data_7XGI # _model_server_result.job_id CVaYdmzSNWnCTPEmWUrWBg _model_server_result.datetime_utc '2024-11-23 22:48:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7XGI # _exptl.entry_id 7XGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 413.169 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Opicapone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7XGI _cell.length_a 50.756 _cell.length_b 50.756 _cell.length_c 168.241 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 143 A ASP 141 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A OD2 ASP 171 A ASP 169 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc3 A OD1 ASN 172 A ASN 170 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc4 C O23 DNI . A DNI 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc5 C O24 DNI . A DNI 302 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc6 D MG MG . A MG 303 1_555 E O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? # _chem_comp.formula 'C15 H10 Cl2 N4 O6' _chem_comp.formula_weight 413.169 _chem_comp.id DNI _chem_comp.mon_nstd_flag . _chem_comp.name Opicapone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 5-[3-[2,5-bis(chloranyl)-4,6-dimethyl-1-oxidanidyl-pyridin-1-ium-3-yl]-1,2,4-oxadiazol-5-yl]-3-nitro-benzene-1,2-diol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O27 N25 DNI sing 83 n n O24 C20 DNI sing 84 n n N25 O26 DNI doub 85 n n N25 C19 DNI sing 86 n n C20 C19 DNI doub 87 n y C20 C21 DNI sing 88 n y C19 C18 DNI sing 89 n y O23 C21 DNI sing 90 n n C21 C22 DNI doub 91 n y C18 C17 DNI doub 92 n y C22 C17 DNI sing 93 n y C17 C15 DNI sing 94 n n O14 C15 DNI sing 95 n y O14 N13 DNI sing 96 n y C15 N16 DNI doub 97 n y N13 C12 DNI doub 98 n y N16 C12 DNI sing 99 n y C01 C02 DNI sing 100 n n C12 C03 DNI sing 101 n n C02 C03 DNI doub 102 n y C02 C07 DNI sing 103 n y C03 C04 DNI sing 104 n y CL1 C07 DNI sing 105 n n C07 C06 DNI doub 106 n y C04 CL2 DNI sing 107 n n C04 N05 DNI doub 108 n y C06 N05 DNI sing 109 n y C06 C09 DNI sing 110 n n N05 O10 DNI sing 111 n n C18 H1 DNI sing 112 n n C22 H2 DNI sing 113 n n C01 H3 DNI sing 114 n n C01 H4 DNI sing 115 n n C01 H5 DNI sing 116 n n C09 H6 DNI sing 117 n n C09 H7 DNI sing 118 n n C09 H8 DNI sing 119 n n O23 H10 DNI sing 120 n n O24 H11 DNI sing 121 n n # _atom_sites.entry_id 7XGI _atom_sites.fract_transf_matrix[1][1] 0.019702 _atom_sites.fract_transf_matrix[1][2] 0.011375 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005944 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 DNI A 1 302 1 DNI OCP . D 4 MG A 1 303 1 MG MG . E 5 HOH A 1 401 87 HOH HOH . E 5 HOH A 2 402 68 HOH HOH . E 5 HOH A 3 403 45 HOH HOH . E 5 HOH A 4 404 19 HOH HOH . E 5 HOH A 5 405 32 HOH HOH . E 5 HOH A 6 406 23 HOH HOH . E 5 HOH A 7 407 83 HOH HOH . E 5 HOH A 8 408 11 HOH HOH . E 5 HOH A 9 409 22 HOH HOH . E 5 HOH A 10 410 91 HOH HOH . E 5 HOH A 11 411 41 HOH HOH . E 5 HOH A 12 412 6 HOH HOH . E 5 HOH A 13 413 71 HOH HOH . E 5 HOH A 14 414 5 HOH HOH . E 5 HOH A 15 415 42 HOH HOH . E 5 HOH A 16 416 39 HOH HOH . E 5 HOH A 17 417 9 HOH HOH . E 5 HOH A 18 418 14 HOH HOH . E 5 HOH A 19 419 64 HOH HOH . E 5 HOH A 20 420 88 HOH HOH . E 5 HOH A 21 421 13 HOH HOH . E 5 HOH A 22 422 21 HOH HOH . E 5 HOH A 23 423 49 HOH HOH . E 5 HOH A 24 424 18 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 8 HOH HOH . E 5 HOH A 27 427 89 HOH HOH . E 5 HOH A 28 428 48 HOH HOH . E 5 HOH A 29 429 16 HOH HOH . E 5 HOH A 30 430 61 HOH HOH . E 5 HOH A 31 431 36 HOH HOH . E 5 HOH A 32 432 63 HOH HOH . E 5 HOH A 33 433 34 HOH HOH . E 5 HOH A 34 434 15 HOH HOH . E 5 HOH A 35 435 75 HOH HOH . E 5 HOH A 36 436 12 HOH HOH . E 5 HOH A 37 437 60 HOH HOH . E 5 HOH A 38 438 55 HOH HOH . E 5 HOH A 39 439 35 HOH HOH . E 5 HOH A 40 440 79 HOH HOH . E 5 HOH A 41 441 20 HOH HOH . E 5 HOH A 42 442 54 HOH HOH . E 5 HOH A 43 443 84 HOH HOH . E 5 HOH A 44 444 24 HOH HOH . E 5 HOH A 45 445 73 HOH HOH . E 5 HOH A 46 446 17 HOH HOH . E 5 HOH A 47 447 85 HOH HOH . E 5 HOH A 48 448 43 HOH HOH . E 5 HOH A 49 449 52 HOH HOH . E 5 HOH A 50 450 59 HOH HOH . E 5 HOH A 51 451 44 HOH HOH . E 5 HOH A 52 452 30 HOH HOH . E 5 HOH A 53 453 2 HOH HOH . E 5 HOH A 54 454 37 HOH HOH . E 5 HOH A 55 455 28 HOH HOH . E 5 HOH A 56 456 7 HOH HOH . E 5 HOH A 57 457 50 HOH HOH . E 5 HOH A 58 458 31 HOH HOH . E 5 HOH A 59 459 46 HOH HOH . E 5 HOH A 60 460 78 HOH HOH . E 5 HOH A 61 461 57 HOH HOH . E 5 HOH A 62 462 56 HOH HOH . E 5 HOH A 63 463 76 HOH HOH . E 5 HOH A 64 464 58 HOH HOH . E 5 HOH A 65 465 77 HOH HOH . E 5 HOH A 66 466 26 HOH HOH . E 5 HOH A 67 467 38 HOH HOH . E 5 HOH A 68 468 90 HOH HOH . E 5 HOH A 69 469 27 HOH HOH . E 5 HOH A 70 470 53 HOH HOH . E 5 HOH A 71 471 47 HOH HOH . E 5 HOH A 72 472 51 HOH HOH . E 5 HOH A 73 473 62 HOH HOH . E 5 HOH A 74 474 72 HOH HOH . E 5 HOH A 75 475 80 HOH HOH . E 5 HOH A 76 476 81 HOH HOH . E 5 HOH A 77 477 82 HOH HOH . E 5 HOH A 78 478 92 HOH HOH . E 5 HOH A 79 479 74 HOH HOH . E 5 HOH A 80 480 86 HOH HOH . E 5 HOH A 81 481 33 HOH HOH . E 5 HOH A 82 482 70 HOH HOH . E 5 HOH A 83 483 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 DNI . . . C 3 40.189 -8.511 -3.294 1 51.27 ? C12 DNI 302 A 1 HETATM 2 C C15 DNI . . . C 3 38.879 -7.598 -4.766 1 43.91 ? C15 DNI 302 A 1 HETATM 3 C C17 DNI . . . C 3 37.642 -7.176 -5.547 1 36.02 ? C17 DNI 302 A 1 HETATM 4 C C18 DNI . . . C 3 37.654 -5.951 -6.18 1 34.27 ? C18 DNI 302 A 1 HETATM 5 C C19 DNI . . . C 3 36.551 -5.53 -6.895 1 31.12 ? C19 DNI 302 A 1 HETATM 6 C C20 DNI . . . C 3 35.428 -6.331 -6.976 1 27.75 ? C20 DNI 302 A 1 HETATM 7 C C22 DNI . . . C 3 36.522 -7.988 -5.621 1 30.6 ? C22 DNI 302 A 1 HETATM 8 C C01 DNI . . . C 3 41.124 -11.284 -3.651 1 77.32 ? C01 DNI 302 A 1 HETATM 9 C C02 DNI . . . C 3 41.12 -10.627 -2.271 1 77.88 ? C02 DNI 302 A 1 HETATM 10 C C03 DNI . . . C 3 40.683 -9.323 -2.107 1 71.48 ? C03 DNI 302 A 1 HETATM 11 C C04 DNI . . . C 3 40.687 -8.759 -0.844 1 81.99 ? C04 DNI 302 A 1 HETATM 12 C C06 DNI . . . C 3 41.533 -10.693 0.078 1 85.2 ? C06 DNI 302 A 1 HETATM 13 C C07 DNI . . . C 3 41.553 -11.323 -1.155 1 84.67 ? C07 DNI 302 A 1 HETATM 14 C C09 DNI . . . C 3 42.002 -11.427 1.328 1 86.35 ? C09 DNI 302 A 1 HETATM 15 C C21 DNI . . . C 3 35.415 -7.562 -6.339 1 28.64 ? C21 DNI 302 A 1 HETATM 16 N N05 DNI . . . C 3 41.109 -9.455 0.191 1 85.36 ? N05 DNI 302 A 1 HETATM 17 N N13 DNI . . . C 3 40.912 -7.777 -4.138 1 48.25 ? N13 DNI 302 A 1 HETATM 18 N N16 DNI . . . C 3 38.886 -8.391 -3.694 1 46.55 ? N16 DNI 302 A 1 HETATM 19 N N25 DNI . . . C 3 36.609 -4.239 -7.542 1 29.05 ? N25 DNI 302 A 1 HETATM 20 O O10 DNI . . . C 3 41.107 -8.858 1.461 1 86.74 -1 O10 DNI 302 A 1 HETATM 21 O O14 DNI . . . C 3 40.104 -7.228 -5.022 1 48.55 ? O14 DNI 302 A 1 HETATM 22 O O23 DNI . . . C 3 34.274 -8.368 -6.423 1 25.8 ? O23 DNI 302 A 1 HETATM 23 O O24 DNI . . . C 3 34.311 -5.901 -7.698 1 27.74 ? O24 DNI 302 A 1 HETATM 24 O O26 DNI . . . C 3 37.814 -3.532 -7.481 1 38.01 ? O26 DNI 302 A 1 HETATM 25 O O27 DNI . . . C 3 35.496 -3.7 -8.206 1 37.54 -1 O27 DNI 302 A 1 HETATM 26 CL CL1 DNI . . . C 3 42.126 -13 -1.312 1 92 ? CL1 DNI 302 A 1 HETATM 27 CL CL2 DNI . . . C 3 40.128 -7.081 -0.615 1 87.08 ? CL2 DNI 302 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #