data_7XF7 # _model_server_result.job_id qqEk4xuIumki3awKgdgJBg _model_server_result.datetime_utc '2024-11-22 22:08:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xf7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7XF7 # _exptl.entry_id 7XF7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7XF7 _cell.length_a 32.796 _cell.length_b 55.758 _cell.length_c 60.859 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XF7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 24 1_555 A SG CYS 128 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 30 A CYS 48 1_555 A SG CYS 116 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 65 A CYS 83 1_555 A SG CYS 81 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 77 A CYS 95 1_555 A SG CYS 95 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NDG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NDG sing 237 n n C1 O5 NDG sing 238 n n C1 O1 NDG sing 239 n n C1 H1 NDG sing 240 n n C2 C3 NDG sing 241 n n C2 N2 NDG sing 242 n n C2 H2 NDG sing 243 n n C3 C4 NDG sing 244 n n C3 O3 NDG sing 245 n n C3 H3 NDG sing 246 n n C4 C5 NDG sing 247 n n C4 O4 NDG sing 248 n n C4 H4 NDG sing 249 n n C5 C6 NDG sing 250 n n C5 O5 NDG sing 251 n n C5 H5 NDG sing 252 n n C6 O6 NDG sing 253 n n C6 H61 NDG sing 254 n n C6 H62 NDG sing 255 n n C7 C8 NDG sing 256 n n C7 O7 NDG doub 257 n n C7 N2 NDG sing 258 n n C8 H81 NDG sing 259 n n C8 H82 NDG sing 260 n n C8 H83 NDG sing 261 n n O3 HO3 NDG sing 262 n n O4 HO4 NDG sing 263 n n O6 HO6 NDG sing 264 n n N2 HN2 NDG sing 265 n n O1 HO1 NDG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7XF7 _atom_sites.fract_transf_matrix[1][1] 0.030492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017935 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDG A 1 201 201 NDG NDG . C 3 HOH A 1 301 114 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 4 HOH HOH . C 3 HOH A 4 304 69 HOH HOH . C 3 HOH A 5 305 93 HOH HOH . C 3 HOH A 6 306 125 HOH HOH . C 3 HOH A 7 307 95 HOH HOH . C 3 HOH A 8 308 11 HOH HOH . C 3 HOH A 9 309 165 HOH HOH . C 3 HOH A 10 310 86 HOH HOH . C 3 HOH A 11 311 200 HOH HOH . C 3 HOH A 12 312 50 HOH HOH . C 3 HOH A 13 313 195 HOH HOH . C 3 HOH A 14 314 61 HOH HOH . C 3 HOH A 15 315 75 HOH HOH . C 3 HOH A 16 316 76 HOH HOH . C 3 HOH A 17 317 87 HOH HOH . C 3 HOH A 18 318 55 HOH HOH . C 3 HOH A 19 319 107 HOH HOH . C 3 HOH A 20 320 68 HOH HOH . C 3 HOH A 21 321 53 HOH HOH . C 3 HOH A 22 322 26 HOH HOH . C 3 HOH A 23 323 101 HOH HOH . C 3 HOH A 24 324 19 HOH HOH . C 3 HOH A 25 325 96 HOH HOH . C 3 HOH A 26 326 49 HOH HOH . C 3 HOH A 27 327 170 HOH HOH . C 3 HOH A 28 328 40 HOH HOH . C 3 HOH A 29 329 52 HOH HOH . C 3 HOH A 30 330 118 HOH HOH . C 3 HOH A 31 331 16 HOH HOH . C 3 HOH A 32 332 33 HOH HOH . C 3 HOH A 33 333 192 HOH HOH . C 3 HOH A 34 334 12 HOH HOH . C 3 HOH A 35 335 58 HOH HOH . C 3 HOH A 36 336 64 HOH HOH . C 3 HOH A 37 337 41 HOH HOH . C 3 HOH A 38 338 94 HOH HOH . C 3 HOH A 39 339 120 HOH HOH . C 3 HOH A 40 340 35 HOH HOH . C 3 HOH A 41 341 85 HOH HOH . C 3 HOH A 42 342 154 HOH HOH . C 3 HOH A 43 343 119 HOH HOH . C 3 HOH A 44 344 188 HOH HOH . C 3 HOH A 45 345 10 HOH HOH . C 3 HOH A 46 346 17 HOH HOH . C 3 HOH A 47 347 140 HOH HOH . C 3 HOH A 48 348 22 HOH HOH . C 3 HOH A 49 349 39 HOH HOH . C 3 HOH A 50 350 15 HOH HOH . C 3 HOH A 51 351 32 HOH HOH . C 3 HOH A 52 352 194 HOH HOH . C 3 HOH A 53 353 62 HOH HOH . C 3 HOH A 54 354 130 HOH HOH . C 3 HOH A 55 355 145 HOH HOH . C 3 HOH A 56 356 7 HOH HOH . C 3 HOH A 57 357 77 HOH HOH . C 3 HOH A 58 358 43 HOH HOH . C 3 HOH A 59 359 138 HOH HOH . C 3 HOH A 60 360 80 HOH HOH . C 3 HOH A 61 361 112 HOH HOH . C 3 HOH A 62 362 117 HOH HOH . C 3 HOH A 63 363 31 HOH HOH . C 3 HOH A 64 364 56 HOH HOH . C 3 HOH A 65 365 103 HOH HOH . C 3 HOH A 66 366 156 HOH HOH . C 3 HOH A 67 367 36 HOH HOH . C 3 HOH A 68 368 21 HOH HOH . C 3 HOH A 69 369 66 HOH HOH . C 3 HOH A 70 370 105 HOH HOH . C 3 HOH A 71 371 91 HOH HOH . C 3 HOH A 72 372 183 HOH HOH . C 3 HOH A 73 373 115 HOH HOH . C 3 HOH A 74 374 37 HOH HOH . C 3 HOH A 75 375 63 HOH HOH . C 3 HOH A 76 376 157 HOH HOH . C 3 HOH A 77 377 121 HOH HOH . C 3 HOH A 78 378 51 HOH HOH . C 3 HOH A 79 379 72 HOH HOH . C 3 HOH A 80 380 1 HOH HOH . C 3 HOH A 81 381 89 HOH HOH . C 3 HOH A 82 382 78 HOH HOH . C 3 HOH A 83 383 126 HOH HOH . C 3 HOH A 84 384 13 HOH HOH . C 3 HOH A 85 385 9 HOH HOH . C 3 HOH A 86 386 184 HOH HOH . C 3 HOH A 87 387 8 HOH HOH . C 3 HOH A 88 388 27 HOH HOH . C 3 HOH A 89 389 155 HOH HOH . C 3 HOH A 90 390 28 HOH HOH . C 3 HOH A 91 391 150 HOH HOH . C 3 HOH A 92 392 144 HOH HOH . C 3 HOH A 93 393 14 HOH HOH . C 3 HOH A 94 394 59 HOH HOH . C 3 HOH A 95 395 142 HOH HOH . C 3 HOH A 96 396 113 HOH HOH . C 3 HOH A 97 397 171 HOH HOH . C 3 HOH A 98 398 141 HOH HOH . C 3 HOH A 99 399 42 HOH HOH . C 3 HOH A 100 400 135 HOH HOH . C 3 HOH A 101 401 137 HOH HOH . C 3 HOH A 102 402 25 HOH HOH . C 3 HOH A 103 403 23 HOH HOH . C 3 HOH A 104 404 173 HOH HOH . C 3 HOH A 105 405 20 HOH HOH . C 3 HOH A 106 406 129 HOH HOH . C 3 HOH A 107 407 44 HOH HOH . C 3 HOH A 108 408 65 HOH HOH . C 3 HOH A 109 409 109 HOH HOH . C 3 HOH A 110 410 127 HOH HOH . C 3 HOH A 111 411 70 HOH HOH . C 3 HOH A 112 412 164 HOH HOH . C 3 HOH A 113 413 176 HOH HOH . C 3 HOH A 114 414 99 HOH HOH . C 3 HOH A 115 415 54 HOH HOH . C 3 HOH A 116 416 71 HOH HOH . C 3 HOH A 117 417 67 HOH HOH . C 3 HOH A 118 418 82 HOH HOH . C 3 HOH A 119 419 110 HOH HOH . C 3 HOH A 120 420 46 HOH HOH . C 3 HOH A 121 421 6 HOH HOH . C 3 HOH A 122 422 106 HOH HOH . C 3 HOH A 123 423 163 HOH HOH . C 3 HOH A 124 424 45 HOH HOH . C 3 HOH A 125 425 73 HOH HOH . C 3 HOH A 126 426 30 HOH HOH . C 3 HOH A 127 427 190 HOH HOH . C 3 HOH A 128 428 177 HOH HOH . C 3 HOH A 129 429 84 HOH HOH . C 3 HOH A 130 430 167 HOH HOH . C 3 HOH A 131 431 111 HOH HOH . C 3 HOH A 132 432 196 HOH HOH . C 3 HOH A 133 433 57 HOH HOH . C 3 HOH A 134 434 175 HOH HOH . C 3 HOH A 135 435 174 HOH HOH . C 3 HOH A 136 436 5 HOH HOH . C 3 HOH A 137 437 24 HOH HOH . C 3 HOH A 138 438 185 HOH HOH . C 3 HOH A 139 439 169 HOH HOH . C 3 HOH A 140 440 122 HOH HOH . C 3 HOH A 141 441 3 HOH HOH . C 3 HOH A 142 442 152 HOH HOH . C 3 HOH A 143 443 97 HOH HOH . C 3 HOH A 144 444 186 HOH HOH . C 3 HOH A 145 445 162 HOH HOH . C 3 HOH A 146 446 108 HOH HOH . C 3 HOH A 147 447 143 HOH HOH . C 3 HOH A 148 448 98 HOH HOH . C 3 HOH A 149 449 60 HOH HOH . C 3 HOH A 150 450 172 HOH HOH . C 3 HOH A 151 451 148 HOH HOH . C 3 HOH A 152 452 104 HOH HOH . C 3 HOH A 153 453 123 HOH HOH . C 3 HOH A 154 454 83 HOH HOH . C 3 HOH A 155 455 197 HOH HOH . C 3 HOH A 156 456 187 HOH HOH . C 3 HOH A 157 457 47 HOH HOH . C 3 HOH A 158 458 34 HOH HOH . C 3 HOH A 159 459 159 HOH HOH . C 3 HOH A 160 460 136 HOH HOH . C 3 HOH A 161 461 48 HOH HOH . C 3 HOH A 162 462 147 HOH HOH . C 3 HOH A 163 463 182 HOH HOH . C 3 HOH A 164 464 81 HOH HOH . C 3 HOH A 165 465 139 HOH HOH . C 3 HOH A 166 466 92 HOH HOH . C 3 HOH A 167 467 132 HOH HOH . C 3 HOH A 168 468 161 HOH HOH . C 3 HOH A 169 469 79 HOH HOH . C 3 HOH A 170 470 151 HOH HOH . C 3 HOH A 171 471 131 HOH HOH . C 3 HOH A 172 472 29 HOH HOH . C 3 HOH A 173 473 88 HOH HOH . C 3 HOH A 174 474 153 HOH HOH . C 3 HOH A 175 475 179 HOH HOH . C 3 HOH A 176 476 116 HOH HOH . C 3 HOH A 177 477 189 HOH HOH . C 3 HOH A 178 478 124 HOH HOH . C 3 HOH A 179 479 149 HOH HOH . C 3 HOH A 180 480 38 HOH HOH . C 3 HOH A 181 481 193 HOH HOH . C 3 HOH A 182 482 100 HOH HOH . C 3 HOH A 183 483 90 HOH HOH . C 3 HOH A 184 484 146 HOH HOH . C 3 HOH A 185 485 133 HOH HOH . C 3 HOH A 186 486 128 HOH HOH . C 3 HOH A 187 487 166 HOH HOH . C 3 HOH A 188 488 160 HOH HOH . C 3 HOH A 189 489 134 HOH HOH . C 3 HOH A 190 490 18 HOH HOH . C 3 HOH A 191 491 102 HOH HOH . C 3 HOH A 192 492 168 HOH HOH . C 3 HOH A 193 493 191 HOH HOH . C 3 HOH A 194 494 180 HOH HOH . C 3 HOH A 195 495 198 HOH HOH . C 3 HOH A 196 496 74 HOH HOH . C 3 HOH A 197 497 158 HOH HOH . C 3 HOH A 198 498 199 HOH HOH . C 3 HOH A 199 499 178 HOH HOH . C 3 HOH A 200 500 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDG . . . B 2 -2.852 -13.667 24.68 1 27.44 ? C1 NDG 201 A 1 HETATM 2 C C2 NDG . . . B 2 -1.356 -13.736 24.401 1 22.13 ? C2 NDG 201 A 1 HETATM 3 C C3 NDG . . . B 2 -0.691 -14.585 25.61 1 27.81 ? C3 NDG 201 A 1 HETATM 4 C C4 NDG . . . B 2 -1.104 -13.833 26.995 1 28.09 ? C4 NDG 201 A 1 HETATM 5 C C5 NDG . . . B 2 -2.707 -13.78 27.065 1 30.49 ? C5 NDG 201 A 1 HETATM 6 C C6 NDG . . . B 2 -3.106 -12.924 28.307 1 31.6 ? C6 NDG 201 A 1 HETATM 7 C C7 NDG . . . B 2 -0.679 -13.956 22.039 1 19.44 ? C7 NDG 201 A 1 HETATM 8 C C8 NDG . . . B 2 -0.411 -14.912 20.863 1 17.89 ? C8 NDG 201 A 1 HETATM 9 O O5 NDG . . . B 2 -3.076 -12.979 25.91 1 27.24 ? O5 NDG 201 A 1 HETATM 10 O O3 NDG . . . B 2 0.756 -14.772 25.469 1 31.55 ? O3 NDG 201 A 1 HETATM 11 O O4 NDG . . . B 2 -0.45 -14.471 28.132 1 35.64 ? O4 NDG 201 A 1 HETATM 12 O O6 NDG . . . B 2 -3.802 -11.726 27.983 1 34.44 ? O6 NDG 201 A 1 HETATM 13 O O7 NDG . . . B 2 -0.549 -12.745 21.96 1 17.24 ? O7 NDG 201 A 1 HETATM 14 N N2 NDG . . . B 2 -1.083 -14.541 23.199 1 22.57 ? N2 NDG 201 A 1 HETATM 15 O O1 NDG . . . B 2 -3.402 -14.965 24.705 1 23.59 ? O1 NDG 201 A 1 HETATM 16 H H2 NDG . . . B 2 -0.966 -12.71 24.346 1 26.59 ? H2 NDG 201 A 1 HETATM 17 H H3 NDG . . . B 2 -1.101 -15.606 25.58 1 33.41 ? H3 NDG 201 A 1 HETATM 18 H H4 NDG . . . B 2 -0.702 -12.806 26.962 1 33.74 ? H4 NDG 201 A 1 HETATM 19 H H61 NDG . . . B 2 -2.217 -12.633 28.872 1 37.95 ? H61 NDG 201 A 1 HETATM 20 H H62 NDG . . . B 2 -3.752 -13.498 28.975 1 37.95 ? H62 NDG 201 A 1 HETATM 21 H H81 NDG . . . B 2 -1.307 -15.477 20.584 1 21.5 ? H81 NDG 201 A 1 HETATM 22 H H82 NDG . . . B 2 0.367 -15.645 21.103 1 21.5 ? H82 NDG 201 A 1 HETATM 23 H H83 NDG . . . B 2 -0.079 -14.376 19.968 1 21.5 ? H83 NDG 201 A 1 HETATM 24 H HO3 NDG . . . B 2 0.956 -15.259 26.301 1 37.89 ? HO3 NDG 201 A 1 HETATM 25 H HO4 NDG . . . B 2 0.024 -13.608 28.408 1 42.8 ? HO4 NDG 201 A 1 HETATM 26 H HO6 NDG . . . B 2 -4.655 -11.982 27.597 1 41.36 ? HO6 NDG 201 A 1 HETATM 27 H HN2 NDG . . . B 2 -1.495 -15.462 23.178 1 27.11 ? HN2 NDG 201 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #