data_7XHE # _model_server_result.job_id 0x3ZwzdIbgfqV0n5MFrDqw _model_server_result.datetime_utc '2024-11-27 02:57:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 7XHE # _exptl.entry_id 7XHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 581.658 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6S)-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(3R)-1-methylsulfonylpyrrolidin-3-yl]benzimidazol-2-yl]-1-(3-fluoranyl-4-methoxy-phenyl)piperidin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.66 _cell.angle_gamma 90 _cell.entry_id 7XHE _cell.length_a 48.58 _cell.length_b 33.77 _cell.length_c 78.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C29 H32 F N5 O5 S' _chem_comp.formula_weight 581.658 _chem_comp.id JHF _chem_comp.mon_nstd_flag . _chem_comp.name (6S)-6-[5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(3R)-1-methylsulfonylpyrrolidin-3-yl]benzimidazol-2-yl]-1-(3-fluoranyl-4-methoxy-phenyl)piperidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAX CAW JHF sing 182 n n CAX CAY JHF sing 183 n n CAW CAR JHF sing 184 n n CBO SBL JHF sing 185 n n CAY CAZ JHF sing 186 n n OBN SBL JHF doub 187 n n CAR NBA JHF sing 188 n n CAR CAO JHF sing 189 n n CAZ NBA JHF sing 190 n n CAZ OBK JHF doub 191 n n CAV NAU JHF sing 192 n n CAV CAQ JHF sing 193 n n SBL NAU JHF sing 194 n n SBL OBM JHF doub 195 n n NBA CBB JHF sing 196 n n NAU CAT JHF sing 197 n n CAQ NAN JHF sing 198 n n CAQ CAS JHF sing 199 n n CAO NAN JHF sing 200 n y CAO NAP JHF doub 201 n y NAN CAK JHF sing 202 n y CBC CBB JHF doub 203 n y CBC CBD JHF sing 204 n y NAP CAL JHF sing 205 n y CBB CBG JHF sing 206 n y CAT CAS JHF sing 207 n n CAK CAL JHF doub 208 n y CAK CAJ JHF sing 209 n y CAL CAM JHF sing 210 n y CBD CBE JHF doub 211 n y CBG CBF JHF doub 212 n y CAJ CAI JHF doub 213 n y CAM CAF JHF doub 214 n y CAG CAE JHF sing 215 n n CBE CBF JHF sing 216 n y CBE OBI JHF sing 217 n n CAI CAF JHF sing 218 n y CBF FBH JHF sing 219 n n CAF CAA JHF sing 220 n n CAE CAA JHF doub 221 n y CAE OAD JHF sing 222 n y CBJ OBI JHF sing 223 n n CAA CAB JHF sing 224 n y OAD NAC JHF sing 225 n y CAB NAC JHF doub 226 n y CAB CAH JHF sing 227 n n CBJ H1 JHF sing 228 n n CBJ H2 JHF sing 229 n n CBJ H3 JHF sing 230 n n CBG H4 JHF sing 231 n n CBD H5 JHF sing 232 n n CBC H6 JHF sing 233 n n CAY H7 JHF sing 234 n n CAY H8 JHF sing 235 n n CAX H9 JHF sing 236 n n CAX H10 JHF sing 237 n n CAW H11 JHF sing 238 n n CAW H12 JHF sing 239 n n CAR H13 JHF sing 240 n n CAM H14 JHF sing 241 n n CAG H15 JHF sing 242 n n CAG H16 JHF sing 243 n n CAG H17 JHF sing 244 n n CAH H18 JHF sing 245 n n CAH H19 JHF sing 246 n n CAH H20 JHF sing 247 n n CAI H21 JHF sing 248 n n CAJ H22 JHF sing 249 n n CAQ H23 JHF sing 250 n n CAV H24 JHF sing 251 n n CAV H25 JHF sing 252 n n CAS H26 JHF sing 253 n n CAS H27 JHF sing 254 n n CAT H28 JHF sing 255 n n CAT H29 JHF sing 256 n n CBO H30 JHF sing 257 n n CBO H31 JHF sing 258 n n CBO H32 JHF sing 259 n n # _atom_sites.entry_id 7XHE _atom_sites.fract_transf_matrix[1][1] 0.020585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001678 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JHF A 1 1201 1 JHF JHF . D 3 EDO A 1 1202 1 EDO EDO . E 2 JHF B 1 1201 2 JHF JHF . F 4 HOH A 1 1301 152 HOH HOH . F 4 HOH A 2 1302 101 HOH HOH . F 4 HOH A 3 1303 98 HOH HOH . F 4 HOH A 4 1304 47 HOH HOH . F 4 HOH A 5 1305 45 HOH HOH . F 4 HOH A 6 1306 56 HOH HOH . F 4 HOH A 7 1307 121 HOH HOH . F 4 HOH A 8 1308 32 HOH HOH . F 4 HOH A 9 1309 51 HOH HOH . F 4 HOH A 10 1310 109 HOH HOH . F 4 HOH A 11 1311 110 HOH HOH . F 4 HOH A 12 1312 62 HOH HOH . F 4 HOH A 13 1313 66 HOH HOH . F 4 HOH A 14 1314 70 HOH HOH . F 4 HOH A 15 1315 31 HOH HOH . F 4 HOH A 16 1316 55 HOH HOH . F 4 HOH A 17 1317 99 HOH HOH . F 4 HOH A 18 1318 150 HOH HOH . F 4 HOH A 19 1319 103 HOH HOH . F 4 HOH A 20 1320 102 HOH HOH . F 4 HOH A 21 1321 13 HOH HOH . F 4 HOH A 22 1322 69 HOH HOH . F 4 HOH A 23 1323 104 HOH HOH . F 4 HOH A 24 1324 100 HOH HOH . F 4 HOH A 25 1325 12 HOH HOH . F 4 HOH A 26 1326 33 HOH HOH . F 4 HOH A 27 1327 28 HOH HOH . F 4 HOH A 28 1328 8 HOH HOH . F 4 HOH A 29 1329 15 HOH HOH . F 4 HOH A 30 1330 54 HOH HOH . F 4 HOH A 31 1331 53 HOH HOH . F 4 HOH A 32 1332 14 HOH HOH . F 4 HOH A 33 1333 46 HOH HOH . F 4 HOH A 34 1334 111 HOH HOH . F 4 HOH A 35 1335 39 HOH HOH . F 4 HOH A 36 1336 42 HOH HOH . F 4 HOH A 37 1337 68 HOH HOH . F 4 HOH A 38 1338 93 HOH HOH . F 4 HOH A 39 1339 63 HOH HOH . F 4 HOH A 40 1340 1 HOH HOH . F 4 HOH A 41 1341 90 HOH HOH . F 4 HOH A 42 1342 59 HOH HOH . F 4 HOH A 43 1343 7 HOH HOH . F 4 HOH A 44 1344 5 HOH HOH . F 4 HOH A 45 1345 9 HOH HOH . F 4 HOH A 46 1346 10 HOH HOH . F 4 HOH A 47 1347 112 HOH HOH . F 4 HOH A 48 1348 2 HOH HOH . F 4 HOH A 49 1349 16 HOH HOH . F 4 HOH A 50 1350 3 HOH HOH . F 4 HOH A 51 1351 19 HOH HOH . F 4 HOH A 52 1352 17 HOH HOH . F 4 HOH A 53 1353 123 HOH HOH . F 4 HOH A 54 1354 27 HOH HOH . F 4 HOH A 55 1355 18 HOH HOH . F 4 HOH A 56 1356 50 HOH HOH . F 4 HOH A 57 1357 120 HOH HOH . F 4 HOH A 58 1358 48 HOH HOH . F 4 HOH A 59 1359 4 HOH HOH . F 4 HOH A 60 1360 106 HOH HOH . F 4 HOH A 61 1361 95 HOH HOH . F 4 HOH A 62 1362 49 HOH HOH . F 4 HOH A 63 1363 115 HOH HOH . F 4 HOH A 64 1364 149 HOH HOH . F 4 HOH A 65 1365 26 HOH HOH . F 4 HOH A 66 1366 29 HOH HOH . F 4 HOH A 67 1367 34 HOH HOH . F 4 HOH A 68 1368 116 HOH HOH . F 4 HOH A 69 1369 61 HOH HOH . F 4 HOH A 70 1370 11 HOH HOH . F 4 HOH A 71 1371 158 HOH HOH . F 4 HOH A 72 1372 92 HOH HOH . F 4 HOH A 73 1373 94 HOH HOH . F 4 HOH A 74 1374 96 HOH HOH . F 4 HOH A 75 1375 20 HOH HOH . F 4 HOH A 76 1376 21 HOH HOH . F 4 HOH A 77 1377 58 HOH HOH . F 4 HOH A 78 1378 108 HOH HOH . F 4 HOH A 79 1379 57 HOH HOH . F 4 HOH A 80 1380 30 HOH HOH . F 4 HOH A 81 1381 114 HOH HOH . F 4 HOH A 82 1382 105 HOH HOH . F 4 HOH A 83 1383 107 HOH HOH . F 4 HOH A 84 1384 113 HOH HOH . F 4 HOH A 85 1385 44 HOH HOH . F 4 HOH A 86 1386 144 HOH HOH . F 4 HOH A 87 1387 71 HOH HOH . F 4 HOH A 88 1388 122 HOH HOH . F 4 HOH A 89 1389 154 HOH HOH . F 4 HOH A 90 1390 119 HOH HOH . F 4 HOH A 91 1391 155 HOH HOH . F 4 HOH A 92 1392 65 HOH HOH . F 4 HOH A 93 1393 88 HOH HOH . F 4 HOH A 94 1394 118 HOH HOH . F 4 HOH A 95 1395 157 HOH HOH . F 4 HOH A 96 1396 97 HOH HOH . F 4 HOH A 97 1397 67 HOH HOH . F 4 HOH A 98 1398 156 HOH HOH . F 4 HOH A 99 1399 64 HOH HOH . F 4 HOH A 100 1400 117 HOH HOH . F 4 HOH A 101 1401 91 HOH HOH . G 4 HOH B 1 1301 80 HOH HOH . G 4 HOH B 2 1302 164 HOH HOH . G 4 HOH B 3 1303 159 HOH HOH . G 4 HOH B 4 1304 128 HOH HOH . G 4 HOH B 5 1305 129 HOH HOH . G 4 HOH B 6 1306 127 HOH HOH . G 4 HOH B 7 1307 139 HOH HOH . G 4 HOH B 8 1308 84 HOH HOH . G 4 HOH B 9 1309 87 HOH HOH . G 4 HOH B 10 1310 163 HOH HOH . G 4 HOH B 11 1311 137 HOH HOH . G 4 HOH B 12 1312 153 HOH HOH . G 4 HOH B 13 1313 136 HOH HOH . G 4 HOH B 14 1314 132 HOH HOH . G 4 HOH B 15 1315 78 HOH HOH . G 4 HOH B 16 1316 133 HOH HOH . G 4 HOH B 17 1317 141 HOH HOH . G 4 HOH B 18 1318 126 HOH HOH . G 4 HOH B 19 1319 43 HOH HOH . G 4 HOH B 20 1320 161 HOH HOH . G 4 HOH B 21 1321 6 HOH HOH . G 4 HOH B 22 1322 23 HOH HOH . G 4 HOH B 23 1323 82 HOH HOH . G 4 HOH B 24 1324 24 HOH HOH . G 4 HOH B 25 1325 162 HOH HOH . G 4 HOH B 26 1326 36 HOH HOH . G 4 HOH B 27 1327 147 HOH HOH . G 4 HOH B 28 1328 35 HOH HOH . G 4 HOH B 29 1329 160 HOH HOH . G 4 HOH B 30 1330 125 HOH HOH . G 4 HOH B 31 1331 83 HOH HOH . G 4 HOH B 32 1332 86 HOH HOH . G 4 HOH B 33 1333 41 HOH HOH . G 4 HOH B 34 1334 89 HOH HOH . G 4 HOH B 35 1335 79 HOH HOH . G 4 HOH B 36 1336 138 HOH HOH . G 4 HOH B 37 1337 52 HOH HOH . G 4 HOH B 38 1338 135 HOH HOH . G 4 HOH B 39 1339 25 HOH HOH . G 4 HOH B 40 1340 37 HOH HOH . G 4 HOH B 41 1341 142 HOH HOH . G 4 HOH B 42 1342 131 HOH HOH . G 4 HOH B 43 1343 38 HOH HOH . G 4 HOH B 44 1344 81 HOH HOH . G 4 HOH B 45 1345 124 HOH HOH . G 4 HOH B 46 1346 145 HOH HOH . G 4 HOH B 47 1347 134 HOH HOH . G 4 HOH B 48 1348 77 HOH HOH . G 4 HOH B 49 1349 76 HOH HOH . G 4 HOH B 50 1350 85 HOH HOH . G 4 HOH B 51 1351 72 HOH HOH . G 4 HOH B 52 1352 143 HOH HOH . G 4 HOH B 53 1353 22 HOH HOH . G 4 HOH B 54 1354 73 HOH HOH . G 4 HOH B 55 1355 140 HOH HOH . G 4 HOH B 56 1356 151 HOH HOH . G 4 HOH B 57 1357 148 HOH HOH . G 4 HOH B 58 1358 130 HOH HOH . G 4 HOH B 59 1359 74 HOH HOH . G 4 HOH B 60 1360 75 HOH HOH . G 4 HOH B 61 1361 60 HOH HOH . G 4 HOH B 62 1362 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBJ JHF . . . C 2 8.26 -8.517 -8.328 1 14.25 ? CBJ JHF 1201 A 1 HETATM 2 O OBI JHF . . . C 2 7.23 -7.524 -8.18 1 15.04 ? OBI JHF 1201 A 1 HETATM 3 C CBE JHF . . . C 2 6.873 -6.879 -9.35 1 16.14 ? CBE JHF 1201 A 1 HETATM 4 C CBF JHF . . . C 2 5.924 -5.879 -9.182 1 16.65 ? CBF JHF 1201 A 1 HETATM 5 F FBH JHF . . . C 2 5.531 -5.54 -7.933 1 15.54 ? FBH JHF 1201 A 1 HETATM 6 C CBG JHF . . . C 2 5.504 -5.163 -10.312 1 17.76 ? CBG JHF 1201 A 1 HETATM 7 C CBD JHF . . . C 2 7.312 -7.231 -10.66 1 18.67 ? CBD JHF 1201 A 1 HETATM 8 C CBC JHF . . . C 2 6.878 -6.496 -11.768 1 19.02 ? CBC JHF 1201 A 1 HETATM 9 C CBB JHF . . . C 2 5.961 -5.467 -11.605 1 18.85 ? CBB JHF 1201 A 1 HETATM 10 N NBA JHF . . . C 2 5.555 -4.709 -12.691 1 20.75 ? NBA JHF 1201 A 1 HETATM 11 C CAZ JHF . . . C 2 4.347 -4.995 -13.227 1 21.54 ? CAZ JHF 1201 A 1 HETATM 12 O OBK JHF . . . C 2 3.67 -5.852 -12.669 1 21.13 ? OBK JHF 1201 A 1 HETATM 13 C CAY JHF . . . C 2 3.846 -4.244 -14.341 1 22.08 ? CAY JHF 1201 A 1 HETATM 14 C CAX JHF . . . C 2 4.999 -3.927 -15.234 1 21.99 ? CAX JHF 1201 A 1 HETATM 15 C CAW JHF . . . C 2 6.003 -2.901 -14.594 1 22.1 ? CAW JHF 1201 A 1 HETATM 16 C CAR JHF . . . C 2 6.573 -3.705 -13.333 1 19.31 ? CAR JHF 1201 A 1 HETATM 17 C CAO JHF . . . C 2 7.176 -2.788 -12.35 1 18.12 ? CAO JHF 1201 A 1 HETATM 18 N NAP JHF . . . C 2 6.525 -1.828 -11.688 1 15.71 ? NAP JHF 1201 A 1 HETATM 19 C CAL JHF . . . C 2 7.416 -1.226 -10.845 1 14.09 ? CAL JHF 1201 A 1 HETATM 20 C CAM JHF . . . C 2 7.288 -0.174 -9.967 1 11.95 ? CAM JHF 1201 A 1 HETATM 21 C CAF JHF . . . C 2 8.329 0.311 -9.179 1 12.35 ? CAF JHF 1201 A 1 HETATM 22 C CAA JHF . . . C 2 8.154 1.365 -8.286 1 12.09 ? CAA JHF 1201 A 1 HETATM 23 C CAE JHF . . . C 2 7.532 2.548 -8.558 1 11.31 ? CAE JHF 1201 A 1 HETATM 24 C CAG JHF . . . C 2 6.907 3.004 -9.844 1 11.71 ? CAG JHF 1201 A 1 HETATM 25 O OAD JHF . . . C 2 7.501 3.32 -7.496 1 10.5 ? OAD JHF 1201 A 1 HETATM 26 N NAC JHF . . . C 2 8.212 2.54 -6.408 1 12.87 ? NAC JHF 1201 A 1 HETATM 27 C CAB JHF . . . C 2 8.533 1.414 -6.97 1 12.2 ? CAB JHF 1201 A 1 HETATM 28 C CAH JHF . . . C 2 9.27 0.414 -6.158 1 12.26 ? CAH JHF 1201 A 1 HETATM 29 C CAI JHF . . . C 2 9.581 -0.325 -9.329 1 12.3 ? CAI JHF 1201 A 1 HETATM 30 C CAJ JHF . . . C 2 9.68 -1.365 -10.273 1 14 ? CAJ JHF 1201 A 1 HETATM 31 C CAK JHF . . . C 2 8.627 -1.815 -10.986 1 14.65 ? CAK JHF 1201 A 1 HETATM 32 N NAN JHF . . . C 2 8.487 -2.793 -11.962 1 16.42 ? NAN JHF 1201 A 1 HETATM 33 C CAQ JHF . . . C 2 9.62 -3.718 -12.379 1 20 ? CAQ JHF 1201 A 1 HETATM 34 C CAV JHF . . . C 2 10.707 -2.939 -12.95 1 20.24 ? CAV JHF 1201 A 1 HETATM 35 C CAS JHF . . . C 2 10.143 -4.589 -11.231 1 17.75 ? CAS JHF 1201 A 1 HETATM 36 C CAT JHF . . . C 2 11.658 -4.62 -11.425 1 20.71 ? CAT JHF 1201 A 1 HETATM 37 N NAU JHF . . . C 2 11.87 -3.736 -12.572 1 23.37 ? NAU JHF 1201 A 1 HETATM 38 S SBL JHF . . . C 2 13.405 -2.956 -12.915 1 24.04 ? SBL JHF 1201 A 1 HETATM 39 O OBM JHF . . . C 2 14.379 -3.245 -11.816 1 28.53 ? OBM JHF 1201 A 1 HETATM 40 O OBN JHF . . . C 2 13.213 -1.516 -13.359 1 29.77 ? OBN JHF 1201 A 1 HETATM 41 C CBO JHF . . . C 2 13.877 -3.927 -14.362 1 23.76 ? CBO JHF 1201 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #