data_7XGI
#
_model_server_result.job_id            eb-pkUMVZRxFkwSR-aoS5A 
_model_server_result.datetime_utc      '2024-11-01 20:43:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xgi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    7XGI 
#
_exptl.entry_id    7XGI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7XGI 
_cell.length_a            50.756 
_cell.length_b            50.756 
_cell.length_c            168.241 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XGI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 143 A ASP 141 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 A OD2 ASP 171 A ASP 169 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc3 A OD1 ASN 172 A ASN 170 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc4 C O23 DNI . A DNI 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc5 C O24 DNI . A DNI 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc6 D MG MG . A MG 303 1_555 E O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 316 n n 
N HN1 SAH sing 317 n n 
N HN2 SAH sing 318 n n 
CA CB SAH sing 319 n n 
CA C SAH sing 320 n n 
CA HA SAH sing 321 n n 
CB CG SAH sing 322 n n 
CB HB1 SAH sing 323 n n 
CB HB2 SAH sing 324 n n 
CG SD SAH sing 325 n n 
CG HG1 SAH sing 326 n n 
CG HG2 SAH sing 327 n n 
SD C5' SAH sing 328 n n 
C O SAH doub 329 n n 
C OXT SAH sing 330 n n 
OXT HXT SAH sing 331 n n 
C5' C4' SAH sing 332 n n 
C5' "H5'1" SAH sing 333 n n 
C5' "H5'2" SAH sing 334 n n 
C4' O4' SAH sing 335 n n 
C4' C3' SAH sing 336 n n 
C4' H4' SAH sing 337 n n 
O4' C1' SAH sing 338 n n 
C3' O3' SAH sing 339 n n 
C3' C2' SAH sing 340 n n 
C3' H3' SAH sing 341 n n 
O3' HO3' SAH sing 342 n n 
C2' O2' SAH sing 343 n n 
C2' C1' SAH sing 344 n n 
C2' H2' SAH sing 345 n n 
O2' HO2' SAH sing 346 n n 
C1' N9 SAH sing 347 n n 
C1' H1' SAH sing 348 n n 
N9 C8 SAH sing 349 n y 
N9 C4 SAH sing 350 n y 
C8 N7 SAH doub 351 n y 
C8 H8 SAH sing 352 n n 
N7 C5 SAH sing 353 n y 
C5 C6 SAH sing 354 n y 
C5 C4 SAH doub 355 n y 
C6 N6 SAH sing 356 n n 
C6 N1 SAH doub 357 n y 
N6 HN61 SAH sing 358 n n 
N6 HN62 SAH sing 359 n n 
N1 C2 SAH sing 360 n y 
C2 N3 SAH doub 361 n y 
C2 H2 SAH sing 362 n n 
N3 C4 SAH sing 363 n y 
#
_atom_sites.entry_id                     7XGI 
_atom_sites.fract_transf_matrix[1][1]    0.019702 
_atom_sites.fract_transf_matrix[1][2]    0.011375 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02275 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005944 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 301 1 SAH SAH . 
C 3 DNI A 1 302 1 DNI OCP . 
D 4 MG A 1 303 1 MG MG . 
E 5 HOH A 1 401 87 HOH HOH . 
E 5 HOH A 2 402 68 HOH HOH . 
E 5 HOH A 3 403 45 HOH HOH . 
E 5 HOH A 4 404 19 HOH HOH . 
E 5 HOH A 5 405 32 HOH HOH . 
E 5 HOH A 6 406 23 HOH HOH . 
E 5 HOH A 7 407 83 HOH HOH . 
E 5 HOH A 8 408 11 HOH HOH . 
E 5 HOH A 9 409 22 HOH HOH . 
E 5 HOH A 10 410 91 HOH HOH . 
E 5 HOH A 11 411 41 HOH HOH . 
E 5 HOH A 12 412 6 HOH HOH . 
E 5 HOH A 13 413 71 HOH HOH . 
E 5 HOH A 14 414 5 HOH HOH . 
E 5 HOH A 15 415 42 HOH HOH . 
E 5 HOH A 16 416 39 HOH HOH . 
E 5 HOH A 17 417 9 HOH HOH . 
E 5 HOH A 18 418 14 HOH HOH . 
E 5 HOH A 19 419 64 HOH HOH . 
E 5 HOH A 20 420 88 HOH HOH . 
E 5 HOH A 21 421 13 HOH HOH . 
E 5 HOH A 22 422 21 HOH HOH . 
E 5 HOH A 23 423 49 HOH HOH . 
E 5 HOH A 24 424 18 HOH HOH . 
E 5 HOH A 25 425 25 HOH HOH . 
E 5 HOH A 26 426 8 HOH HOH . 
E 5 HOH A 27 427 89 HOH HOH . 
E 5 HOH A 28 428 48 HOH HOH . 
E 5 HOH A 29 429 16 HOH HOH . 
E 5 HOH A 30 430 61 HOH HOH . 
E 5 HOH A 31 431 36 HOH HOH . 
E 5 HOH A 32 432 63 HOH HOH . 
E 5 HOH A 33 433 34 HOH HOH . 
E 5 HOH A 34 434 15 HOH HOH . 
E 5 HOH A 35 435 75 HOH HOH . 
E 5 HOH A 36 436 12 HOH HOH . 
E 5 HOH A 37 437 60 HOH HOH . 
E 5 HOH A 38 438 55 HOH HOH . 
E 5 HOH A 39 439 35 HOH HOH . 
E 5 HOH A 40 440 79 HOH HOH . 
E 5 HOH A 41 441 20 HOH HOH . 
E 5 HOH A 42 442 54 HOH HOH . 
E 5 HOH A 43 443 84 HOH HOH . 
E 5 HOH A 44 444 24 HOH HOH . 
E 5 HOH A 45 445 73 HOH HOH . 
E 5 HOH A 46 446 17 HOH HOH . 
E 5 HOH A 47 447 85 HOH HOH . 
E 5 HOH A 48 448 43 HOH HOH . 
E 5 HOH A 49 449 52 HOH HOH . 
E 5 HOH A 50 450 59 HOH HOH . 
E 5 HOH A 51 451 44 HOH HOH . 
E 5 HOH A 52 452 30 HOH HOH . 
E 5 HOH A 53 453 2 HOH HOH . 
E 5 HOH A 54 454 37 HOH HOH . 
E 5 HOH A 55 455 28 HOH HOH . 
E 5 HOH A 56 456 7 HOH HOH . 
E 5 HOH A 57 457 50 HOH HOH . 
E 5 HOH A 58 458 31 HOH HOH . 
E 5 HOH A 59 459 46 HOH HOH . 
E 5 HOH A 60 460 78 HOH HOH . 
E 5 HOH A 61 461 57 HOH HOH . 
E 5 HOH A 62 462 56 HOH HOH . 
E 5 HOH A 63 463 76 HOH HOH . 
E 5 HOH A 64 464 58 HOH HOH . 
E 5 HOH A 65 465 77 HOH HOH . 
E 5 HOH A 66 466 26 HOH HOH . 
E 5 HOH A 67 467 38 HOH HOH . 
E 5 HOH A 68 468 90 HOH HOH . 
E 5 HOH A 69 469 27 HOH HOH . 
E 5 HOH A 70 470 53 HOH HOH . 
E 5 HOH A 71 471 47 HOH HOH . 
E 5 HOH A 72 472 51 HOH HOH . 
E 5 HOH A 73 473 62 HOH HOH . 
E 5 HOH A 74 474 72 HOH HOH . 
E 5 HOH A 75 475 80 HOH HOH . 
E 5 HOH A 76 476 81 HOH HOH . 
E 5 HOH A 77 477 82 HOH HOH . 
E 5 HOH A 78 478 92 HOH HOH . 
E 5 HOH A 79 479 74 HOH HOH . 
E 5 HOH A 80 480 86 HOH HOH . 
E 5 HOH A 81 481 33 HOH HOH . 
E 5 HOH A 82 482 70 HOH HOH . 
E 5 HOH A 83 483 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . B 2 30.771 -6.081 -12.246 1 29.34 ? N SAH 301 A 1 
HETATM 2 C CA SAH . . . B 2 31.773 -6.936 -12.871 1 29.59 ? CA SAH 301 A 1 
HETATM 3 C CB SAH . . . B 2 33.156 -6.665 -12.289 1 23.82 ? CB SAH 301 A 1 
HETATM 4 C CG SAH . . . B 2 33.399 -5.279 -11.699 1 27.17 ? CG SAH 301 A 1 
HETATM 5 S SD SAH . . . B 2 35.174 -4.991 -11.474 1 29.23 ? SD SAH 301 A 1 
HETATM 6 C C SAH . . . B 2 31.45 -8.421 -12.729 1 29.88 ? C SAH 301 A 1 
HETATM 7 O O SAH . . . B 2 30.972 -8.878 -11.692 1 30.32 ? O SAH 301 A 1 
HETATM 8 O OXT SAH . . . B 2 31.668 -9.203 -13.656 1 28.87 ? OXT SAH 301 A 1 
HETATM 9 C C5' SAH . . . B 2 34.925 -3.204 -11.329 1 29.82 ? C5' SAH 301 A 1 
HETATM 10 C C4' SAH . . . B 2 35.08 -2.448 -12.642 1 34.57 ? C4' SAH 301 A 1 
HETATM 11 O O4' SAH . . . B 2 34.536 -1.153 -12.497 1 32.33 ? O4' SAH 301 A 1 
HETATM 12 C C3' SAH . . . B 2 36.532 -2.271 -13.063 1 34.82 ? C3' SAH 301 A 1 
HETATM 13 O O3' SAH . . . B 2 36.742 -2.932 -14.288 1 36.05 ? O3' SAH 301 A 1 
HETATM 14 C C2' SAH . . . B 2 36.723 -0.779 -13.255 1 34.27 ? C2' SAH 301 A 1 
HETATM 15 O O2' SAH . . . B 2 37.331 -0.506 -14.497 1 33.89 ? O2' SAH 301 A 1 
HETATM 16 C C1' SAH . . . B 2 35.31 -0.224 -13.226 1 32.17 ? C1' SAH 301 A 1 
HETATM 17 N N9 SAH . . . B 2 35.221 1.098 -12.586 1 27.54 ? N9 SAH 301 A 1 
HETATM 18 C C8 SAH . . . B 2 35.887 1.534 -11.47 1 27.33 ? C8 SAH 301 A 1 
HETATM 19 N N7 SAH . . . B 2 35.504 2.808 -11.221 1 28.44 ? N7 SAH 301 A 1 
HETATM 20 C C5 SAH . . . B 2 34.606 3.184 -12.158 1 24.51 ? C5 SAH 301 A 1 
HETATM 21 C C6 SAH . . . B 2 33.907 4.364 -12.371 1 26.52 ? C6 SAH 301 A 1 
HETATM 22 N N6 SAH . . . B 2 34.073 5.4 -11.554 1 29.09 ? N6 SAH 301 A 1 
HETATM 23 N N1 SAH . . . B 2 33.037 4.453 -13.438 1 30.72 ? N1 SAH 301 A 1 
HETATM 24 C C2 SAH . . . B 2 32.863 3.38 -14.286 1 29.78 ? C2 SAH 301 A 1 
HETATM 25 N N3 SAH . . . B 2 33.562 2.212 -14.069 1 24.93 ? N3 SAH 301 A 1 
HETATM 26 C C4 SAH . . . B 2 34.418 2.117 -13.022 1 25.25 ? C4 SAH 301 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#