data_7XH6 # _model_server_result.job_id rSoJHarmQLmvkSo_V3EbvA _model_server_result.datetime_utc '2024-11-14 20:41:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xh6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1203}' # _entry.id 7XH6 # _exptl.entry_id 7XH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 534.597 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6S)-1-[3,4-bis(fluoranyl)phenyl]-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(4-methoxycyclohexyl)benzimidazol-2-yl]piperidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.13 _cell.angle_gamma 90 _cell.entry_id 7XH6 _cell.length_a 48.457 _cell.length_b 33.713 _cell.length_c 78.342 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C30 H32 F2 N4 O3' _chem_comp.formula_weight 534.597 _chem_comp.id JHL _chem_comp.mon_nstd_flag . _chem_comp.name (6S)-1-[3,4-bis(fluoranyl)phenyl]-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-(4-methoxycyclohexyl)benzimidazol-2-yl]piperidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CCS1477;Inobrodib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBC CBD JHL sing 195 n n CBC CBB JHL sing 196 n n CBD CAR JHL sing 197 n n CBB CBA JHL sing 198 n n CAV CAW JHL sing 199 n n CAV CAU JHL sing 200 n n CAR NAZ JHL sing 201 n n CAR CAO JHL sing 202 n n CBA NAZ JHL sing 203 n n CBA OBM JHL doub 204 n n CAW CAQ JHL sing 205 n n CAY OAX JHL sing 206 n n NAZ CBE JHL sing 207 n n OAX CAU JHL sing 208 n n CAO NAP JHL sing 209 n y CAO NAN JHL doub 210 n y CAQ NAP JHL sing 211 n n CAQ CAS JHL sing 212 n n CAU CAT JHL sing 213 n n NAP CAK JHL sing 214 n y NAN CAJ JHL sing 215 n y CBJ CBE JHL doub 216 n y CBJ CBI JHL sing 217 n y CBE CBF JHL sing 218 n y CAT CAS JHL sing 219 n n CAK CAJ JHL doub 220 n y CAK CAL JHL sing 221 n y CAJ CAI JHL sing 222 n y CBI CBH JHL doub 223 n y CAL CAM JHL doub 224 n y CBF CBG JHL doub 225 n y CAI CAH JHL doub 226 n y CAG CAE JHL sing 227 n n CAM CAH JHL sing 228 n y CAH CAA JHL sing 229 n n CBH CBG JHL sing 230 n y CBH FBK JHL sing 231 n n CBG FBL JHL sing 232 n n CAE CAA JHL doub 233 n y CAE OAD JHL sing 234 n y CAA CAB JHL sing 235 n y OAD NAC JHL sing 236 n y CAB NAC JHL doub 237 n y CAB CAF JHL sing 238 n n CAS H1 JHL sing 239 n n CAS H2 JHL sing 240 n n CAT H3 JHL sing 241 n n CAT H4 JHL sing 242 n n CAU H5 JHL sing 243 n n CAY H6 JHL sing 244 n n CAY H7 JHL sing 245 n n CAY H8 JHL sing 246 n n CAV H9 JHL sing 247 n n CAV H10 JHL sing 248 n n CAW H11 JHL sing 249 n n CAW H12 JHL sing 250 n n CAQ H13 JHL sing 251 n n CAL H14 JHL sing 252 n n CAM H15 JHL sing 253 n n CAG H16 JHL sing 254 n n CAG H17 JHL sing 255 n n CAG H18 JHL sing 256 n n CAF H19 JHL sing 257 n n CAF H20 JHL sing 258 n n CAF H21 JHL sing 259 n n CAI H22 JHL sing 260 n n CAR H23 JHL sing 261 n n CBD H24 JHL sing 262 n n CBD H25 JHL sing 263 n n CBC H26 JHL sing 264 n n CBC H27 JHL sing 265 n n CBB H28 JHL sing 266 n n CBB H29 JHL sing 267 n n CBF H30 JHL sing 268 n n CBI H31 JHL sing 269 n n CBJ H32 JHL sing 270 n n # _atom_sites.entry_id 7XH6 _atom_sites.fract_transf_matrix[1][1] 0.020637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001853 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029662 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012816 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 1201 1201 GOL GOL . D 3 DMS A 1 1202 1202 DMS DMS . E 4 JHL A 1 1203 1 JHL JHL . F 4 JHL B 1 1201 2 JHL JHL . G 5 HOH A 1 1301 76 HOH HOH . G 5 HOH A 2 1302 40 HOH HOH . G 5 HOH A 3 1303 6 HOH HOH . G 5 HOH A 4 1304 80 HOH HOH . G 5 HOH A 5 1305 42 HOH HOH . G 5 HOH A 6 1306 45 HOH HOH . G 5 HOH A 7 1307 17 HOH HOH . G 5 HOH A 8 1308 86 HOH HOH . G 5 HOH A 9 1309 35 HOH HOH . G 5 HOH A 10 1310 43 HOH HOH . G 5 HOH A 11 1311 9 HOH HOH . G 5 HOH A 12 1312 68 HOH HOH . G 5 HOH A 13 1313 7 HOH HOH . G 5 HOH A 14 1314 62 HOH HOH . G 5 HOH A 15 1315 87 HOH HOH . G 5 HOH A 16 1316 66 HOH HOH . G 5 HOH A 17 1317 44 HOH HOH . G 5 HOH A 18 1318 53 HOH HOH . G 5 HOH A 19 1319 12 HOH HOH . G 5 HOH A 20 1320 70 HOH HOH . G 5 HOH A 21 1321 31 HOH HOH . G 5 HOH A 22 1322 13 HOH HOH . G 5 HOH A 23 1323 19 HOH HOH . G 5 HOH A 24 1324 16 HOH HOH . G 5 HOH A 25 1325 29 HOH HOH . G 5 HOH A 26 1326 83 HOH HOH . G 5 HOH A 27 1327 14 HOH HOH . G 5 HOH A 28 1328 48 HOH HOH . G 5 HOH A 29 1329 81 HOH HOH . G 5 HOH A 30 1330 24 HOH HOH . G 5 HOH A 31 1331 23 HOH HOH . G 5 HOH A 32 1332 36 HOH HOH . G 5 HOH A 33 1333 67 HOH HOH . G 5 HOH A 34 1334 3 HOH HOH . G 5 HOH A 35 1335 11 HOH HOH . G 5 HOH A 36 1336 64 HOH HOH . G 5 HOH A 37 1337 8 HOH HOH . G 5 HOH A 38 1338 33 HOH HOH . G 5 HOH A 39 1339 84 HOH HOH . G 5 HOH A 40 1340 10 HOH HOH . G 5 HOH A 41 1341 4 HOH HOH . G 5 HOH A 42 1342 73 HOH HOH . G 5 HOH A 43 1343 37 HOH HOH . G 5 HOH A 44 1344 55 HOH HOH . G 5 HOH A 45 1345 82 HOH HOH . G 5 HOH A 46 1346 69 HOH HOH . G 5 HOH A 47 1347 32 HOH HOH . G 5 HOH A 48 1348 21 HOH HOH . G 5 HOH A 49 1349 50 HOH HOH . G 5 HOH A 50 1350 27 HOH HOH . G 5 HOH A 51 1351 20 HOH HOH . G 5 HOH A 52 1352 41 HOH HOH . G 5 HOH A 53 1353 63 HOH HOH . G 5 HOH A 54 1354 51 HOH HOH . G 5 HOH A 55 1355 77 HOH HOH . G 5 HOH A 56 1356 71 HOH HOH . G 5 HOH A 57 1357 72 HOH HOH . G 5 HOH A 58 1358 65 HOH HOH . G 5 HOH A 59 1359 54 HOH HOH . G 5 HOH A 60 1360 38 HOH HOH . G 5 HOH A 61 1361 52 HOH HOH . G 5 HOH A 62 1362 75 HOH HOH . G 5 HOH A 63 1363 88 HOH HOH . H 5 HOH B 1 1301 25 HOH HOH . H 5 HOH B 2 1302 18 HOH HOH . H 5 HOH B 3 1303 30 HOH HOH . H 5 HOH B 4 1304 39 HOH HOH . H 5 HOH B 5 1305 59 HOH HOH . H 5 HOH B 6 1306 74 HOH HOH . H 5 HOH B 7 1307 61 HOH HOH . H 5 HOH B 8 1308 15 HOH HOH . H 5 HOH B 9 1309 78 HOH HOH . H 5 HOH B 10 1310 49 HOH HOH . H 5 HOH B 11 1311 46 HOH HOH . H 5 HOH B 12 1312 60 HOH HOH . H 5 HOH B 13 1313 22 HOH HOH . H 5 HOH B 14 1314 26 HOH HOH . H 5 HOH B 15 1315 57 HOH HOH . H 5 HOH B 16 1316 28 HOH HOH . H 5 HOH B 17 1317 58 HOH HOH . H 5 HOH B 18 1318 56 HOH HOH . H 5 HOH B 19 1319 47 HOH HOH . H 5 HOH B 20 1320 85 HOH HOH . H 5 HOH B 21 1321 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAS JHL . . . E 4 10.127 -4.376 -10.977 1 26.45 ? CAS JHL 1203 A 1 HETATM 2 C CAT JHL . . . E 4 11.033 -5.51 -11.241 1 26.88 ? CAT JHL 1203 A 1 HETATM 3 C CAU JHL . . . E 4 12.244 -4.941 -11.965 1 28.86 ? CAU JHL 1203 A 1 HETATM 4 O OAX JHL . . . E 4 13.087 -6.073 -12.323 1 35.46 ? OAX JHL 1203 A 1 HETATM 5 C CAY JHL . . . E 4 14.392 -5.703 -12.787 1 39.7 ? CAY JHL 1203 A 1 HETATM 6 C CAV JHL . . . E 4 11.883 -4.165 -13.248 1 28.2 ? CAV JHL 1203 A 1 HETATM 7 C CAW JHL . . . E 4 10.9 -3.041 -12.921 1 27.05 ? CAW JHL 1203 A 1 HETATM 8 C CAQ JHL . . . E 4 9.744 -3.639 -12.255 1 25.59 ? CAQ JHL 1203 A 1 HETATM 9 N NAP JHL . . . E 4 8.669 -2.716 -11.901 1 26.02 ? NAP JHL 1203 A 1 HETATM 10 C CAK JHL . . . E 4 8.745 -1.724 -10.975 1 23.55 ? CAK JHL 1203 A 1 HETATM 11 C CAL JHL . . . E 4 9.769 -1.212 -10.265 1 23.5 ? CAL JHL 1203 A 1 HETATM 12 C CAM JHL . . . E 4 9.537 -0.135 -9.374 1 22.21 ? CAM JHL 1203 A 1 HETATM 13 C CAH JHL . . . E 4 8.257 0.458 -9.239 1 21.69 ? CAH JHL 1203 A 1 HETATM 14 C CAA JHL . . . E 4 8.044 1.503 -8.368 1 21.46 ? CAA JHL 1203 A 1 HETATM 15 C CAE JHL . . . E 4 7.436 2.692 -8.6 1 23.63 ? CAE JHL 1203 A 1 HETATM 16 C CAG JHL . . . E 4 6.817 3.101 -9.899 1 23.66 ? CAG JHL 1203 A 1 HETATM 17 O OAD JHL . . . E 4 7.32 3.385 -7.579 1 21.63 ? OAD JHL 1203 A 1 HETATM 18 N NAC JHL . . . E 4 8.029 2.67 -6.479 1 25.16 ? NAC JHL 1203 A 1 HETATM 19 C CAB JHL . . . E 4 8.435 1.541 -7.058 1 21.4 ? CAB JHL 1203 A 1 HETATM 20 C CAF JHL . . . E 4 9.162 0.523 -6.212 1 21.45 ? CAF JHL 1203 A 1 HETATM 21 C CAI JHL . . . E 4 7.262 -0.131 -10.02 1 21.93 ? CAI JHL 1203 A 1 HETATM 22 C CAJ JHL . . . E 4 7.517 -1.181 -10.863 1 24.33 ? CAJ JHL 1203 A 1 HETATM 23 N NAN JHL . . . E 4 6.713 -1.879 -11.704 1 23.65 ? NAN JHL 1203 A 1 HETATM 24 C CAO JHL . . . E 4 7.4 -2.841 -12.302 1 30.05 ? CAO JHL 1203 A 1 HETATM 25 C CAR JHL . . . E 4 6.845 -3.822 -13.247 1 30.82 ? CAR JHL 1203 A 1 HETATM 26 C CBD JHL . . . E 4 6.034 -3.098 -14.336 1 35.17 ? CBD JHL 1203 A 1 HETATM 27 C CBC JHL . . . E 4 5.247 -4.15 -15.117 1 34 ? CBC JHL 1203 A 1 HETATM 28 C CBB JHL . . . E 4 4.153 -4.633 -14.247 1 34.18 ? CBB JHL 1203 A 1 HETATM 29 C CBA JHL . . . E 4 4.741 -5.281 -13.091 1 32.25 ? CBA JHL 1203 A 1 HETATM 30 O OBM JHL . . . E 4 4.058 -6.103 -12.5 1 32.46 ? OBM JHL 1203 A 1 HETATM 31 N NAZ JHL . . . E 4 5.975 -4.962 -12.591 1 33.04 ? NAZ JHL 1203 A 1 HETATM 32 C CBE JHL . . . E 4 6.385 -5.646 -11.473 1 30.16 ? CBE JHL 1203 A 1 HETATM 33 C CBF JHL . . . E 4 5.811 -5.367 -10.22 1 29.09 ? CBF JHL 1203 A 1 HETATM 34 C CBG JHL . . . E 4 6.237 -6.071 -9.087 1 25.87 ? CBG JHL 1203 A 1 HETATM 35 F FBL JHL . . . E 4 5.654 -5.759 -7.919 1 27.43 ? FBL JHL 1203 A 1 HETATM 36 C CBH JHL . . . E 4 7.213 -7.073 -9.199 1 27.43 ? CBH JHL 1203 A 1 HETATM 37 F FBK JHL . . . E 4 7.661 -7.722 -8.149 1 27.36 ? FBK JHL 1203 A 1 HETATM 38 C CBI JHL . . . E 4 7.773 -7.346 -10.442 1 30.56 ? CBI JHL 1203 A 1 HETATM 39 C CBJ JHL . . . E 4 7.36 -6.636 -11.568 1 31.1 ? CBJ JHL 1203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #