data_7XJD
#
_model_server_result.job_id            UJD2QUcYYo5Bdbe3tt4QYw 
_model_server_result.datetime_utc      '2024-11-13 02:12:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7xjd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":328}' 
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_entry.id    7XJD 
#
_exptl.entry_id    7XJD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              653.157 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DI-PHYTANYL-GLYCEROL 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7XJD 
_cell.length_a            60.57 
_cell.length_b            60.57 
_cell.length_c            110.89 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7XJD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_635 -y+1,x-y-2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 121.14 -104.910317 0 
3 'crystal symmetry operation' 3_865 -x+y+3,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 151.425 52.455159 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             212 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.351 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C43 H88 O3' 
_chem_comp.formula_weight    653.157 
_chem_comp.id                L2P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DI-PHYTANYL-GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,2-DI-1-(3,7,11,15-TETRAMETHYL-HEXADECANE)-SN-GLYCEROL 
#
_atom_sites.entry_id                     7XJD 
_atom_sites.fract_transf_matrix[1][1]    0.01651 
_atom_sites.fract_transf_matrix[1][2]    0.009532 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019064 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009018 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 L2P A 1 302 302 L2P L2P . 
D 3 L2P A 1 303 303 L2P L2P . 
E 3 L2P A 1 304 304 L2P L2P . 
F 3 L2P A 1 305 305 L2P L2P . 
G 3 L2P A 1 306 306 L2P L2P . 
H 4 SQU A 1 312 312 SQU SQU . 
I 3 L2P A 1 313 313 L2P L2P . 
J 3 L2P A 1 315 315 L2P L2P . 
K 3 L2P A 1 320 320 L2P L2P . 
L 3 L2P A 1 322 322 L2P L2P . 
M 3 L2P A 1 323 323 L2P L2P . 
N 3 L2P A 1 324 324 L2P L2P . 
O 3 L2P A 1 327 327 L2P L2P . 
P 3 L2P A 1 328 328 L2P L2P . 
Q 3 L2P A 1 333 333 L2P L2P . 
R 4 SQU A 1 341 341 SQU SQU . 
S 4 SQU A 1 342 342 SQU SQU . 
T 4 SQU A 1 343 343 SQU SQU . 
U 5 HOH A 1 401 401 HOH HOH . 
U 5 HOH A 2 402 402 HOH HOH . 
U 5 HOH A 3 403 403 HOH HOH . 
U 5 HOH A 4 404 404 HOH HOH . 
U 5 HOH A 5 405 405 HOH HOH . 
U 5 HOH A 6 406 406 HOH HOH . 
U 5 HOH A 7 407 407 HOH HOH . 
U 5 HOH A 8 411 411 HOH HOH . 
U 5 HOH A 9 412 412 HOH HOH . 
U 5 HOH A 10 415 415 HOH HOH . 
U 5 HOH A 11 416 416 HOH HOH . 
U 5 HOH A 12 419 419 HOH HOH . 
U 5 HOH A 13 420 420 HOH HOH . 
U 5 HOH A 14 450 450 HOH HOH . 
U 5 HOH A 15 451 451 HOH HOH . 
U 5 HOH A 16 453 453 HOH HOH . 
U 5 HOH A 17 454 454 HOH HOH . 
U 5 HOH A 18 455 455 HOH HOH . 
U 5 HOH A 19 456 456 HOH HOH . 
U 5 HOH A 20 457 457 HOH HOH . 
U 5 HOH A 21 458 458 HOH HOH . 
U 5 HOH A 22 459 459 HOH HOH . 
U 5 HOH A 23 460 460 HOH HOH . 
U 5 HOH A 24 501 501 HOH HOH . 
U 5 HOH A 25 502 502 HOH HOH . 
U 5 HOH A 26 511 511 HOH HOH . 
U 5 HOH A 27 512 512 HOH HOH . 
U 5 HOH A 28 513 513 HOH HOH . 
U 5 HOH A 29 514 514 HOH HOH . 
U 5 HOH A 30 530 530 HOH HOH . 
U 5 HOH A 31 531 531 HOH HOH . 
U 5 HOH A 32 532 532 HOH HOH . 
U 5 HOH A 33 533 533 HOH HOH . 
U 5 HOH A 34 534 534 HOH HOH . 
U 5 HOH A 35 535 535 HOH HOH . 
U 5 HOH A 36 536 536 HOH HOH . 
U 5 HOH A 37 537 537 HOH HOH . 
U 5 HOH A 38 538 538 HOH HOH . 
U 5 HOH A 39 539 539 HOH HOH . 
U 5 HOH A 40 540 540 HOH HOH . 
U 5 HOH A 41 541 541 HOH HOH . 
U 5 HOH A 42 542 542 HOH HOH . 
U 5 HOH A 43 543 543 HOH HOH . 
U 5 HOH A 44 544 544 HOH HOH . 
U 5 HOH A 45 545 545 HOH HOH . 
U 5 HOH A 46 546 546 HOH HOH . 
U 5 HOH A 47 547 547 HOH HOH . 
U 5 HOH A 48 548 548 HOH HOH . 
U 5 HOH A 49 549 549 HOH HOH . 
U 5 HOH A 50 550 550 HOH HOH . 
U 5 HOH A 51 551 551 HOH HOH . 
U 5 HOH A 52 552 552 HOH HOH . 
U 5 HOH A 53 553 553 HOH HOH . 
U 5 HOH A 54 554 554 HOH HOH . 
U 5 HOH A 55 555 555 HOH HOH . 
U 5 HOH A 56 556 556 HOH HOH . 
U 5 HOH A 57 557 557 HOH HOH . 
U 5 HOH A 58 558 558 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 L2P . . . P 3 76.076 5.064 -21.608 1 52.52 ? C20 L2P 328 A 1 
HETATM 2 C C21 L2P . . . P 3 76.281 4.144 -22.821 1 53.11 ? C21 L2P 328 A 1 
HETATM 3 C C22 L2P . . . P 3 77.399 4.636 -23.735 1 53.57 ? C22 L2P 328 A 1 
HETATM 4 C C23 L2P . . . P 3 76.887 5.492 -24.894 1 53.92 ? C23 L2P 328 A 1 
HETATM 5 C C25 L2P . . . P 3 77.776 5.484 -26.134 1 54.32 ? C25 L2P 328 A 1 
HETATM 6 C C26 L2P . . . P 3 77.694 6.741 -27.019 1 54.65 ? C26 L2P 328 A 1 
HETATM 7 C C27 L2P . . . P 3 79.099 7.17 -27.482 1 54.77 ? C27 L2P 328 A 1 
HETATM 8 C C28 L2P . . . P 3 79.112 8.037 -28.737 1 55.37 ? C28 L2P 328 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           8 
#