data_7XH4 # _model_server_result.job_id cdN3KI0bdgmZCY2MIbeyuQ _model_server_result.datetime_utc '2025-03-05 19:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7XH4 # _exptl.entry_id 7XH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 524.609 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Safracin A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7XH4 _cell.length_a 68.727 _cell.length_b 68.727 _cell.length_c 157.286 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H36 N4 O6' _chem_comp.formula_weight 524.609 _chem_comp.id EN7 _chem_comp.mon_nstd_flag . _chem_comp.name 'Safracin A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C24 EN7 sing 83 n n O2 C28 EN7 sing 84 n n O2 C36 EN7 sing 85 n n O3 C26 EN7 doub 86 n n O4 C27 EN7 doub 87 n n O5 C31 EN7 sing 88 n n O5 C37 EN7 sing 89 n n O6 C34 EN7 doub 90 n n N7 C11 EN7 sing 91 n n N7 C14 EN7 sing 92 n n N7 C15 EN7 sing 93 n n N8 C12 EN7 sing 94 n n N8 C13 EN7 sing 95 n n N8 C22 EN7 sing 96 n n N9 C23 EN7 sing 97 n n N9 C34 EN7 sing 98 n n N10 C35 EN7 sing 99 n n C11 C12 EN7 sing 100 n n C11 C16 EN7 sing 101 n n C12 C18 EN7 sing 102 n n C13 C14 EN7 sing 103 n n C13 C17 EN7 sing 104 n n C15 C20 EN7 sing 105 n n C15 C23 EN7 sing 106 n n C16 C21 EN7 sing 107 n n C17 C19 EN7 sing 108 n n C18 C19 EN7 doub 109 n y C18 C24 EN7 sing 110 n y C19 C25 EN7 sing 111 n y C20 C21 EN7 doub 112 n n C20 C26 EN7 sing 113 n n C21 C27 EN7 sing 114 n n C24 C28 EN7 doub 115 n y C25 C29 EN7 doub 116 n y C26 C31 EN7 sing 117 n n C27 C30 EN7 sing 118 n n C28 C29 EN7 sing 119 n y C29 C32 EN7 sing 120 n n C30 C31 EN7 doub 121 n n C30 C33 EN7 sing 122 n n C34 C35 EN7 sing 123 n n C35 C38 EN7 sing 124 n n O1 H1 EN7 sing 125 n n N9 H4 EN7 sing 126 n n N10 H5 EN7 sing 127 n n N10 H6 EN7 sing 128 n n C11 H8 EN7 sing 129 n n C12 H9 EN7 sing 130 n n C13 H10 EN7 sing 131 n n C14 H11 EN7 sing 132 n n C14 H12 EN7 sing 133 n n C15 H13 EN7 sing 134 n n C16 H14 EN7 sing 135 n n C16 H15 EN7 sing 136 n n C17 H16 EN7 sing 137 n n C17 H17 EN7 sing 138 n n C22 H18 EN7 sing 139 n n C22 H19 EN7 sing 140 n n C22 H20 EN7 sing 141 n n C23 H21 EN7 sing 142 n n C23 H22 EN7 sing 143 n n C25 H23 EN7 sing 144 n n C32 H24 EN7 sing 145 n n C32 H25 EN7 sing 146 n n C32 H26 EN7 sing 147 n n C33 H27 EN7 sing 148 n n C33 H28 EN7 sing 149 n n C33 H29 EN7 sing 150 n n C35 H30 EN7 sing 151 n n C36 H31 EN7 sing 152 n n C36 H32 EN7 sing 153 n n C36 H33 EN7 sing 154 n n C37 H34 EN7 sing 155 n n C37 H35 EN7 sing 156 n n C37 H36 EN7 sing 157 n n C38 H37 EN7 sing 158 n n C38 H38 EN7 sing 159 n n C38 H39 EN7 sing 160 n n # _atom_sites.entry_id 7XH4 _atom_sites.fract_transf_matrix[1][1] 0.01455 _atom_sites.fract_transf_matrix[1][2] 0.008401 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EN7 A 1 201 181 EN7 SAC . C 3 NDP A 1 202 186 NDP NDP . D 4 HOH A 1 301 20 HOH HOH . D 4 HOH A 2 302 61 HOH HOH . D 4 HOH A 3 303 9 HOH HOH . D 4 HOH A 4 304 46 HOH HOH . D 4 HOH A 5 305 44 HOH HOH . D 4 HOH A 6 306 43 HOH HOH . D 4 HOH A 7 307 8 HOH HOH . D 4 HOH A 8 308 5 HOH HOH . D 4 HOH A 9 309 73 HOH HOH . D 4 HOH A 10 310 14 HOH HOH . D 4 HOH A 11 311 24 HOH HOH . D 4 HOH A 12 312 63 HOH HOH . D 4 HOH A 13 313 22 HOH HOH . D 4 HOH A 14 314 4 HOH HOH . D 4 HOH A 15 315 52 HOH HOH . D 4 HOH A 16 316 6 HOH HOH . D 4 HOH A 17 317 11 HOH HOH . D 4 HOH A 18 318 65 HOH HOH . D 4 HOH A 19 319 70 HOH HOH . D 4 HOH A 20 320 27 HOH HOH . D 4 HOH A 21 321 62 HOH HOH . D 4 HOH A 22 322 17 HOH HOH . D 4 HOH A 23 323 42 HOH HOH . D 4 HOH A 24 324 58 HOH HOH . D 4 HOH A 25 325 36 HOH HOH . D 4 HOH A 26 326 68 HOH HOH . D 4 HOH A 27 327 38 HOH HOH . D 4 HOH A 28 328 13 HOH HOH . D 4 HOH A 29 329 18 HOH HOH . D 4 HOH A 30 330 2 HOH HOH . D 4 HOH A 31 331 41 HOH HOH . D 4 HOH A 32 332 1 HOH HOH . D 4 HOH A 33 333 3 HOH HOH . D 4 HOH A 34 334 29 HOH HOH . D 4 HOH A 35 335 32 HOH HOH . D 4 HOH A 36 336 10 HOH HOH . D 4 HOH A 37 337 26 HOH HOH . D 4 HOH A 38 338 25 HOH HOH . D 4 HOH A 39 339 37 HOH HOH . D 4 HOH A 40 340 56 HOH HOH . D 4 HOH A 41 341 47 HOH HOH . D 4 HOH A 42 342 12 HOH HOH . D 4 HOH A 43 343 75 HOH HOH . D 4 HOH A 44 344 34 HOH HOH . D 4 HOH A 45 345 31 HOH HOH . D 4 HOH A 46 346 33 HOH HOH . D 4 HOH A 47 347 51 HOH HOH . D 4 HOH A 48 348 35 HOH HOH . D 4 HOH A 49 349 74 HOH HOH . D 4 HOH A 50 350 39 HOH HOH . D 4 HOH A 51 351 16 HOH HOH . D 4 HOH A 52 352 21 HOH HOH . D 4 HOH A 53 353 7 HOH HOH . D 4 HOH A 54 354 19 HOH HOH . D 4 HOH A 55 355 28 HOH HOH . D 4 HOH A 56 356 55 HOH HOH . D 4 HOH A 57 357 45 HOH HOH . D 4 HOH A 58 358 67 HOH HOH . D 4 HOH A 59 359 71 HOH HOH . D 4 HOH A 60 360 50 HOH HOH . D 4 HOH A 61 361 40 HOH HOH . D 4 HOH A 62 362 48 HOH HOH . D 4 HOH A 63 363 49 HOH HOH . D 4 HOH A 64 364 72 HOH HOH . D 4 HOH A 65 365 57 HOH HOH . D 4 HOH A 66 366 54 HOH HOH . D 4 HOH A 67 367 69 HOH HOH . D 4 HOH A 68 368 60 HOH HOH . D 4 HOH A 69 369 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 EN7 . . . B 2 13.187 -10.881 -12.144 1 35.34 ? O1 EN7 201 A 1 HETATM 2 O O2 EN7 . . . B 2 13.18 -8.055 -12.209 1 42.72 ? O2 EN7 201 A 1 HETATM 3 O O3 EN7 . . . B 2 17.659 -15.408 -7.239 1 35.77 ? O3 EN7 201 A 1 HETATM 4 O O4 EN7 . . . B 2 13.2 -13.316 -8.464 1 38.11 ? O4 EN7 201 A 1 HETATM 5 O O5 EN7 . . . B 2 15.649 -16.073 -5.673 1 36.67 ? O5 EN7 201 A 1 HETATM 6 O O6 EN7 . . . B 2 16.786 -10.673 -6.376 1 46.25 ? O6 EN7 201 A 1 HETATM 7 N N7 EN7 . . . B 2 17.52 -13.174 -10.77 1 32.66 ? N7 EN7 201 A 1 HETATM 8 N N8 EN7 . . . B 2 16.945 -12.665 -13.455 1 32.78 ? N8 EN7 201 A 1 HETATM 9 N N9 EN7 . . . B 2 17.852 -12.071 -7.649 1 36.46 ? N9 EN7 201 A 1 HETATM 10 N N10 EN7 . . . B 2 18.698 -9.853 -9.296 1 34.78 ? N10 EN7 201 A 1 HETATM 11 C C11 EN7 . . . B 2 16.074 -13.105 -11.164 1 32.19 ? C11 EN7 201 A 1 HETATM 12 C C12 EN7 . . . B 2 16.131 -12.171 -12.516 1 34.48 ? C12 EN7 201 A 1 HETATM 13 C C13 EN7 . . . B 2 17.924 -12.101 -12.709 1 34.85 ? C13 EN7 201 A 1 HETATM 14 C C14 EN7 . . . B 2 18.468 -12.899 -11.707 1 29.34 ? C14 EN7 201 A 1 HETATM 15 C C15 EN7 . . . B 2 17.754 -13.691 -9.437 1 35.35 ? C15 EN7 201 A 1 HETATM 16 C C16 EN7 . . . B 2 15.218 -12.566 -10.143 1 30.31 ? C16 EN7 201 A 1 HETATM 17 C C17 EN7 . . . B 2 18.14 -10.472 -12.897 1 31.92 ? C17 EN7 201 A 1 HETATM 18 C C18 EN7 . . . B 2 15.695 -10.792 -12.557 1 35.17 ? C18 EN7 201 A 1 HETATM 19 C C19 EN7 . . . B 2 16.754 -9.814 -12.689 1 35.87 ? C19 EN7 201 A 1 HETATM 20 C C20 EN7 . . . B 2 16.511 -14.082 -8.606 1 34.22 ? C20 EN7 201 A 1 HETATM 21 C C21 EN7 . . . B 2 15.296 -13.488 -8.914 1 35.17 ? C21 EN7 201 A 1 HETATM 22 C C22 EN7 . . . B 2 16.785 -12.16 -14.532 1 32.56 ? C22 EN7 201 A 1 HETATM 23 C C23 EN7 . . . B 2 18.545 -12.56 -8.796 1 34.32 ? C23 EN7 201 A 1 HETATM 24 C C24 EN7 . . . B 2 14.329 -10.148 -12.327 1 36.61 ? C24 EN7 201 A 1 HETATM 25 C C25 EN7 . . . B 2 16.549 -8.532 -12.693 1 35.5 ? C25 EN7 201 A 1 HETATM 26 C C26 EN7 . . . B 2 16.63 -14.91 -7.511 1 31.89 ? C26 EN7 201 A 1 HETATM 27 C C27 EN7 . . . B 2 14.211 -13.795 -8.175 1 34.12 ? C27 EN7 201 A 1 HETATM 28 C C28 EN7 . . . B 2 14.35 -8.721 -12.364 1 36.46 ? C28 EN7 201 A 1 HETATM 29 C C29 EN7 . . . B 2 15.445 -8.094 -12.549 1 38.02 ? C29 EN7 201 A 1 HETATM 30 C C30 EN7 . . . B 2 14.318 -14.65 -7.096 1 34 ? C30 EN7 201 A 1 HETATM 31 C C31 EN7 . . . B 2 15.553 -15.189 -6.762 1 35.05 ? C31 EN7 201 A 1 HETATM 32 C C32 EN7 . . . B 2 15.322 -6.56 -12.573 1 38.44 ? C32 EN7 201 A 1 HETATM 33 C C33 EN7 . . . B 2 13.138 -14.979 -6.233 1 35.35 ? C33 EN7 201 A 1 HETATM 34 C C34 EN7 . . . B 2 17.371 -10.756 -7.41 1 42.2 ? C34 EN7 201 A 1 HETATM 35 C C35 EN7 . . . B 2 17.639 -9.581 -8.372 1 43.09 ? C35 EN7 201 A 1 HETATM 36 C C36 EN7 . . . B 2 12.626 -8.154 -10.945 1 36.36 ? C36 EN7 201 A 1 HETATM 37 C C37 EN7 . . . B 2 16.651 -15.82 -4.751 1 33.72 ? C37 EN7 201 A 1 HETATM 38 C C38 EN7 . . . B 2 16.336 -9.162 -9.084 1 36.12 ? C38 EN7 201 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #