN . . . B 2 45.567 -16.747 -18.679 1 72.03 ? CG1 9ZN 501 A 1 HETATM 24 S SG 9ZN . . . B 2 46.831 -14.55 -18.222 1 117.92 ? SG 9ZN 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #