data_7XI0 # _model_server_result.job_id cFowJEA8LoJ2C2lDflQxtg _model_server_result.datetime_utc '2025-01-25 11:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7xi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1202}' # _entry.id 7XI0 # _exptl.entry_id 7XI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.65 _cell.angle_gamma 90 _cell.entry_id 7XI0 _cell.length_a 48.54 _cell.length_b 33.84 _cell.length_c 78.699 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7XI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 207 n n C1 C2 GOL sing 208 n n C1 H11 GOL sing 209 n n C1 H12 GOL sing 210 n n O1 HO1 GOL sing 211 n n C2 O2 GOL sing 212 n n C2 C3 GOL sing 213 n n C2 H2 GOL sing 214 n n O2 HO2 GOL sing 215 n n C3 O3 GOL sing 216 n n C3 H31 GOL sing 217 n n C3 H32 GOL sing 218 n n O3 HO3 GOL sing 219 n n # _atom_sites.entry_id 7XI0 _atom_sites.fract_transf_matrix[1][1] 0.020602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001676 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EL0 A 1 1201 1 EL0 JHI . D 3 GOL A 1 1202 1 GOL GOL . E 2 EL0 B 1 1201 2 EL0 JHI . F 4 HOH A 1 1301 134 HOH HOH . F 4 HOH A 2 1302 115 HOH HOH . F 4 HOH A 3 1303 93 HOH HOH . F 4 HOH A 4 1304 97 HOH HOH . F 4 HOH A 5 1305 44 HOH HOH . F 4 HOH A 6 1306 14 HOH HOH . F 4 HOH A 7 1307 25 HOH HOH . F 4 HOH A 8 1308 18 HOH HOH . F 4 HOH A 9 1309 49 HOH HOH . F 4 HOH A 10 1310 23 HOH HOH . F 4 HOH A 11 1311 101 HOH HOH . F 4 HOH A 12 1312 87 HOH HOH . F 4 HOH A 13 1313 94 HOH HOH . F 4 HOH A 14 1314 28 HOH HOH . F 4 HOH A 15 1315 11 HOH HOH . F 4 HOH A 16 1316 75 HOH HOH . F 4 HOH A 17 1317 68 HOH HOH . F 4 HOH A 18 1318 63 HOH HOH . F 4 HOH A 19 1319 15 HOH HOH . F 4 HOH A 20 1320 135 HOH HOH . F 4 HOH A 21 1321 16 HOH HOH . F 4 HOH A 22 1322 80 HOH HOH . F 4 HOH A 23 1323 133 HOH HOH . F 4 HOH A 24 1324 37 HOH HOH . F 4 HOH A 25 1325 117 HOH HOH . F 4 HOH A 26 1326 89 HOH HOH . F 4 HOH A 27 1327 73 HOH HOH . F 4 HOH A 28 1328 129 HOH HOH . F 4 HOH A 29 1329 77 HOH HOH . F 4 HOH A 30 1330 31 HOH HOH . F 4 HOH A 31 1331 8 HOH HOH . F 4 HOH A 32 1332 50 HOH HOH . F 4 HOH A 33 1333 41 HOH HOH . F 4 HOH A 34 1334 69 HOH HOH . F 4 HOH A 35 1335 4 HOH HOH . F 4 HOH A 36 1336 34 HOH HOH . F 4 HOH A 37 1337 124 HOH HOH . F 4 HOH A 38 1338 1 HOH HOH . F 4 HOH A 39 1339 3 HOH HOH . F 4 HOH A 40 1340 19 HOH HOH . F 4 HOH A 41 1341 62 HOH HOH . F 4 HOH A 42 1342 84 HOH HOH . F 4 HOH A 43 1343 10 HOH HOH . F 4 HOH A 44 1344 42 HOH HOH . F 4 HOH A 45 1345 9 HOH HOH . F 4 HOH A 46 1346 118 HOH HOH . F 4 HOH A 47 1347 128 HOH HOH . F 4 HOH A 48 1348 7 HOH HOH . F 4 HOH A 49 1349 6 HOH HOH . F 4 HOH A 50 1350 70 HOH HOH . F 4 HOH A 51 1351 81 HOH HOH . F 4 HOH A 52 1352 2 HOH HOH . F 4 HOH A 53 1353 33 HOH HOH . F 4 HOH A 54 1354 45 HOH HOH . F 4 HOH A 55 1355 66 HOH HOH . F 4 HOH A 56 1356 21 HOH HOH . F 4 HOH A 57 1357 30 HOH HOH . F 4 HOH A 58 1358 13 HOH HOH . F 4 HOH A 59 1359 98 HOH HOH . F 4 HOH A 60 1360 17 HOH HOH . F 4 HOH A 61 1361 54 HOH HOH . F 4 HOH A 62 1362 48 HOH HOH . F 4 HOH A 63 1363 24 HOH HOH . F 4 HOH A 64 1364 85 HOH HOH . F 4 HOH A 65 1365 38 HOH HOH . F 4 HOH A 66 1366 91 HOH HOH . F 4 HOH A 67 1367 107 HOH HOH . F 4 HOH A 68 1368 56 HOH HOH . F 4 HOH A 69 1369 65 HOH HOH . F 4 HOH A 70 1370 59 HOH HOH . F 4 HOH A 71 1371 20 HOH HOH . F 4 HOH A 72 1372 39 HOH HOH . F 4 HOH A 73 1373 12 HOH HOH . F 4 HOH A 74 1374 5 HOH HOH . F 4 HOH A 75 1375 79 HOH HOH . F 4 HOH A 76 1376 51 HOH HOH . F 4 HOH A 77 1377 131 HOH HOH . F 4 HOH A 78 1378 55 HOH HOH . F 4 HOH A 79 1379 86 HOH HOH . F 4 HOH A 80 1380 109 HOH HOH . F 4 HOH A 81 1381 108 HOH HOH . F 4 HOH A 82 1382 83 HOH HOH . F 4 HOH A 83 1383 106 HOH HOH . F 4 HOH A 84 1384 72 HOH HOH . F 4 HOH A 85 1385 29 HOH HOH . F 4 HOH A 86 1386 100 HOH HOH . F 4 HOH A 87 1387 74 HOH HOH . F 4 HOH A 88 1388 111 HOH HOH . F 4 HOH A 89 1389 132 HOH HOH . F 4 HOH A 90 1390 61 HOH HOH . F 4 HOH A 91 1391 58 HOH HOH . F 4 HOH A 92 1392 88 HOH HOH . G 4 HOH B 1 1301 71 HOH HOH . G 4 HOH B 2 1302 123 HOH HOH . G 4 HOH B 3 1303 116 HOH HOH . G 4 HOH B 4 1304 126 HOH HOH . G 4 HOH B 5 1305 99 HOH HOH . G 4 HOH B 6 1306 104 HOH HOH . G 4 HOH B 7 1307 92 HOH HOH . G 4 HOH B 8 1308 35 HOH HOH . G 4 HOH B 9 1309 122 HOH HOH . G 4 HOH B 10 1310 90 HOH HOH . G 4 HOH B 11 1311 130 HOH HOH . G 4 HOH B 12 1312 22 HOH HOH . G 4 HOH B 13 1313 46 HOH HOH . G 4 HOH B 14 1314 96 HOH HOH . G 4 HOH B 15 1315 64 HOH HOH . G 4 HOH B 16 1316 52 HOH HOH . G 4 HOH B 17 1317 36 HOH HOH . G 4 HOH B 18 1318 26 HOH HOH . G 4 HOH B 19 1319 32 HOH HOH . G 4 HOH B 20 1320 40 HOH HOH . G 4 HOH B 21 1321 78 HOH HOH . G 4 HOH B 22 1322 43 HOH HOH . G 4 HOH B 23 1323 105 HOH HOH . G 4 HOH B 24 1324 114 HOH HOH . G 4 HOH B 25 1325 67 HOH HOH . G 4 HOH B 26 1326 60 HOH HOH . G 4 HOH B 27 1327 113 HOH HOH . G 4 HOH B 28 1328 57 HOH HOH . G 4 HOH B 29 1329 103 HOH HOH . G 4 HOH B 30 1330 53 HOH HOH . G 4 HOH B 31 1331 76 HOH HOH . G 4 HOH B 32 1332 120 HOH HOH . G 4 HOH B 33 1333 112 HOH HOH . G 4 HOH B 34 1334 47 HOH HOH . G 4 HOH B 35 1335 125 HOH HOH . G 4 HOH B 36 1336 27 HOH HOH . G 4 HOH B 37 1337 102 HOH HOH . G 4 HOH B 38 1338 127 HOH HOH . G 4 HOH B 39 1339 121 HOH HOH . G 4 HOH B 40 1340 82 HOH HOH . G 4 HOH B 41 1341 110 HOH HOH . G 4 HOH B 42 1342 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 24.297 9.498 6.877 1 34.7 ? C1 GOL 1202 A 1 HETATM 2 O O1 GOL . . . D 3 25.259 10.279 7.606 1 37.06 ? O1 GOL 1202 A 1 HETATM 3 C C2 GOL . . . D 3 23.315 10.426 6.206 1 32.94 ? C2 GOL 1202 A 1 HETATM 4 O O2 GOL . . . D 3 23.389 10.274 4.781 1 29.82 ? O2 GOL 1202 A 1 HETATM 5 C C3 GOL . . . D 3 21.899 10.177 6.71 1 31.16 ? C3 GOL 1202 A 1 HETATM 6 O O3 GOL . . . D 3 21.499 8.899 6.248 1 28.62 ? O3 GOL 1202 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #