data_7XH4 # _model_server_result.job_id izx8CRvOmvLJHyNvcokubg _model_server_result.datetime_utc '2025-03-05 19:23:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7XH4 # _exptl.entry_id 7XH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7XH4 _cell.length_a 68.727 _cell.length_b 68.727 _cell.length_c 157.286 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 315 n n PA O2A NDP sing 316 n n PA O5B NDP sing 317 n n PA O3 NDP sing 318 n n O2A HOA2 NDP sing 319 n n O5B C5B NDP sing 320 n n C5B C4B NDP sing 321 n n C5B H51A NDP sing 322 n n C5B H52A NDP sing 323 n n C4B O4B NDP sing 324 n n C4B C3B NDP sing 325 n n C4B H4B NDP sing 326 n n O4B C1B NDP sing 327 n n C3B O3B NDP sing 328 n n C3B C2B NDP sing 329 n n C3B H3B NDP sing 330 n n O3B HO3A NDP sing 331 n n C2B O2B NDP sing 332 n n C2B C1B NDP sing 333 n n C2B H2B NDP sing 334 n n O2B P2B NDP sing 335 n n C1B N9A NDP sing 336 n n C1B H1B NDP sing 337 n n N9A C8A NDP sing 338 n y N9A C4A NDP sing 339 n y C8A N7A NDP doub 340 n y C8A H8A NDP sing 341 n n N7A C5A NDP sing 342 n y C5A C6A NDP sing 343 n y C5A C4A NDP doub 344 n y C6A N6A NDP sing 345 n n C6A N1A NDP doub 346 n y N6A H61A NDP sing 347 n n N6A H62A NDP sing 348 n n N1A C2A NDP sing 349 n y C2A N3A NDP doub 350 n y C2A H2A NDP sing 351 n n N3A C4A NDP sing 352 n y O3 PN NDP sing 353 n n PN O1N NDP doub 354 n n PN O2N NDP sing 355 n n PN O5D NDP sing 356 n n O2N H21N NDP sing 357 n n O5D C5D NDP sing 358 n n C5D C4D NDP sing 359 n n C5D H51N NDP sing 360 n n C5D H52N NDP sing 361 n n C4D O4D NDP sing 362 n n C4D C3D NDP sing 363 n n C4D H4D NDP sing 364 n n O4D C1D NDP sing 365 n n C3D O3D NDP sing 366 n n C3D C2D NDP sing 367 n n C3D H3D NDP sing 368 n n O3D HO3N NDP sing 369 n n C2D O2D NDP sing 370 n n C2D C1D NDP sing 371 n n C2D H2D NDP sing 372 n n O2D HO2N NDP sing 373 n n C1D N1N NDP sing 374 n n C1D H1D NDP sing 375 n n N1N C2N NDP sing 376 n n N1N C6N NDP sing 377 n n C2N C3N NDP doub 378 n n C2N H2N NDP sing 379 n n C3N C7N NDP sing 380 n n C3N C4N NDP sing 381 n n C7N O7N NDP doub 382 n n C7N N7N NDP sing 383 n n N7N H71N NDP sing 384 n n N7N H72N NDP sing 385 n n C4N C5N NDP sing 386 n n C4N H41N NDP sing 387 n n C4N H42N NDP sing 388 n n C5N C6N NDP doub 389 n n C5N H5N NDP sing 390 n n C6N H6N NDP sing 391 n n P2B O1X NDP doub 392 n n P2B O2X NDP sing 393 n n P2B O3X NDP sing 394 n n O2X HOP2 NDP sing 395 n n O3X HOP3 NDP sing 396 n n # _atom_sites.entry_id 7XH4 _atom_sites.fract_transf_matrix[1][1] 0.01455 _atom_sites.fract_transf_matrix[1][2] 0.008401 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016801 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EN7 A 1 201 181 EN7 SAC . C 3 NDP A 1 202 186 NDP NDP . D 4 HOH A 1 301 20 HOH HOH . D 4 HOH A 2 302 61 HOH HOH . D 4 HOH A 3 303 9 HOH HOH . D 4 HOH A 4 304 46 HOH HOH . D 4 HOH A 5 305 44 HOH HOH . D 4 HOH A 6 306 43 HOH HOH . D 4 HOH A 7 307 8 HOH HOH . D 4 HOH A 8 308 5 HOH HOH . D 4 HOH A 9 309 73 HOH HOH . D 4 HOH A 10 310 14 HOH HOH . D 4 HOH A 11 311 24 HOH HOH . D 4 HOH A 12 312 63 HOH HOH . D 4 HOH A 13 313 22 HOH HOH . D 4 HOH A 14 314 4 HOH HOH . D 4 HOH A 15 315 52 HOH HOH . D 4 HOH A 16 316 6 HOH HOH . D 4 HOH A 17 317 11 HOH HOH . D 4 HOH A 18 318 65 HOH HOH . D 4 HOH A 19 319 70 HOH HOH . D 4 HOH A 20 320 27 HOH HOH . D 4 HOH A 21 321 62 HOH HOH . D 4 HOH A 22 322 17 HOH HOH . D 4 HOH A 23 323 42 HOH HOH . D 4 HOH A 24 324 58 HOH HOH . D 4 HOH A 25 325 36 HOH HOH . D 4 HOH A 26 326 68 HOH HOH . D 4 HOH A 27 327 38 HOH HOH . D 4 HOH A 28 328 13 HOH HOH . D 4 HOH A 29 329 18 HOH HOH . D 4 HOH A 30 330 2 HOH HOH . D 4 HOH A 31 331 41 HOH HOH . D 4 HOH A 32 332 1 HOH HOH . D 4 HOH A 33 333 3 HOH HOH . D 4 HOH A 34 334 29 HOH HOH . D 4 HOH A 35 335 32 HOH HOH . D 4 HOH A 36 336 10 HOH HOH . D 4 HOH A 37 337 26 HOH HOH . D 4 HOH A 38 338 25 HOH HOH . D 4 HOH A 39 339 37 HOH HOH . D 4 HOH A 40 340 56 HOH HOH . D 4 HOH A 41 341 47 HOH HOH . D 4 HOH A 42 342 12 HOH HOH . D 4 HOH A 43 343 75 HOH HOH . D 4 HOH A 44 344 34 HOH HOH . D 4 HOH A 45 345 31 HOH HOH . D 4 HOH A 46 346 33 HOH HOH . D 4 HOH A 47 347 51 HOH HOH . D 4 HOH A 48 348 35 HOH HOH . D 4 HOH A 49 349 74 HOH HOH . D 4 HOH A 50 350 39 HOH HOH . D 4 HOH A 51 351 16 HOH HOH . D 4 HOH A 52 352 21 HOH HOH . D 4 HOH A 53 353 7 HOH HOH . D 4 HOH A 54 354 19 HOH HOH . D 4 HOH A 55 355 28 HOH HOH . D 4 HOH A 56 356 55 HOH HOH . D 4 HOH A 57 357 45 HOH HOH . D 4 HOH A 58 358 67 HOH HOH . D 4 HOH A 59 359 71 HOH HOH . D 4 HOH A 60 360 50 HOH HOH . D 4 HOH A 61 361 40 HOH HOH . D 4 HOH A 62 362 48 HOH HOH . D 4 HOH A 63 363 49 HOH HOH . D 4 HOH A 64 364 72 HOH HOH . D 4 HOH A 65 365 57 HOH HOH . D 4 HOH A 66 366 54 HOH HOH . D 4 HOH A 67 367 69 HOH HOH . D 4 HOH A 68 368 60 HOH HOH . D 4 HOH A 69 369 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 22.918 -16.06 -21.435 1 31.98 ? PA NDP 202 A 1 HETATM 2 O O1A NDP . . . C 3 22.157 -15.166 -20.5 1 28.64 ? O1A NDP 202 A 1 HETATM 3 O O2A NDP . . . C 3 23.964 -17.022 -20.952 1 31.57 ? O2A NDP 202 A 1 HETATM 4 O O5B NDP . . . C 3 23.649 -15.118 -22.541 1 35.72 ? O5B NDP 202 A 1 HETATM 5 C C5B NDP . . . C 3 24.279 -16.014 -23.412 1 34.99 ? C5B NDP 202 A 1 HETATM 6 C C4B NDP . . . C 3 25.048 -15.143 -24.381 1 42.13 ? C4B NDP 202 A 1 HETATM 7 O O4B NDP . . . C 3 26.166 -14.517 -23.721 1 45.19 ? O4B NDP 202 A 1 HETATM 8 C C3B NDP . . . C 3 25.607 -15.917 -25.582 1 45.61 ? C3B NDP 202 A 1 HETATM 9 O O3B NDP . . . C 3 24.611 -16.093 -26.553 1 40.92 ? O3B NDP 202 A 1 HETATM 10 C C2B NDP . . . C 3 26.491 -14.794 -26.091 1 45.79 ? C2B NDP 202 A 1 HETATM 11 O O2B NDP . . . C 3 25.766 -13.767 -26.474 1 50.1 ? O2B NDP 202 A 1 HETATM 12 C C1B NDP . . . C 3 27.155 -14.326 -24.753 1 44.13 ? C1B NDP 202 A 1 HETATM 13 N N9A NDP . . . C 3 28.371 -15.028 -24.357 1 42.9 ? N9A NDP 202 A 1 HETATM 14 C C8A NDP . . . C 3 28.493 -16.081 -23.459 1 43.17 ? C8A NDP 202 A 1 HETATM 15 N N7A NDP . . . C 3 29.766 -16.487 -23.278 1 45.64 ? N7A NDP 202 A 1 HETATM 16 C C5A NDP . . . C 3 30.505 -15.634 -24.092 1 44.89 ? C5A NDP 202 A 1 HETATM 17 C C6A NDP . . . C 3 31.868 -15.548 -24.339 1 44.75 ? C6A NDP 202 A 1 HETATM 18 N N6A NDP . . . C 3 32.748 -16.415 -23.709 1 49.7 ? N6A NDP 202 A 1 HETATM 19 N N1A NDP . . . C 3 32.374 -14.615 -25.197 1 48.41 ? N1A NDP 202 A 1 HETATM 20 C C2A NDP . . . C 3 31.432 -13.792 -25.777 1 48.13 ? C2A NDP 202 A 1 HETATM 21 N N3A NDP . . . C 3 30.098 -13.751 -25.648 1 44.83 ? N3A NDP 202 A 1 HETATM 22 C C4A NDP . . . C 3 29.649 -14.709 -24.773 1 46.42 ? C4A NDP 202 A 1 HETATM 23 O O3 NDP . . . C 3 21.712 -16.84 -22.28 1 39.56 ? O3 NDP 202 A 1 HETATM 24 P PN NDP . . . C 3 20.963 -18.034 -21.476 1 30.87 ? PN NDP 202 A 1 HETATM 25 O O1N NDP . . . C 3 19.8 -18.346 -22.325 1 36 ? O1N NDP 202 A 1 HETATM 26 O O2N NDP . . . C 3 21.845 -19.09 -20.85 1 29.18 ? O2N NDP 202 A 1 HETATM 27 O O5D NDP . . . C 3 20.147 -17.383 -20.063 1 30.04 ? O5D NDP 202 A 1 HETATM 28 C C5D NDP . . . C 3 19.262 -16.442 -20.502 1 27.73 ? C5D NDP 202 A 1 HETATM 29 C C4D NDP . . . C 3 18.017 -16.525 -19.639 1 32.7 ? C4D NDP 202 A 1 HETATM 30 O O4D NDP . . . C 3 18.367 -16.787 -18.251 1 30.86 ? O4D NDP 202 A 1 HETATM 31 C C3D NDP . . . C 3 17.273 -15.157 -19.684 1 28.31 ? C3D NDP 202 A 1 HETATM 32 O O3D NDP . . . C 3 15.932 -15.42 -19.94 1 31.52 ? O3D NDP 202 A 1 HETATM 33 C C2D NDP . . . C 3 17.426 -14.663 -18.263 1 31.38 ? C2D NDP 202 A 1 HETATM 34 O O2D NDP . . . C 3 16.314 -13.953 -17.839 1 30.8 ? O2D NDP 202 A 1 HETATM 35 C C1D NDP . . . C 3 17.481 -16.016 -17.476 1 28.03 ? C1D NDP 202 A 1 HETATM 36 N N1N NDP . . . C 3 18.055 -15.836 -16.108 1 29.21 ? N1N NDP 202 A 1 HETATM 37 C C2N NDP . . . C 3 17.388 -16.284 -14.986 1 25.35 ? C2N NDP 202 A 1 HETATM 38 C C3N NDP . . . C 3 17.987 -16.271 -13.753 1 31.15 ? C3N NDP 202 A 1 HETATM 39 C C7N NDP . . . C 3 17.227 -16.788 -12.596 1 29.28 ? C7N NDP 202 A 1 HETATM 40 O O7N NDP . . . C 3 17.577 -16.659 -11.412 1 23.05 ? O7N NDP 202 A 1 HETATM 41 N N7N NDP . . . C 3 16.066 -17.503 -12.868 1 22.17 ? N7N NDP 202 A 1 HETATM 42 C C4N NDP . . . C 3 19.366 -15.777 -13.55 1 29.93 ? C4N NDP 202 A 1 HETATM 43 C C5N NDP . . . C 3 19.92 -15.163 -14.782 1 29.78 ? C5N NDP 202 A 1 HETATM 44 C C6N NDP . . . C 3 19.294 -15.212 -15.961 1 30.94 ? C6N NDP 202 A 1 HETATM 45 P P2B NDP . . . C 3 26.051 -13.275 -28.146 1 51.97 ? P2B NDP 202 A 1 HETATM 46 O O1X NDP . . . C 3 24.968 -14.034 -28.88 1 55.43 ? O1X NDP 202 A 1 HETATM 47 O O2X NDP . . . C 3 27.513 -13.675 -28.397 1 43.72 ? O2X NDP 202 A 1 HETATM 48 O O3X NDP . . . C 3 25.762 -11.816 -27.89 1 48.53 ? O3X NDP 202 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #